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Plant Physiology 138:1195-1204 (2005)
© 2005 American Society of Plant Biologists

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Update on MapMan

Extension of the Visualization Tool MapMan to Allow Statistical Analysis of Arrays, Display of Coresponding Genes, and Comparison with Known Responses1

Björn Usadel2,*, Axel Nagel2, Oliver Thimm3, Henning Redestig, Oliver E. Blaesing, Natalia Palacios-Rojas4, Joachim Selbig, Jan Hannemann, Maria Conceição Piques, Dirk Steinhauser, Wolf-Rüdiger Scheible, Yves Gibon, Rosa Morcuende5, Daniel Weicht, Svenja Meyer and Mark Stitt

Max Planck Institute of Molecular Plant Physiology, 14476 Golm, Germany (B.U., O.T., H.R., O.E.B., N.P.-R., J.S., J.H., M.C.P., D.S., W.-R.S., Y.G., R.M., D.W., M.S.); and RZPD German Resource Centre for Genome Research, D–14059 Berlin, Germany (A.N., S.M.)

MapMan is a user-driven tool that displays large genomics datasets onto diagrams of metabolic pathways or other processes. Here, we present new developments, including improvements of the gene assignments and the user interface, a strategy to visualize multilayered datasets, the incorporation of statistics packages, and extensions of the software to incorporate more biological information including visualization of coresponding genes and horizontal searches for similar global responses across large numbers of arrays.

1 This work was supported by Bildungsministerium für Bildung und Forschung (BMBF). The original ImageAnnotator was developed within the BMBF-funded project Genomanalyse im biologischen System Pflanze (GABI)-Primary Database (project no. 0312272), and the TranscriptScavenger and MetaboliteScavenger as well as the experimental studies reported in this article were supported by the BMBF-funded project GABI Verbund Arabidopsis III Gauntlets, Carbon and Nutrient Signaling: Test Systems, and Metabolite and Transcript Profiles (project no. 0312277A). The developments reported in this article were largely supported by the BMBF-funded project GABI-MapMan (project nos. 313112 and 313110). This work was also supported by the European Community (contract no. QLK1–CT–2001–01080 to N.P.-R.).

2 These authors contributed equally to the paper.

3 Present address: Centre for Novel Agricultural Products, Department of Biology (Area 7), University of York, P.O. Box 73, York YO10 5YW, UK.

4 Present address: Tropical Ecosystems CIMMYT Apdo, Postal 6–641, Col. Juárez. C.P. 06600, México, Mexico.

5 Present address: Instituto de Recursos Naturales y Agrobiología de Salamanca, Consejo Superior de Investigaciones Científicas, 37008 Salamanca, Spain.

www.plantphysiol.org/cgi/doi/10.1104/pp.105.060459.

* Corresponding author; e-mail usadel{at}mpimp-golm.mpg.de; fax 49–331–567–8101.

Received January 30, 2005; returned for revision April 17, 2005; accepted May 4, 2005.




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