Plant Physiol. (1998) 116: 309-317
Nucleotide Triphosphates Are Required for the Transport of
Glycolate Oxidase into Peroxisomes1
Donna G. Brickner and
Laura J. Olsen*
Department of Biology, University of Michigan, Ann Arbor, Michigan
48109-1048
 |
ABSTRACT |
All peroxisomal proteins are nuclear
encoded, synthesized on free cytosolic ribosomes, and
posttranslationally targeted to the organelle. We have used an in vitro
assay to reconstitute protein import into pumpkin (Cucurbita
pepo) glyoxysomes, a class of peroxisome found in the
cotyledons of oilseed plants, to study the mechanisms involved in
protein transport across peroxisome membranes. Results indicate that
ATP hydrolysis is required for protein import into peroxisomes;
nonhydrolyzable analogs of ATP could not substitute for this
requirement. Nucleotide competition studies suggest that there may be a
nucleotide binding site on a component of the translocation machinery.
Peroxisomal protein import also was supported by GTP hydrolysis.
Nonhydrolyzable analogs of GTP did not substitute in this process.
Experiments to determine the cation specificity of the nucleotide
requirement show that the Mg2+ salt was preferred over
other divalent and monovalent cations. The role of a putative
protonmotive force across the peroxisomal membrane was also examined.
Although low concentrations of ionophores had no effect on protein
import, relatively high concentrations of all ionophores tested
consistently reduced the level of protein import by approximately 50%.
This result suggests that a protonmotive force is not absolutely
required for peroxisomal protein import.
 |
INTRODUCTION |
Peroxisomes are ubiquitous organelles involved in a variety of
important cellular processes, including the degradation of hydrogen
peroxide and the
-oxidation of fatty acids (for review, see Olsen
and Harada, 1995
). The single peroxisomal membrane surrounds a dense
matrix, sometimes containing paracrystalline inclusions (Frederick et
al., 1975
). New organelles are thought to arise by the fission of
preexisting peroxisomes, with the subsequent incorporation of
additional membrane lipids and peroxisomal proteins. There are several
classes of peroxisomes found in higher plants (Kindl, 1992
; Gietl,
1996
). Glyoxysomes are abundant in the cotyledons of most plants and
are involved in lipid mobilization to provide nutrients during
germination and seedling growth (Trelease, 1984
). In leaves,
peroxisomes contain enzymes such as GLO that are necessary for
photorespiration (Ogren, 1984
).
All peroxisomal proteins must be nuclear encoded because peroxisomes do
not contain DNA. Peroxisomal proteins are synthesized on free,
cytosolic ribosomes and imported posttranslationally into the
organelle. The majority of matrix proteins, including GLO, are targeted
to peroxisomes via a carboxyl-terminal tripeptide comprising the amino
acids Ser-Lys-Leu or conserved variants (Gould et al., 1987
; McNew and
Goodman, 1996
). Other peroxisomal proteins, such as malate
dehydrogenase and thiolase, use an amino-terminal targeting signal
(Gietl, 1990
; Swinkels et al., 1991
; Preisig-Müller and Kindl,
1993
). Considerable genetic and biochemical evidence indicates the
involvement of a proteinaceous receptor in peroxisomal protein import
(Wolins and Donaldson, 1994
; Rachubinski and Subramani, 1995
; Dodt and
Gould, 1996
; McNew and Goodman, 1996
; Brickner et al., 1997
). However,
a detailed description of the targeting mechanism and an understanding
of receptor localization remain elusive. Protein import into yeast
peroxisomes may also use other proteins (Dodt and Gould, 1996
),
including a cytosolic ATPase (Yahraus et al., 1996
), a membrane-bound
docking factor (Elgersma et al., 1996
; Erdmann and Blobel, 1996
; Gould
et al., 1996
), an N-ethylmaleimide-sensitive factor
(Wendland and Subramani, 1993
), and a molecular chaperone such as hsp70
(Walton et al., 1994
).
Protein trafficking requires the investment of energy. The hydrolysis
of ATP and/or GTP is required for protein transport into mitochondria
(Pfanner et al., 1990
), chloroplasts (Keegstra et al., 1989
; Theg et
al., 1989
; Kessler et al., 1994
), nuclei (Powers and Forbes, 1994
), and
the ER (Walter and Johnson, 1994
). ATP hydrolysis is known to be
necessary for peroxisomal protein import (Imanaka et al., 1987
;
Wendland and Subramani, 1993
; Horng et al., 1995
; Brickner et al.,
1997
). A careful analysis of the energy requirements for protein
binding to chloroplasts revealed that other NTPs can support this
process, although less efficiently than ATP (Olsen et al., 1989
).
Exactly where and how the energy is being used during translocation is
currently unknown. It is likely that NTP hydrolysis induces
conformational changes in the translocation machinery or in the
targeted protein (perhaps by interaction with an energy-dependent
molecular chaperone), thereby facilitating the protein's entry into
the organelle (Pfanner et al., 1990
).
A PMF is required, in addition to ATP, for the export of proteins from
bacteria (Yamane et al., 1987
; Wong and Buckley, 1989
); a pH gradient
is needed to transport some proteins across thylakoid membranes (Cline
et al., 1992
; Theg and Scott, 1993
); and the electrical component of
the PMF facilitates the import of some proteins into mitochondria
(Pfanner and Neupert, 1986
). Addition of inhibitors or ionophores that
collapse the PMF abolishes protein transport across each of these
membranes. A PMF may exist across the peroxisomal membrane. Some
researchers have found that ionophores inhibit protein import into
peroxisomes (Bellion and Goodman, 1987
), whereas others observed no
effect on peroxisomal protein import (Imanaka et al., 1987
; Wendland
and Subramani, 1993
). An ATPase, analogous to the V-class
H+-ATPase found on vacuolar membranes, may be
present on the peroxisomal membrane (Douma et al., 1987
; del Valle et
al., 1988
; Wolvetang et al., 1990
; Whitney and Bellion, 1991
). ATP
hydrolysis on the cytosolic face would make the peroxisomal matrix
acidic (Nicolay et al., 1987
), thus establishing a PMF that could be
used to drive protein translocation. Alternatively, nonspecific pores
may allow small ions and metabolites to diffuse freely across the
membrane, thereby dissipating an electrochemical or pH gradient (for
review, see van den Bosch et al., 1992
).
We have extensively characterized the energy requirements for protein
import into glyoxysomes using an optimized in vitro assay to
reconstitute the transport event. First, we examined the ability of
various NTPs to support the import of GLO into isolated pumpkin
(Cucurbita pepo) glyoxysomes. The competence of
nonhydrolyzable analogs of ATP and GTP to substitute for the NTP
requirement was also analyzed. Next, we briefly investigated the cation
specificity of the nucleotide requirement for protein import. Finally,
in an effort to characterize the role that a putative PMF might play,
we explored the effect of ionophores on GLO import. Ionophores were
chosen that collapsed the pH gradient, the electrical gradient, or both
components of the PMF. A thorough study of the energetics of protein
import into peroxisomes is necessary to facilitate the understanding of
the molecular mechanisms involved in the transport process.
 |
MATERIALS AND METHODS |
All NTPs, NTP analogs, ionophores, and general chemicals were
purchased from Sigma. Sephadex G-25-80 (fine) was purchased from
Pharmacia. Pumpkin (Cucurbita pepo var Half Moon) seeds were purchased from Petoseed Co., Inc. (Saticoy, CA). Redi-vue
[35S]Met (specific activity, 43.5 TBq/mmol) was
purchased from Amersham.
Preparation of Radiolabeled GLO
The plasmid pGLOZf, containing a cDNA insert for the entire coding
region of the peroxisomal enzyme GLO in the pGEM7Zf(+) vector
(Promega), was linearized with HindIII and transcribed with
SP6 RNA polymerase as described by Brickner et al. (1997)
. Radiolabeled
GLO was synthesized in a cell-free, wheat germ lysate system in the
presence of [35S]Met. To test the NTP
requirements for protein import, free nucleotides were removed from the
translation products by size-exclusion chromatography using Sephadex
G-25-80 (fine) as described by Olsen et al. (1989)
. The efficiency of
the translation reaction was assessed by TCA precipitation of the
proteins onto glass fiber filters, followed by ethanol washes and
quantitation in a liquid scintillation counter (model LS 6800, Beckman). Standard import reactions contained radiolabeled GLO
equivalent to 0.5 × 106 to 1.0 × 106 TCA-precipitable counts (usually 3-15 µL).
Isolation of Pumpkin Glyoxysomes
Pumpkin seeds were germinated in damp vermiculite for 5 to 6 d at 28 to 30°C in complete darkness. For each experiment
approximately 40 g of cotyledons was harvested manually in dim
light. Glyoxysomes were isolated as described by Brickner et al.
(1997)
. The organelle isolation buffer included 10 mm azide
for all experiments except the cation specificity and the ionophore
experiments (see below).
In Vitro Import Assays
Standard import reactions contained glyoxysomes (80-500
µg of protein), radiolabeled GLO, 5 mm
ATP (Mg2+ salt), and import
buffer (25 mm Mes-KOH, pH 6.0, 0.5 m Suc, 10 mm KCl, 1 mm MgCl2,
sometimes also with 10 mm NaN3; see
below) in a final volume of 200 µL. All import reactions were
initiated by the addition of translation products and incubated at
26°C for 30 min. After import, samples were treated with 10 µg/mL
proteinase K for 30 min on ice to digest translation products not
protected by the glyoxysomal membrane. Protease treatment was stopped
by the addition of the inhibitor PMSF (1 mm final
concentration). Intact glyoxysomes were reisolated on a 0.7 m Suc cushion and centrifuged at 8500g for 15 min in a refrigerated microcentrifuge. The pellets were resuspended in
SDS-PAGE sample buffer, heated at 80 to 90°C for 2 to 5 min, and
stored at
20°C until further analysis. Radioactive proteins were
analyzed by SDS-PAGE and visualized by fluorography.
The Mg2+ salt of ATP was used in most standard
import reactions, except that Na2ATP was used for
the cation specificity experiments (see Fig. 2). Other import reactions
were supplemented with additional cations as indicated in the legend to
Figure 2. Import reactions containing other NTPs and/or NTP analogs
were supplemented with equimolar MgCl2 in
addition to the 1 mm MgCl2 present in
the import buffer. The presence of Mg2+ by itself had no
effect on import (data not shown).

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| Figure 2.
Import of GLO into isolated glyoxysomes requires
Mg2+. Standard import reactions were performed as described
in Figure 1 and ``Materials and Methods'' except that 5 mm Na2ATP was present in each reaction instead of MgATP. All other import reactions were supplemented with additional cations (supplied by MgCl2, MnCl2,
CaCl2, or KCl) at 5 mm final concentration. The
level of import observed with 5 mm MgCl2 (and 5 mm Na2ATP) added to the import reaction was set
at 100% for comparison with import levels in the presence of the other
cations. The values presented are the average ± se of two
experiments.
|
|
Glyoxysomes were preincubated with ionophores and 5 mm ATP
for 20 min at room temperature before radiolabeled GLO was added to
start the import reaction. The endogenous NTPs were not removed from
the radiolabeled GLO used in the ionophore experiments. Modified import
buffer (containing only 25 mm Mes-KOH, pH 6.0, and 0.5 m Suc; i.e. lacking the 10 mm KCl, 1 mm MgCl2, and azide) was used in the
cation specificity experiments.
Azide (10 mm NaN3) was included in
the organelle isolation buffer and import buffer in all experiments
except the cation specificity (see Fig. 2) and the ionophore
experiments (see Fig. 7). The presence of azide during organelle
isolation and in import reactions did not affect import levels (data
not shown). The purpose of the azide was to inhibit any ATP synthesis
by the small amounts of mitochondria that may have been present in the
glyoxysome preparation (Brickner et al., 1997
), and thus remove any
endogenous ATP supplied by the mitochondria. Azide was not included in
the cation-specificity and ionophore experiments because the exact
level of ATP present was not critical. In addition, we wanted to
control precisely the amount of Na present in the import reactions when
testing for cation effects on import.

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| Figure 7.
Ionophores reduce the level of glyoxysomal protein
import. To determine whether a PMF plays a role in peroxisomal protein import, isolated glyoxysomes were preincubated for 20 min at room temperature with various ionophores (1-20 µm final
concentration). Import reactions were performed and analyzed as
described in Figure 1. The level of protease-resistant GLO present in
samples that had no ionophore added was set as 100% relative import
for comparison with the ionophore-treated samples. A representative
experiment is presented. A, GLO import into glyoxysomes in the presence
of nigericin or valinomycin, ionophores that collapse a single
component of the PMF. B, GLO import into glyoxysomes in the presence of ionophores that collapse the total PMF.
|
|
Each of the ionophore stock solutions was prepared in ethanol;
dilutions of the stocks were used in the import reactions presented in
Figure 7. Ethanol by itself, equivalent to the highest concentration present in the ionophore treatments (approximately 0.4%), had no
effect on the level of GLO import (data not shown). Import reactions
testing the effect of the Ca2+ ionophore A23187 also
contained 10 mm CaCl2; 10 mm CaCl2 was also present in the
controls and all import samples testing the Ca2+ ionophore
A23187; 10 mm KCl was included in the controls and import
samples testing valinomycin.
Quantitation
Levels of protein import were quantified by rehydrating manually
excised, radioactive gel slices in 30% hydrogen peroxide overnight at
50°C. Standard scintillation cocktail for aqueous samples was added
and samples were counted on a liquid scintillation counter (LS 6800, Beckman). Unless noted otherwise, the amount of protease-protected GLO
detected after 30 min of import in the presence of 5 mm ATP
was set at 100% relative import for comparison with the other
treatments. We routinely got import efficiencies of 5 to 15% of the
added radiolabeled protein imported into the isolated glyoxysomes in
control samples. This corresponds to an average import of 3.2 × 105 molecules GLO/µg of glyoxysomes. The actual
numbers for the experiments presented here are as follows: Table I, 5 mm ATP control, 3.4 × 105
molecules GLO/µg glyoxysomes; Figure 1, 5 mm ATP control,
3.2 × 105 molecules GLO/µg glyoxysomes;
Figure 2, 5 mm Mg2+ supplementing the
5 mm ATP(Na+) salt, 5.8 × 105 molecules GLO/µg glyoxysomes; Figure 3, 5 mm ATP control, 6.2 × 105
molecules GLO/µg glyoxysomes; Figure 4, 5 mm GTP control,
1.9 × 105 molecules GLO/µg glyoxysomes;
Figure 5, 5 mm ATP control, 1.7 × 105 molecules GLO/µg glyoxysomes; Figure 6, 5 mm ATP control, 1.4 × 105
molecules GLO/µg glyoxysomes; and Figure 7, no-ionophore control, 1.8 × 105 molecules GLO/µg glyoxysomes.
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|
Table I.
NTPs are capable of supporting import of GLO into
isolated glyoxysomes
Standard import assays were performed as described in Figure 1, except
that each reaction contained 5 mm NTP, as indicated. The
values presented are the average (± se) of three
experiments.
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|

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| Figure 1.
Import of GLO into glyoxysomes is energy
dependent. To characterize the NTP dependence of protein transport,
increasing concentrations of ATP ( ) or GTP ( ) were added to
standard import reactions (see ``Materials and Methods''). Before
addition to the import reactions, GLO translation products were
desalted on a Sephadex G-25 column to remove endogenous nucleotides and
other small molecules. The amount of radiolabeled GLO that remained
protease protected after import in the presence of 5 mm ATP
was set as 100% relative import for comparison with the other samples.
The average ± se of three independent experiments is
shown.
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| Figure 3.
Nonhydrolyzable ATP analogs cannot support GLO
import. To determine whether ATP hydrolysis is required for peroxisomal
protein import, increasing amounts of ATP, AMP-PCP, or AMP-PNP
(nonhydrolyzable analogs of ATP) were added to standard import
reactions. Before addition to the import reactions, GLO translation
products were desalted on a Sephadex G-25 column to remove endogenous
nucleotides and other small molecules (see ``Materials and Methods''). The amount of GLO imported into glyoxysomes in the
presence of 5 mm ATP was set at 100% for comparison with
the other samples in the same experiment. The average ± se
of three independent experiments is shown.
|
|

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| Figure 4.
GTP hydrolysis is required for peroxisomal protein
import. To determine whether the hydrolysis of GTP was required for
peroxisomal protein import, increasing amounts of either GTP or
GTP- -S were added to NTP-depleted import reactions, as described in
Figure 1. The average ± se of two independent experiments
is shown.
|
|

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| Figure 5.
AMP-PCP competes with ATP during protein import.
Isolated glyoxysomes were incubated with increasing amounts of ATP and
challenged with the nonhydrolyzable ATP analog, AMP-PCP, at the
concentrations indicated. Subsequent import reactions were performed as
described in Figure 1. The results shown are the average ± se of three separate experiments.
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| Figure 6.
GTP- -S inhibits ATP-dependent protein import.
To examine the effects of GTP- -S on ATP-dependent import, ATP and/or
excess GTP- -S were preincubated with isolated glyoxysomes for 5 min. Protein import was initiated by the addition of radiolabeled GLO proteins. The amount of radiolabeled GLO imported in the presence of 5 mm ATP was set as 100% relative import. Because of minor differences in the ways in which each replicate experiment was performed, a representative experiment is presented.
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|
 |
RESULTS |
NTP Requirement for Peroxisomal Protein Import
The energy requirements for the import of the leaf peroxisomal
protein GLO were assessed using an in vitro import assay system described by Brickner et al. (1997)
. Glyoxysomes were isolated from
dark-grown pumpkin cotyledons and incubated with radiolabeled GLO at
26°C for 30 min in the presence of various NTPs. The amount of
protein imported into the organelle was measured by protease resistance; all protease-resistant GLO was assumed to be protected by
the peroxisomal membrane.
As shown in Figure 1, the amount of GLO
imported increased with higher concentrations of ATP or GTP. Maximal
levels of import were observed at 5 mm ATP; no additional
GLO was imported in the presence of 10 mm ATP (Brickner et
al., 1997
). Low levels of protein import (approximately 18-22%,
relative to import at 5 mm ATP) were observed even when no
exogenous NTP was added to the import reaction. This background level
of import has been observed by others (Imanaka et al., 1987
; Horng et
al., 1995
) and may be mediated by NTP bound to a component of the
isolated organelles, to translation products, or to a cytosolic factor
present in the wheat germ lysate; free NTPs were removed by the
desalting procedure (Olsen et al., 1989
). GTP supported GLO import
nearly as well as ATP. Maximal GTP-dependent import was achieved at a
lower NTP concentration; only 1 mm GTP was needed, compared
with 5 mm ATP. This result suggests that GTP itself can be
used as an energy source for protein import. It does not distinguish
between a single energy-dependent process, which can use either ATP or
GTP to drive import, and two separate energy-requiring steps, one
dependent on ATP and the other dependent on GTP. Finally, the addition
of both ATP and GTP to the same import reaction stimulated import only
slightly more than the level in the control samples (data not shown).
In addition to ATP and GTP, other NTPs were assessed for their ability
to support peroxisomal protein import (Table
I). Standard import reactions were
performed in the presence of 5 mm NTP; the radiolabeled GLO
translation products were desalted to remove ATP added to the
translation reaction or present in the wheat germ lysate (see
``Materials and Methods''). With the exception of ITP, all NTPs
tested in our in vitro protein import system could serve as an
alternative energy source for peroxisomal protein import, although much
less efficiently than ATP.
Cation Specificity for Peroxisomal Protein Import
Standard import reactions were performed in the presence of 5 mm ATP, provided as the Mg2+ salt. The disodium
salt of ATP did not support GLO import unless equimolar levels of MgCl
or Mg2+ acetate were also added to the reactions (Fig.
2). There was no difference in the level
of protein import in reactions containing the Mg2+ salt of
ATP compared with reactions containing disodium ATP supplemented with
equimolar Mg2+ salts (data not shown); Mg2+
alone, i.e. without ATP, had no effect on import (data not shown). To
determine whether other cations could substitute for Mg2+
during protein import, various salts were added to import reactions in
the presence of disodium ATP. As seen in Figure 2, import in the
presence of the divalent cations Mn2+ and Ca2+
was slightly better than with Na alone, but was still significantly less than import in reactions supplemented with Mg2+.
K+ did not increase protein import at all above the
disodium ATP background level.
NTP Hydrolysis Is Required for Peroxisomal Protein Import
Hydrolysis of the high-energy bonds of ATP may cause a
conformational change in a component of the translocation machinery or
in the translocating protein itself to facilitate protein entry into
the organelle. To determine whether the hydrolysis of ATP is required
for peroxisomal protein import, we incubated isolated glyoxysomes and
radiolabeled GLO with the nonhydrolyzable ATP analogs AMP-PCP and
AMP-PNP. Figure 3 shows that these
nonhydrolyzable analogs of ATP did not substitute as an energy source
for glyoxysomal protein import. Thus, ATP hydrolysis is required at
some step during glyoxysomal protein import.
Because GTP was also capable of supporting peroxisomal protein import
(Fig. 1), the necessity of GTP hydrolysis was examined. GTP-
-S, a
nonhydrolyzable analog of GTP, was added to standard import reactions
in the absence of other NTPs, but was unable to increase the import of
GLO to greater than background levels (Fig.
4). Therefore, it appears that the
hydrolysis of GTP may also provide energy to drive peroxisomal proteins
across the membrane.
Two components of the chloroplast protein import machinery have been
shown to bind GTP (Kessler et al., 1994
). There are at least two
proteins involved in peroxisome biogenesis or function that have
ATP-binding domains (Swartzman et al., 1996
; Yahraus et al., 1996
). One
approach to the determination of whether the NTP hydrolysis requirement
for peroxisomal protein import is caused by direct binding of the NTP
by a protein factor (rather than an indirect metabolic role for NTP) is
the use of nucleotide competition experiments. For these experiments an
increasing concentration of the nonhydrolyzable ATP analog AMP-PCP was
preincubated with ATP and isolated glyoxysomes. The import reaction was
then initiated by the addition of radiolabeled GLO protein. As shown in
Figure 5, the amount of
protease-protected GLO decreased with increasing amounts of
nonhydrolyzable ATP analog even in the presence of ATP. This
competitive interaction between ATP and AMP-PCP indicates that there
may be a discrete nucleotide binding site on some component of the
translocation apparatus, or on another factor that is required for
import of proteins into peroxisomes.
To assess the effect of a nonhydrolyzable GTP analog on ATP-dependent
protein import levels, NTP competition experiments were performed using
GTP-
-S as the competitor. Competition was established by challenging
an import reaction containing ATP with an excess of GTP-
-S (Fig.
6). The addition of 10 mm
GTP-
-S significantly reduced the level of GLO imported into
glyoxysomes in the presence of 5 mm ATP. This suggests that
ATP and GTP are either competing for a common nucleotide binding site
on some component required for protein translocation, or that both NTPs
are required at different steps of protein import, one of which is
inhibited by the binding of GTP-
-S.
Effects of Ionophores on Peroxisomal Protein Import
To determine whether a PMF contributes to protein import, a
variety of ionophores was added to standard in vitro import reactions. Isolated glyoxysomes were preincubated for 20 min at room temperature with either nigericin (a
H+/K+ antiporter) to
collapse the pH gradient, valinomycin (a K+
uniporter) to dissipate the membrane potential, or gramicidin (a
channel former), CCCP (a H+ uniporter), A23187 (a
Ca2+/H+ antiporter), or
nigericin and valinomycin together to collapse both components of the
PMF. Each ionophore reduced the level of GLO import to roughly 50 to
60% of the control import reaction when present at 10 to 20 µm (Fig. 7). Nigericin and
valinomycin are typically used at micromolar to submicromolar
concentrations (Pfanner and Neupert, 1986
; Nicolay et al., 1987
; Cline
et al., 1992
; Theg and Scott, 1993
). In our experiments, low
concentrations (1 and 2 µm) of nigericin and valinomycin
had little or no effect on peroxisomal protein import (Fig. 7A).
However, when the total PMF is collapsed by 10 to 20 µm
CCCP, which is within the active range (Bellion and Goodman, 1987
;
Imanaka et al., 1987
; Nicolay et al., 1987
; Cline et al., 1992
; Theg
and Scott, 1993
; Wendland and Subramani, 1993
), peroxisomal protein
import was inhibited by approximately 40 to 50% (Fig. 7B). This
suggests that although a PMF across the peroxisomal membrane is not
absolutely required for protein import, it may be involved indirectly
in protein translocation into peroxisomes.
 |
DISCUSSION |
Energy is required to transport polypeptides through phospholipid
membranes. At least three possible sources for that energy have been
proposed: (a) energy released by induced conformational changes caused
by the initial interaction between the protein and the membrane; (b)
energy released by the hydrolysis of high-energy bonds found in ATP and
other NTPs; and (c) a PMF consisting of a transmembrane electric
potential and a pH gradient (Pugsley, 1989
). Different protein import
systems use each of these sources to varying degrees. We have addressed
only the latter two in this report. Our in vitro assay for protein
import into peroxisomes allows us to biochemically manipulate the exact
reaction conditions. For most experiments, we first removed any
endogenous NTPs from the GLO translation products and then added back
different forms of energy to examine their effects on protein
translocation.
We and others have shown that peroxisomal protein import is an
ATP-dependent process (Imanaka et al., 1987
; Soto et al., 1993
; Horng
et al., 1995
; Brickner et al., 1997
), but it is not yet known where in
the targeting and translocation pathway the energy is required or how
the energy is used. One possibility is that ATP is required by
cytosolic chaperones or other cytosolic factors to ensure proper
targeting of the protein to peroxisomes. In fact, the cytoplasmic
ATPase PXAAA1 from humans apparently stabilizes a soluble receptor
required for peroxisomal protein import (Yahraus et al., 1996
).
The Mg2+ salt of ATP has been shown to be
specifically required by some chaperones for optimal function (Miernyk,
1997
). The cation specificity experiments also showed that
Mg2+ is the preferred salt for protein import
into peroxisomes (Fig. 2). However, Mg2+ likely
has multiple functions in this pathway. For instance, a yeast
peroxisomal, membrane-associated, proton-translocating ATPase is
also Mg2+ dependent (Douma et al., 1987
).
A second possible role for NTPs during peroxisomal protein import is
suggested by the nucleotide binding sites identified on several
peroxisome-associated proteins (Verheyden et al., 1992
; Swartzman et
al., 1996
) as well as on two components of the chloroplast translocation machinery (Kessler et al., 1994
). When isolated glyoxysomes were preincubated with ATP and an excess of a
nonhydrolyzable NTP analog, subsequent GLO import was significantly
decreased (Figs. 5 and 6), suggesting that nucleotide binding to an
unidentified factor may be important for peroxisomal protein transport.
Both ATP and GTP were able to support GLO import in our in vitro assay
system (Figs. 1, 4-6). GTP-binding proteins are known to be involved
in several other transport pathways (Balch, 1990
; Pfeffer, 1992
;
Kessler et al., 1994
) and three small GTP-binding proteins have been
identified in rat peroxisomal membranes (Verheyden et al., 1992
). Thus,
it is possible that GTP has a direct role in peroxisomal protein
import. Although Wendland and Subramani (1993)
did not observe a
similar involvement of GTP-hydrolyzing proteins when they examined
peroxisomal protein import in permeabilized mammalian cells, they used
only 100 µm GTP-
-S in the presence of 1 mm
ATP and an ATP-regenerating system. The concentration of the GTP analog
may have been too low to observe a clear effect on the localization of
the microinjected peroxisomal protein.
It is possible that ATP and GTP are both necessary for protein import,
but at distinct energy-requiring steps. When a nonhydrolyzable analog
of GTP was added to import reactions in the presence of 5 mm ATP, the level of GLO import was lower than in reactions containing ATP only, but higher than the import seen with GTP-
-S alone (Fig. 6). This reduction in the amount of GLO imported in an
ATP-dependent manner indicates that there is either a common NTP-binding site for which ATP and GTP compete, or that the addition of
GTP-
-S inhibits a separate, GTP-requiring import step. At this time
we are unable to distinguish between these two options. It is likely
that ATP (and possibly GTP as well) has multiple roles and acts at
several different steps along the import pathway. This will make it
more complicated to determine exactly how each nucleotide is involved
in peroxisomal protein import.
Some protein transport systems also require a PMF for maximal
efficiency of translocation (Pfanner and Neupert, 1986
; Yamane et al.,
1987
; Wong and Buckley, 1989
; Cline et al., 1992
; Theg and Scott,
1993
), but it is not clear whether a PMF is present across the
peroxisomal membrane. Our results, using a broad range of ionophores,
suggest that a PMF is involved in peroxisomal protein transport,
although it is not absolutely required (Fig. 7). Each of the ionophores
tested consistently reduced the amount of GLO imported to approximately
50 to 60% of control import (in the absence of ionophores), indicating
that these ionophores inhibited protein import but did not abolish the
process. It appears that this inhibition is not caused by decreased
efficiency of import; GLO import in the presence of ionophores does not
recover even after longer reaction times (data not shown). It may be
that a PMF-requiring factor is depleted in the presence of ionophores such that translocation into the matrix is compromised. Alternatively, the pH of the peroxisome matrix may be important for optimal protein import; addition of ionophores (except valinomycin) would make it
difficult to maintain a constant pH in the matrix, resulting in lower
levels of peroxisomal protein import. A proton-ATPase on the peroxisome
membrane may be responsible for generating and maintaining the acidic
matrix of yeast peroxisomes (Douma et al., 1987
; Nicolay et al., 1987
;
del Valle et al., 1988
; Waterham et al., 1990
); however, neither an
ATPase nor an acidic matrix has yet been described for plant
peroxisomes.
There are two additional factors that must be considered. First, it is
important to note that low concentrations of nigericin or valinomycin
did not inhibit GLO import in vitro (Fig. 7A). There was slightly
greater inhibition of import when nigericin and valinomycin were added
together, but the results were not strictly additive (data not shown).
Nicolay et al. (1987)
found that 1 to 2 µm nigericin
and valinomycin together was sufficient to dissipate the pH
gradient across yeast peroxisomal membranes. GLO import into plant
peroxisomes was clearly inhibited by 5 to 10 µm nigericin
(Fig. 7A). When used at 10 µm, neither valinomycin nor
nigericin inhibited in vitro protein transport into rat liver peroxisomes, although no quantitation of these results was presented (Imanaka et al., 1987
). In most systems, nigericin and valinomycin are
expected to be active at very low concentrations, i.e. 1 µm or less (Pfanner and Neupert, 1986
; Cline et al.,
1992
; Theg and Scott, 1993
). Concentrations of nigericin or valinomycin
greater than 10 µm may have nonspecific or surfactant
effects (Reed, 1979
).
Second, there may be some differences in the ways in which peroxisomes
from different organisms respond to ionophores. When the total PMF was
collapsed by 10 µm CCCP, protein import into plant
peroxisomes was inhibited (Fig. 7B). Wendland and Subramani (1993)
found that 10 µm CCCP does not inhibit import into
peroxisomes in semipermeabilized mammalian cells; Imanaka et al. (1987)
observed no inhibition of in vitro protein transport into rat liver
peroxisomes in the presence of 10 µm CCCP. Neither group
presented any quantitation of these results. CCCP may have more effect
on yeast peroxisomes, although it is difficult to know for sure because
higher concentrations of CCCP have been used. The assembly of alcohol
oxidase is prevented by 25 µm CCCP, leading the authors
to conclude that a PMF is required for the import and maturation of
this yeast protein (Bellion and Goodman, 1987
). Using a
31P NMR assay, Nicolay et al. (1987)
found that
the pH gradient across yeast peroxisomal membranes is destroyed by 2 mm CCCP.
Thus, it may be that a single component of the PMF alone does not
affect peroxisomal protein import in plants; neither nigericin nor
valinomycin at low (active) concentrations inhibited GLO import (Fig.
7A). However, even 10 µm CCCP showed maximal inhibition of GLO import (Fig. 7B), suggesting that collapsing the total PMF
decreases protein import into peroxisomes in vitro. It seems unlikely
that the PMF is directly providing necessary energy for the
translocation event. A secondary role for a PMF, such as in maintaining
a pH gradient across the membrane, may be responsible for the
consistent level of inhibition we observed in the presence of each
ionophore. It is not possible to conclude anything definitive based
solely on results provided by experiments with a single ionophore at a
single concentration. Variables such as the size of the compartment and
the magnitude of the pH gradient across the membrane may also influence
the behavior of individual ionophores (Reed, 1979
). We have tested the
effects on peroxisomal protein import of a wide range of ionophores at
many concentrations, and we conclude that a PMF appears to play a role
in peroxisomal protein import, perhaps through an indirect effect, but
that the energy of a PMF is not absolutely required for protein
translocation.
In a continuing effort to understand the cellular requirements and
mechanisms of higher plant peroxisomal protein import, we have
extensively characterized the energy requirements for GLO import into
glyoxysomes in vitro. We have firmly established that energy from NTPs
is required during protein translocation in peroxisomes.
However, future studies are needed to define exactly where and how
this energy is being used. Detailed investigations may lead to
mechanistic models that include energy-requiring cytosolic factors
and/or peroxisome-specific factors that are necessary to translocate
peroxisomal proteins through the lipid bilayer.
 |
FOOTNOTES |
1
This work was funded by a grant from the U.S.
Department of Agriculture to L.J.O. D.G.B. was supported in part
by a fellowship from the Cellular Biotechnology Training Program
(National Institutes of Health grant no. GM08353).
*
Corresponding author; e-mail ljo{at}umich.edu; fax
1-734-647-0884.
Received June 18, 1997;
accepted October 8, 1997.
 |
ABBREVIATIONS |
Abbreviations:
A23187, calcinomycin.
AMP-PCP, methylene
adenosine 5
-triphosphate.
AMP-PNP, 5
-adenylylimidodiphosphate.
CCCP, carbonyl cyanide m-chloro-phenylhydrazone.
GLO, glycolate oxidase.
NTP, nucleotide triphosphate.
PMF, protonmotive
force.
 |
ACKNOWLEDGMENTS |
We thank Jason Brickner, Wendy Crookes, Yan Lin, and Aaron
Liepman for many helpful discussions. Olivia Bottum and Jessica McHie
provided excellent technical assistance. Drs. Charles Yocum and Eran
Pichersky contributed useful advice and comments during the preparation
of the manuscript.
 |
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