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Plant Physiol. (1998) 116: 379-385
Synthesis and Phosphorylation of Maize Acidic Ribosomal
Proteins1
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ABSTRACT |
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The objective of this research was to determine the role of acidic ribosomal protein (ARP) phosphorylation in translation. Ribosomes (Rbs) from germinated maize (Zea mays L.) axes had four ARP bands within 4.2 to 4.5 isoelectric points when analyzed by isoelectric focusing. Two of these bands disappeared after alkaline phosphatase hydrolysis. During germination a progressive change from nonphosphorylated (0 h) to phosphorylated ARP (24 h) forms was observed in the Rbs; a free cytoplasmic pool of nonphosphorylated ARPs was also identified by immunoblot and isoelectric focusing experiments. De novo ARP synthesis initiated very slowly early in germination, whereas ARP phosphorylation occurred rapidly within this period. ARP-phosphorylated versus ARP-nonphosphorylated Rbs were tested in an in vitro reticulocyte lysate translation system. Greater in vitro mRNA translation rates were demonstrated for the ARP-phosphorylated Rbs than for the non-ARP-phosphorylated ones. Rapamycin application to maize axes strongly inhibited S6 ribosomal protein phosphorylation, but did not interfere with the ARP phosphorylation reaction. We conclude that ARP phosphorylation does not depend on ARP synthesis or on ARP assembly into Rbs. Rather, this process seems to be part of a translational regulation mechanism.
A distinctive characteristic of eukaryotic Rbs is the
phosphorylation status of their ARPs (Hershey, 1989 Assembly of ARPs in the Rb occurs in the cell cytoplasm, where ARPs
constitute a free protein pool (Mitsui et al., 1988 The expression of these proteins in yeast has been demonstrated to be
at least partially autoregulated by the pool size of the reciprocal
isoforms (Bermejo et al., 1994 Seed embryonic axes reinitiate protein synthesis at the beginning of
germination, based primarily on stored mRNA and preformed Rbs. In maize
seeds ribosomal protein synthesis has been demonstrated to occur early
in germination (Beltrán et al., 1995 Previous work from our laboratory has shown that maize Rbs contain two
ARPs similar to the mammalian ribosomal proteins P1 and P2, which
actively incorporate 32P-orthophosphate during
germination in a tightly regulated manner (Pérez-Méndez et
al., 1993 Biological Material
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INTRODUCTION
Top
Abstract
Introduction
Methods
Results
Discussion
References
). Studies on ARPs from different eukaryotes (Zinker and Warner, 1976
; Shimmin et al.,
1989
; Wool et al., 1991
) have demonstrated that these proteins are
conserved through evolution, particularly at the carboxy-terminal end
(Remacha et al., 1995b
). They have been classified into two groups,
namely P1 and P2 (Wool et al., 1991
). These proteins are located in the
stalk of the large ribosomal subunit (Strycharz et al., 1978
) and are
known to participate in translation by interacting with translation
elongation factors (Sánchez-Madrid et al., 1979
; MacConnell and
Kaplan, 1982
).
; Saenz-Robles et
al., 1990
). Studies regarding ARP gene identification have reported the
presence of two genes for these proteins in mammals (Wool et al.,
1991
). Lower eukaryotes, however, have more ARP; four have
been reported in yeast (Remacha et al., 1990
; Beltrame and Bianchi,
1990
) and even eight have been reported for Trypanosoma cruzi (Vázquez et al., 1992
). In
plants two different P-protein genes have been found for rice
(Goddemeier et al., 1996
) and three for maize (Zea mays L.)
(Bailey-Serres et al., 1997). The plant P proteins showed homology to
the carboxy-terminal ends of their animal counterparts (Ballesta and
Remacha, 1996
).
). However, the mechanism that regulates
ARP assembly and/or exchange within the Rb is not fully understood. For
some time it was thought that ARP phosphorylation played a relevant
role in the stability of ARP-Rb association (Naranda and Ballesta,
1991
). However, this role was not further supported by in vivo evidence
showing that ARP assembled into Rbs in yeast mutants lacking the target
phosphorylable Ser residue (Ballesta and Remacha, 1996
).
). However, precise
information regarding de novo ARP synthesis and/or ARP assembly into
Rbs during this period is not available at present.
). However, it is not known whether ARP phosphorylation has a
relevant role in regulating translation within this period. The present
research focuses on the course of ARP synthesis and phosphorylation in
maize embryonic axes during germination and evaluates the
phosphorylation role ARPs in Rb assembly and translation.
![]()
MATERIALS AND METHODS
Top
Abstract
Introduction
Methods
Results
Discussion
References
). The axes were
incubated for different periods under sterile conditions on Murashige
and Skoog medium (Murashige and Skoog, 1962
) in the dark at 25°C.
Specific experimental conditions are described in more detail below.
ARP Isolation
Rbs were isolated from axes according to the method of Scharf and Nover (1982), with modifications as follows: the axes were homogenized to a fine powder in liquid N2 and resuspended in 10 volumes of extraction buffer A1 (20 mm Tris-HCl, pH 7.8, 5 mm MgCl2, 20 mm KCl, 1 mm NaF, and 0.5%
-glycerophosphate). The homogenate was
centrifuged at 27,000g for 30 min, and then at 250,000g through a Suc cushion (0.5 m Suc and
0.5 m KCl in buffer A1) for 3.5 h. The ribosomal
pellet was resuspended (20 mg/mL) in buffer containing 10 mm Tris-HCl, pH 7.4, 12 mm
MgCl2, 80 mm KCl, and 5 mm
-mercaptoethanol plus 1 volume of ammonium buffer (1.5 m NH4Cl, 20 mm
MgCl2, 3 mm
-mercaptoethanol, and
20 mm Tris-HCl, pH 7.4) and stirred for 20 min in an ice
bath. Ethanol was added slowly until a 1:1 (v/v) mixture was obtained.
The mixture was stirred for 20 min more in the ice bath and centrifuged
at 10,000g. The pellet was discarded and ARPs were
precipitated from the supernatant with 2.5 volumes of acetone at
20°C overnight. Further purification of ARPs was achieved by
carboximethyl-cellulose treatment, as described by Juan-Vidales et al.
(1981). Proteins were measured by the Bradford technique (Bradford,
1976
) were the
source for ARP isolation, following the same procedure. These proteins
were used to raise rabbit antibodies by a conventional protocol.
Cytoplasmic ARPs
The postribosomal supernatant from the axes homogenate after the 250,000g centrifugation was precipitated with 5 volumes of acetone at
20°C, allowed to stand overnight, and centrifuged at
5,000g. After the acetone evaporated, the pellet was
ethanol-ammonium extracted, as indicated in the procedure for ARP
isolation. ARPs were resuspended in buffer (10 mm Tris-HCl,
pH 7.5, 150 mm NaCl, 1 mm EDTA, and 0.05%
Nonidet P-40) and immunoprecipitated with rat liver ARP antibodies
(1:1,500) as previously reported (Sánchez de Jiménez et
al., 1997Polyacrylamide Gel IEF of Ribosomal Proteins
To analyze ARPs by IEF, whole Rbs (2.5-5.0 OD260) were placed on 5% polyacrylamide, 8 m urea gels, and 2.5 to 5.0 pH ampholytes (Sigma) for 18 h in a vertical slab-gel unit from Hoefer (San Francisco, CA) (Juan-Vidales et al., 1984PAGE of ARPs
ARPs were purified from maize axes by Rb ethanol-ammonium extraction and carboxy-methyl cellulose chromatography (Pérez-Méndez et al., 1993Alkaline-Phosphatase Treatment of Rbs
Isolated Rbs (40-50 µg) from embryonic axes of 24-h germinated seeds were resuspended in 90 µL of 20 mm Hepes-KOH, pH 7.6, 5 mm magnesium acetate, 125 mm potassium acetate, and 6 mm
-mercaptoethanol buffer; 1.5 units of
alkaline-phosphatase Sepharose beads (Sigma) were added. Reaction
mixtures were incubated at 37°C for 60 min, and then centrifuged
(12,000g for 20 min) to remove insoluble Sepharose. The
supernatant was analyzed by IEF.
Rb Autophosphorylation
Rbs (approximately 5.0 OD260) from ungerminated maize axes were incubated in 250 mm Hepes-KOH buffer, pH 7.6, containing 0.65 mm
-mercaptoethanol,
0.925 mm magnesium acetate, 0.8 mm ATP, and 80 mm
-glycerophosphate in a final volume of
150 µL, according to Sepúlveda et al. (1995)Slot-Blot Analysis
Ten micrograms of ARPs or 120 µg of total ribosomal proteins purified by the method of Ramjoué and Gordon (1977)In Vivo Synthesis of ARPs
Embryonic axes (400 mg) were incubated for either 4 or 14 h at 25°C, and pulse labeled with 100 µCi of [35S]Met (specific activity 1155 Ci mmol
1, DuPont NEN) for the last hour of
incubation in a final volume of 1 mL. A control group of 14-h incubated
axes was also prepared but in the presence of
-amanitin (12 µg/mL)
(Sigma). The axes were then rinsed three times with distilled water and
frozen in liquid N2 until used. The Rbs were
isolated from the axes as indicated, and the ARPs were extracted and
resolved by IEF. Slab gels were treated for fluorography by soaking in
amplifier solution (Amersham) for 20 min, dried under a vacuum in a gel
dryer (Bio-Rad), and exposed to Hyper film (Amersham) for 2 weeks.
Alternatively, the gels were cut at the ARP bands and counted in a
liquid-scintilation counter (Packard, Meriden, CT).
In Vitro Translation System
A reticulocyte lysate translation kit (Boehringer Mannheim) was used following the manufacturer's standard assay. The lysate was depleted of its Rbs by ultracentrifugation (Sánchez de Jiménez et al., 1997
1, DuPont NEN) were added to the system in
a final volume of 25 µL. Mixtures were incubated at 30°C and
aliquots (2 µL) were taken every 5 min for 25 min. The samples were
precipitated with 10% (w/v) TCA containing 2% (w/v) casein
hydrolysate (Sigma), kept for 10 min on ice, boiled for 15 min, cooled
on ice, and filtered through GF/C filter paper (Whatman). The filters
were washed four times with 5% TCA containing 0.1% casein
hydrolysate, dried, and counted in a liquid-scintillation counter
(Packard).
| |
RESULTS |
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|
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Characterization of Maize Axes ARPs
Rbs isolated from germinated maize axes were analyzed by IEF on a 2.5 to 5.0 pH range. The silver nitrate-stained gel showed four ARP bands of pI values ranging from 4.2 to 4.5 (Fig. 1A, IEF). Rbs previously treated with alkaline phosphatase and then analyzed by this procedure showed only two bands, the upper, less-acidic bands (Fig. 1B, IEF). As a control, maize ARPs purified from these Rbs were analyzed by SDS-PAGE. Two bands of 14.5 and 16 kD were observed (Fig. 1C, SDS-PAGE), as previously reported (Pérez-Méndez, et al., 1993
|
De Novo Synthesis of ARPs during Germination
Relevance of ARP Phosphorylation on the Translation Process
ARP interaction with elongation factors has been demonstrated to
speed up protein synthesis in eukaryotic organisms
(Sánchez-Madrid et al., 1981 Received June 18, 1997;
accepted October 13, 1997.
Abbreviations:
ARP(s), acidic ribosomal protein(s).
Rb(s), ribosome(s).
The authors thank Dr. J.P.G. Ballesta for the yeast ARP
antibodies and for providing laboratory and technical facilities to perform IEF analysis of ARP Rbs.
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Figure 2.
IEF analysis of ARPs from germinating seed axes.
Rbs from axes germinated for 0, 4, 14, or 24 h, and for 0 h
after 30 min of autophosphorylation (0-P) were obtained as indicated in
``Materials and Methods''. Rbs (40-45 µg) from each experimental
set were resolved by IEF using ampholines, 2.5 to 5.0 pH range, and
silver nitrate stained to resolve their ARP content. Letters indicate
the IEF position of the ARPs as above.

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[in a new window]
Figure 3.
Either acidic cytoplasmic proteins isolated from
24-h germinated axes, as indicated in ``Materials and Methods'' (Sn),
or their ribosomal proteins (Rb) (control) were used for these
experiments. A, Ten micrograms of each protein group was applied to the
nitrocellulose membrane and tested by slot-blot analysis using rat ARP
antibodies (diluted 1:1500). The second antibody was rabbit IgG
conjugated to peroxidase (diluted 1:1000). B, The same protein samples
were also analyzed by IEF and silver stained. Letters indicate the IEF
position of the ARPs as above. The experiments were reproduced with
cytoplasmic acid proteins from 0-h axes instead of the 24-h set, with
very similar results.
-amanitin during germination showed decreased
[35S]Met incorporation into ARPs but not total
inhibition at 14 h of germination (Fig. 4, 14
), suggesting the
presence of stored ARP mRNAs in the ungerminated axes. This
interpretation is further supported by recent experiments showing P2
mRNA among the stored mRNAs by northern-blot analysis using a
homologous maize P2 cDNA probe (data not shown). Later, new mRNA
transcription seems to occur.

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[in a new window]
Figure 4.
Maize embryonic axes incubated in Murashige and
Skoog medium were pulse labeled with 100 µCi of
[35S]Met during the last hour of incubation. The Rbs were
isolated and ARPs were analyzed by IEF in a pH range of 2.5 and 5.0. The gel was prepared for fluorography as described in ``Materials and Methods''. Approximately 10,000 cpm were loaded per well. The lanes
correspond to: axes incubated for 4 or 14 h of germination (4 and
14, respectively), and axes allowed to imbibe with
-amanitin (12 µg/mL) then incubated for 14 h and [35S]-labeled
as above (14
). The
-amanitin incubating conditions used here
ensure large mRNA transcription inhibition (<5% of total RNA
remaining transcription) (Beltrán et al., 1995
). Arrows point to
the position of the labeled bands. At 8 h the labeled pattern was
like the 4-h pattern. These experiments were reproduced at least twice,
with similar results.
View this table:
Table I.
Synthesis of cytoplasmic ARPs:
[35S]Met incorporation
Maize axes (400 mg) were incubated for the stated periods and
[35S]Met (100 µCi) was added during the last hour of
incubation (see ``Materials and Methods''). The cytoplasmic ARPs were
immunoprecipitated and counted in a scintillation counter.
) showed that S6 ribosomal protein of maize axes was
phosphorylated during germination. Phosphorylation of this protein has
been reported to stimulate translation of specific mRNAs, the 5
TOP
(terminal oligopyrimidine) mRNAs, (Jefferies et al., 1994
; Terada et
al., 1994), as well as some Cap-dependent maize mRNAs (Sánchez de Jiménez et al., 1997
). Therefore, a translation experiment was performed comprising S6-nonphosphorylated, and ARP-phosphorylated Rbs
to confirm the role of ARP phosphorylation in translation. Rapamycin, a
strong, specific inhibitor of pp70S6k, the enzyme
responsible for in vitro phosphorylation of S6 RP (Price et al., 1992
),
was used for this purpose. Inhibition of S6 RP phosphorylation by
rapamycin in maize axes has already been demonstrated (E. Sánchez
de Jiménez, E. Beltrán-Peñá, and A. Ortíz-López, unpublished data), and a control experiment was also designed to demonstrate that this inhibitor has no effect on
ARP phosphorylation. This was confirmed by Rb IEF analysis of
rapamycin-exposed axes (data not shown). The in vitro-translation experiment was then performed with Rbs extracted from 18-h
germinated maize axes that were previously
rapamycin-inhibited or that had not been rapamycin-inhibited during the
last 2 h of incubation and compared with the 0-h (nonphosphorylated)
Rbs. The rate of protein synthesis measured with these Rbs showed
faster [35S]Met incorporation into proteins in
the 18-h Rb system than in the one with the Rbs from ungerminated axes
(0 h), regardless of rapamycin application (Fig.
5). Calculation of the correspondent slopes showed mean values of 632 ± 53 for the 0-h Rbs versus
1434 ± 292 for the 18-h Rbs, indicating significant slower
translation rates for the ARP-nonphosphorylated than the
ARP-phosphorylated Rbs (P
0.01).

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Figure 5.
An in vitro reticulocyte lysate translation system
was used for testing maize Rb translation efficiency. Axes from 0 and
18 h of germination were treated or not treated with 0.1 µm rapamycin for the last 2 h of incubation, as
indicated in ``Materials and Methods''. The Rbs were isolated and
used for translation. The translation system contained: 10 µL of Rb-depleted reticulocyte lysate, maize Rbs (0.3-0.5 OD260) either from ungerminated (nonphosphorylated ARPs) or
germinated (phosphorylated ARPs) axes, 20 µg of total axes RNA, and
50 µCi of [35S]Met in a final volume of 25 µL. The
mixture was incubated at 30°C. Every 5 min, 3-µL aliquots were
taken and applied to the GF/C filter paper and washed. The dried
membranes were counted and plotted versus time. These data are
representative of at least three different experiments. A, Rbs from
ungerminated (0 h) (
) or germinated (18 h) (
) axes. B, S6
phosphorylated rapamycin-inhibited Rbs from ungerminated (0 h) (
) or
germinated (18 h) (
) axes.
![]()
DISCUSSION
Top
Abstract
Introduction
Methods
Results
Discussion
References
; Juan-Vidales et al., 1984
). The
lack of these proteins in yeast null mutants has been shown to result
in very slow cell growth rates (Remacha et al., 1995a
). However, the
ARP phosphorylation role in the translation process of eukaryotic
systems remains unclear. For some time it was thought that ARP
phosphorylation was required for ARP exchange/assembly between the Rb
and the cytoplasm (Sánchez-Madrid et al., 1981
; Saenz et al.,
1990). Later, evidence from in vivo site-directed mutation experiments in yeast showed normal ARP ribosomal content in the mutants lacking the
target ARP phosphorylable Ser residue (Remacha et al., 1995b
).
), and seems to be independent from ARP de novo synthesis. At 4 h of
germination, Rbs showed little incorporation of
[35S] label in their ARPs (Fig. 4), whereas, at
this time, ARP phosphorylation in the Rbs is already occurring rapidly
(Fig. 2) (Pérez-Méndez et al., 1993
). However, it cannot be
stated if ARP phosphorylation occurs after ARP has been assembled into
the Rb or if it is a cytoplasmic event followed by rapid ARP exchange
with the Rb unphosphorylated ARPs.
), the subunit where ARPs are assembled.
This ARP kinase has been shown to phosphorylate efficiently in vitro
the ARPs already assembled in the Rb (Fig. 2B) (Sepúlveda et al.,
1995
), suggesting that the first proposition might be most probable.
This is also supported by the finding of a nonphosphorylated cytoplasmic pool of ARPs in both the ungerminated and the germinated maize axes (Fig. 3). Moreover, [35S]-ARPs were
observed mainly in the nonphosphorylated forms of the Rbs in the
pulse-labeled experiment at 14 h of germination (Fig. 4),
indicating that de novo-synthesized ARPs were incorporated into the Rbs
in their nonphosphorylated form. Thus, the developmentally regulated
ARP phosphorylation observed in the Rbs during germination (Fig. 2)
must have a biological meaning other than just being a requirement for
ARP Rb assembly.
1
This work was supported by the Dirección
General de Asuntos del Personal Académico, Universidad Nacional
Autonoma de Mexico (grant nos. IN200793 and IN217496).
![]()
FOOTNOTES
*
Corresponding author; e-mail estelas{at}servidor.unam.mx; fax
52-5-6-22-53-29.
![]()
ABBREVIATIONS
![]()
ACKNOWLEDGMENTS
![]()
LITERATURE CITED
Top
Abstract
Introduction
Methods
Results
Discussion
References
untranslated region of the mRNA for acidic ribosomal phosphoproteins on gene expression and protein accumulation.
J Biol Chem
269:
3968-3973
Copyright Clearance Center: 0032-0889/98/116/0379/07
© 1998 American Society of Plant Physiologists
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R. Shin, S. Alvarez, A. Y. Burch, J. M. Jez, and D. P. Schachtman Phosphoproteomic identification of targets of the Arabidopsis sucrose nonfermenting-like kinase SnRK2.8 reveals a connection to metabolic processes PNAS, April 10, 2007; 104(15): 6460 - 6465. [Abstract] [Full Text] [PDF] |
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