Plant Physiol. (1998) 116: 1073-1081
Contribution of Malic Enzyme, Pyruvate Kinase,
Phosphoenolpyruvate Carboxylase, and the Krebs Cycle to
Respiration and Biosynthesis and to Intracellular pH Regulation during
Hypoxia in Maize Root Tips Observed by Nuclear Magnetic Resonance
Imaging and Gas Chromatography-Mass Spectrometry1
Shaune Edwards,
Bich-Ty Nguyen,
Binh Do, and
Justin K.M. Roberts*
Department of Biochemistry, University of California, Riverside,
California 92521
 |
ABSTRACT |
In vivo pyruvate synthesis by malic
enzyme (ME) and pyruvate kinase and in vivo malate synthesis by
phosphoenolpyruvate carboxylase and the Krebs cycle were
measured by 13C incorporation from
[1-13C]glucose into glucose-6-phosphate, alanine,
glutamate, aspartate, and malate. These metabolites were isolated from
maize (Zea mays L.) root tips under aerobic and
hypoxic conditions. 13C-Nuclear magnetic resonance
spectroscopy and gas chromatography-mass spectrometry were used
to discern the positional isotopic distribution within each metabolite.
This information was applied to a simple precursor-product model that
enabled calculation of specific metabolic fluxes. In respiring root
tips, ME was found to contribute only approximately 3% of the pyruvate
synthesized, whereas pyruvate kinase contributed the balance. The
activity of ME increased greater than 6-fold early in hypoxia, and then
declined coincident with depletion of cytosolic malate and aspartate.
We found that in respiring root tips, anaplerotic
phosphoenolpyruvate carboxylase activity was high
relative to ME, and therefore did not limit synthesis of pyruvate by
ME. The significance of in vivo pyruvate synthesis by ME is discussed
with respect to malate and pyruvate utilization by isolated
mitochondria and intracellular pH regulation under hypoxia.
 |
INTRODUCTION |
The role of malate in many important metabolic processes
contributing to energy production, biosynthesis, and mineral nutrition in plants has long been recognized (Lance and Rustin, 1984
), yet our
quantitative understanding of how the many reactions of malate metabolism contribute to plant function is rudimentary. One notable example concerns the fueling of mitochondria in plant cells
oxidizing carbohydrate. It has been widely considered that malate is an important substrate for mitochondria, such that a significant fraction
of glycolytic products enters the Krebs cycle via the combined action
of PEPC, malate dehydrogenase, and ME rather than via PK (see Fig.
1) (Fowler, 1974
; Day and Hanson, 1977
;
Wiskich, 1980
; Bryce and ap Rees, 1985
). However, the validity of this model remains to be unequivocally demonstrated in intact plant cells
(for review, see ap Rees, 1990
; Douce and Neuburger, 1990
; Lambers,
1990
).

View larger version (20K):
[in this window]
[in a new window]
| Figure 1.
Schematic representation of glycolysis and the
Krebs cycle highlighting the theoretical isotopic distribution ( )
within specific metabolites derived from [1-13C]Glc.
Numbers represent routes of synthesis for the specific metabolites
discussed in the text. Enzymes: (a) PK; (b) PEPC; (c) Ala
aminotransferase; (d) ME; (e) Glu dehydrogenase, Glu synthetase/Glu synthase, and aminotransferases; and (f) Asp aminotransferase. PPP,
Pentose phosphate pathway.
|
|
One general strategy to solve this problem relies on using NMR and/or
GC-MS to observe the metabolism of 13C-labeled
substrates, and then analyzing labeling patterns by various models to
deduce metabolic fluxes (for review, see Künnecke, 1995
). We
previously presented qualitative evidence that in
[1-13C]Glc-labeled maize (Zea mays
L.) root tips ME is active under hypoxia (Roberts et al., 1992
), and
may play a role in cytoplasmic pH regulation via proton consumption
(Davies, 1986
; Roberts et al., 1992
). Dieuaide-Noubhani et al. (1995)
compared the labeling pattern of Glu and Ala in oxygenated maize root
tips labeled with [1-13C]Glc, and, using a
complex metabolic model, deduced that little malate was converted to
pyruvate via ME.
In the present study we measured 13C enrichment
in precursors and products for reactions catalyzed by ME and PK, and
deduced relative fluxes through each pathway using a simpler model. We show that ME has very low activity in respiring root tips, but is
activated approximately 6-fold during the first few minutes of hypoxia.
We also used this simple precursor-product approach to measure the in
vivo activities of other important enzymes of malate metabolism, PEPC,
and enzymes of the Krebs cycle, and discuss their role in respiration
and biosynthesis.
 |
MATERIALS AND METHODS |
Maize (Zea mays L.) seeds (B73, Pioneer Hi-Bred
International, Des Moines, IA) were soaked for approximately 24 h
in flowing, deionized water, and were then allowed to germinate between
wet paper towels in a foil-covered tray for approximately 48 h.
Root tips 4 to 5 mm long were cut on ice with a razor blade and washed with deionized water to remove root cap slime. Washed root tips were
transferred to 10-mL syringe barrels, each with a plastic mesh septum.
Perfusion Conditions
Four 10-mL syringes containing 2 to 6 g of root tips were
connected in series using tubing and rubber stoppers. A peristaltic pump recirculated 100 mL of oxygenated medium for 12 to 15 h at 30 to 40 mL/min at room temperature. This medium contained 50 mm [1-13C]Glc in 10 mm
Mes (brought to pH 6.5 with Tris), 0.1 mm
CaSO4, 50 mg/L gentamycin, 2.5 mg/L amphotericin,
and 2.5 mm
(NH4)2SO4. [1-13C]Glc was obtained from Isotech
(Miamisburg, OH). For experiments requiring hypoxic treatment, samples
were perfused with N2-saturated 0.1 mm CaSO4 at 10 to 20 mL/min without
recirculation.
Individual syringes were removed at the appropriate times and
immediately frozen in liquid N2 and stored until
extraction. The treatment conditions used here are similar to those
used in earlier studies of metabolism in maize root tips (Roberts et
al., 1992
; Roberts and Xia, 1996
). 13C labeling
of root tip metabolites to steady state was done with recirculation to
minimize the use of expensive [1-13C]Glc.
(NH4)2SO4
and Glc were also omitted from the hypoxia treatment because no
significant effects of these components on hypoxic metabolism were
found in earlier experiments (Roberts et al., 1992
).
Metabolite Extraction and Fractionation
Low-molecular-weight metabolites were extracted with 4%
perchloric acid and centrifuged at 2000g. TABA (100 or 50 mm) was added to each sample just before extraction as an
internal standard. The supernatant was neutralized with KOH,
centrifuged, and placed on an H+-exchange column
(model AG50W-X8, Bio-Rad). After being washed with water,
amino acids were eluted with 4 n
NH4OH, lyophilized, and reconstituted in 800 µL
of 2H2O for NMR analysis.
After NMR analysis, amino acids were further fractionated to separate
Glu and Asp from other amino acids, because the high temperatures of
derivatization and GC-MS converts Gln and Asn into derivatives of Glu
and Asp, respectively. This was accomplished by conversion of an AG
1-X8 chloride column (Bio-Rad) to an acetate column using 3 m sodium acetate. The column was then washed with three bed
loads of deionized water. Amino acids were removed from the NMR tube
and placed on the column. One-milliliter fractions were eluted with 0.5 m acetic acid, which resulted in three ninhydrin peaks.
Peaks were pooled, lyophilized, and reconstituted in 700 µL of
2H2O.
Glu and Asp were identified as the second and third peaks,
respectively, by NMR. All other amino acids were eluted in the first
peak (in column void volume). These fractions were frozen at
20°C
and saved for derivatization and GC-MS analysis. The total enrichment
of Glu, as measured by GC-MS, was not statistically different from the
total enrichment of unseparated Glu and Gln measured in the total amino
acid fractions (data not shown). Organic acids, including Glc-6-P,
eluted in the void volume of the H+-exchange
column were separated from neutral metabolites by anion-exchange chromatography (AG 1-X8 formate, Bio-Rad). Organic acids and Glc-6-P were eluted in bulk with 5 n formic acid. The eluant was
split into aliquots for either GC-MS analysis of malate or
dephosphorylation and derivatization of Glc-6-P before drying and
further processing (described below). Ala, Asp, Glu, and malate were
assayed enzymatically (Bergmeyer, 1974
).
NMR Spectroscopy
All NMR spectra were obtained using a spectrometer (model GN500,
General Electric). 13C-NMR data were collected at
125.7 MHz with pulses every 15 s, a spectral width of 24 kHz, and
32,000 data points. TABA, which has distinct signals across the
13C chemical-shift range, was used as an internal
standard, and proton decoupling was applied only during data
acquisition, which, together with the long pulse interval, alleviated
the need for nuclear Overhauser corrections (Roberts and Xia, 1995
).
Assignments are based on correspondence with chemical shifts of
standards (Roberts et al., 1992
; Roberts and Xia, 1995
).
GC-MS
Amino acid samples (25 µL) were converted to
heptafluorobutyryl isobutyl esters using a protocol modified from
MacKenzie and Tenaschuk (1979)
. Samples were lyophilized in
Teflon-capped vials to which 200 µL of 3 n HCl in
isobutanol was added. Reaction vials were then placed in a silicon oil
bath at 120°C for 20 min. Samples were allowed to return to room
temperature, and then unreacted reagents were evaporated in an
N2 stream. Next, 140 µL of ethyl acetate and 60 µL of heptafluorobutyric anhydride (Sigma) were added to dried
samples, which were then heated at 150°C in the oil bath for 10 min.
Samples were again evaporated in an N2 stream and
resuspended in ethyl acetate to a suitable concentration for GC-MS.
Malate was derivatized as a heptafluorobutyryl isobutyl ester, as
described above. This novel derivative of malate provided three ions
(m/e 443, 387, and 331) that were similar in abundance.
Glc-6-P was dephosphorylated by the addition of 20 to 100 units of
alkaline phosphatase (Sigma) for 2 h at room temperature. Samples
were then deproteinized with 4% perchloric acid (as described above
under "Metabolite Extraction and Fractionation"). The released Glc
was derivatized to an aldonitrile penta-acetate, as described by Katz
et al. (1989)
. Lyophilized samples were mixed with 0.5% (w/v)
hydroxylamine hydrochloride in pyridine and heated in an oil bath at
100°C for 1 h. Unreacted reagents were evaporated in a stream of
N2. One hundred microliters of pyridine and 20 µL of acetic anhydride were added to the evaporated sample and left
to react for 20 min at room temperature. Excess reagents were again
evaporated in a N2 stream and samples were
brought to volume with ethyl acetate for analysis by GC-MS.
One microliter of each derivatized sample (100- 500 ng/µL) was injected into a single-quadrapole gas
chromatograph-mass spectrometer (models HP5890 and HP5989,
respectively, Hewlett-Packard), and the data were analyzed by the Chem
Station program (HP59940, Hewlett-Packard). The source temperature was
maintained at 200°C. Methane chemical ionization resulted in the
molecular ion or the molecular ion-57 (the isobutyl group) as the base
ion for all metabolites measured. The mass scan range was m/e 60 to
600. Single-ion monitoring was then used to measure the abundances of
m/e 286, 287, 288, and 289 for Ala; m/e 442, 443, and 444 for Asp; m/e
456, 457, and 458 for Glu; m/e 443, 444, and 445 for malate; and m/e
328, 329, and 330 for Glc. Derivatized products were confirmed with
standards and, except for malate, published values (MacKenzie and
Hogge, 1977
; MacKenzie and Tenaschuk, 1979
; Katz et al., 1989
). Peak areas were used for quantitation. All analyses were performed on a
30-m × 0.25-mm capillary column of 5% phenyl (DB 5, J&W
Scientific, Folsom, CA) with He carrier gas at 4 mL/min. The
temperature program for amino acids and malate was 60 to 250°C
at 20°C/min, and was isothermal for Glc at 235°C. The injector
temperature was maintained at 240°C for all applications.
Isotopically labeled standards mixed with natural abundance standards
to four different 13C enrichments were used to
generate standard curves. The known atom percent of the excess
13C was plotted against the relative abundances
of the specific ion clusters represented as:
|
(1)
|
where the number of 13C atoms contributing
to each ionic abundance within the ion cluster of a given molecule was
divided by the total abundance of the cluster. The standard curves were
within 5% of each value of theoretical curves, and correlation
coefficients of the regression lines were higher than 0.999 (Beylot et
al., 1986
). The isotopic enrichments of maize root samples were then determined by the equation y = mx + b, where y represents Equation 1, m is
the slope of the standard curve, and b is the y
intercept. The distribution of 13C within Asp was
found to be statistically identical to that in malate, reflecting the
rapidity of transaminase and malate dehydrogenase action in vivo.
Determination of Relative C Fluxes
The absolute enrichment of each C in Ala, Glu, Asp, and malate was
determined as follows: First, relative amounts of
13C in each position of these metabolites were
directly determined from the relative peak areas of each
13C-NMR signal (e.g. Ala C1, C2, or C3; see
Roberts and Xia, 1995
). Relative percent 13C
enrichments so obtained were then multiplied by the total isotopic enrichment determined from GC-MS spectra to give the
absolute-enrichment 13C at each C position. C in
metabolites not derived from [1-13C]Glc has a
13C enrichment of 1.1% (natural abundance).
Positional isotopic enrichment of Glc-6-P was not determined, only its
total enrichment. These measurements do not depend on percentage of
recovery of metabolites through various procedures described above,
because recovery is not discriminatory between different
isotopomers.
To determine the sensitivity of NMR for determination of
natural-abundance 13C enrichment, Ala was
isolated from control maize root tips (fed only natural-abundance Glc
under normoxic or hypoxic conditions). 13C
abundance was determined using the ratio of peak heights from 13C-NMR spectra of each individual C of Ala and
TABA (internal standard). The ratio of total amounts of Ala and TABA
was measured from GC-MS spectra. Measurement of the
13C enrichment for each individual C of Ala was
determined to be 1.021 ± 0.103% 13C
(mean ± sd, n = 27, from nine
separate samples). Relative NMR peak heights for each individual C of
natural-abundance Ala were shown to be equal at 32 ± 3.4, 36 ± 1.7, and 32 ± 2.6%, respectively (mean ± sd), in root-tip extracts.
From these data on relative and absolute 13C
enrichments, relative C fluxes through specific pathways were
determined using the following assumptions: (a) Metabolic and isotopic
steady state has been reached. This assumption was validated by
measurements of 13C enrichment in metabolites
(data not shown). (b) Exchange of mitochondrial, cytosolic, and
vacuolar metabolites is rapid relative to metabolic fluxes. Studies of
malate metabolism support this assumption (see Chang and Roberts, 1989
,
1991
; Kalt et al., 1990
). (c) There is insignificant channeling of
metabolites down specific pathways, i.e. the isotopic composition of
enzyme substrates is the same as the bulk isotopic composition of
metabolites. There is little information available with which to judge
the validity of this assumption. Studies such as those presented here
may lead to insights on the direct transfer of metabolites between
enzymes (see Voet and Voet, 1995
). (d) The pathways of synthesis for
the metabolites studied here are the only significant metabolic
reactions occurring in vivo. This assumption is justified by the fact
that pathways such as gluconeogenesis and the glyoxylate cycle are not
significant in excised maize root tips.
Under these conditions, the observed enrichment of the product
C is equal to the percent contribution
V1 from precursor A and the
percent contribution V2 from precursor
B:
|
(Scheme 1)
|
where
|
(2)
|
and V3 may represent the sum of more
than one outgoing reaction (e.g. consumption of pyruvate for oxidation
and fermentation reactions).
If there is a difference between the positional isotopic
enrichments in molecules A and B, the
contribution of A and B to C can be
deduced using the expression:
|
(3)
|
where Ce is the observed isotopic
enrichment of a specific C atom within molecule C, and
Ae and Be are
the observed isotopic enrichments of the precursor atoms in molecules
A and B, respectively, that are converted to the
C atom having enrichment Ce. This analysis can be applied to each atom in the precursor and the product. The
sensitivity with which V1 and
V2 can be measured increases as the
difference between Ae and
Be increases.
During hypoxia Ala levels increase, so we cannot assume steady
state. Therefore, a correction for the dilution of newly synthesized label incorporated into the Ala pool was applied. The correction determines the actual isotopic enrichment of the Ala synthesized between sequential time points i and f,
Aa, by the following equation:
|
(4)
|
where Af and
Ai are the 13C
isotopic enrichments of Ala from the newest time point and the previous
time point, respectively. This correction represents the extreme case
in which Ala synthesized during the designated time interval is simply
added to the preexisting and inert pool of Ala. In contrast, the
steady-state model assumes that there is no inert pool of Ala. These
two models represent the two extreme possibilities; the actual relative
fluxes under nonsteady-state conditions lie somewhere in between.
 |
RESULTS |
ME Activity Is Negligible Relative to PK in Respiring Maize Root
Tips
We determined fluxes through different pathways of pyruvate
synthesis in [1-13C]Glc-fed root tips from the
isotopic labeling of Ala. High transaminase activity in vivo relative
to other enzymatic activities results in equivalent labeling of
pyruvate and Ala (Dieuaide-Noubhani et al., 1995
). The relative
distribution of 13C label within Ala depends on
the pathway used for pyruvate synthesis, as shown in Table
I (see also Fig. 1). The predicted
13C enrichments shown in Table I were determined
from the 13C enrichments of the precursors
Glc-6-P and malate, measured as described in ``Materials and Methods''. Ala synthesized from Glc-6-P by the classic glycolytic pathway via PK is labeled at C3 (Voet and Voet, 1995
). In contrast, Ala
synthesized from malate via ME is labeled at all three Cs (Fig. 1,
reactions 1, 2, and 3); C2 and C3 of malate are similarly labeled as a
result of randomization by fumarase activity (Osmond and Holtum, 1981
),
and C1 is labeled after multiple turns of the Krebs cycle (Chance et
al., 1983
). Ala synthesis from [1-13C]Glc that
cycles through the pentose phosphate pathway (Fig. 1) will not change
the labeling pattern of Ala, but dilutes the label incorporated into C3
Ala relative to Glc-6-P enrichment (Dieuaide-Noubhani et al., 1995
).
View this table:
[in this window]
[in a new window]
|
Table I.
Predicted and observed 13C enrichments
of Ala, reflecting dual pathways of synthesis in oxygenated
[1-13C]Glc-labeled maize root tips
Predicted enrichments of Ala synthesized exclusively via either
glycolysis or ME activity were deduced from 13C enrichments
of Glc-6-P and malate, respectively. Values are means ± sd (n = 4).
|
|
By comparing the 13C enrichment at C1, C2, and C3
Ala derived from the alternative precursors Glc-6-P and malate via the
indicated pathway (Table I), it is clear that C2 Ala is most suited for measuring relative activities of ME and PK. First,
13C enrichment at C2 Ala differs by more than
15-fold when comparing synthesis via PK or ME, and so provides a more
sensitive indicator than enrichment at either C1 or C3, which differ by
less than 7- and 2-fold, respectively (Table I). Second,
13C enrichment at C2 Ala is not sensitive to
operation of the pentose phosphate pathway, unlike labeling at C3 Ala
(Dieuaide-Noubhani et al., 1995
). We therefore used the
13C enrichment of C2 Ala and its precursors to
measure the fractional contribution of PK and ME to pyruvate synthesis,
as described in ``Materials and Methods'' (Scheme 1 and Eqs. 2 and
3). In oxygenated maize root tips, 13C enrichment
at C2 Ala was found to be 1.59 ± 0.37% (Table I), whereas the
precursors C2 and C5 of Glc-6-P were both 1.1.%
13C (natural abundance) (Dieuaide-Noubhani et
al., 1995
), and the precursor C2 of malate was 17.47 ± 1.2%.
Solving Equations 2 and 3 with these values indicates that only 3 ± 1.1% of the pyruvate in vivo was synthesized via ME, the balance
being synthesized by PK.
ME Is Activated during Early Hypoxia
We previously described an increase in 13C
incorporation into C2 Ala in hypoxic root tips, and presented
qualitative evidence that this increase was caused by the action of ME
(Roberts et al., 1992
). Our goal here was to quantify ME activity after
the onset of hypoxia to test the validity of our previous conclusions. Ala levels increase during hypoxia (Roberts et al., 1992
; Xia and
Roberts, 1994
), and so the approach to measurement of ME activity taken
in the previous section was adapted to the nonsteady-state condition,
as described in ``Materials and Methods''. We observed a greater than
2-fold increase in the incorporation of 13C into
C2 Ala in root tips within 20 min of the onset of hypoxia (Fig.
2A).

View larger version (20K):
[in this window]
[in a new window]
| Figure 2.
A, 13C incorporation into C2 Ala in
maize root tips during hypoxia. Data points are mean values ± se (n = 4). B, Relative contribution of
ME and PK to in vivo pyruvate synthesis determined using a steady-state
( ) or a nonsteady-state ( ) model (see ``Materials and Methods''). Data points are mean values ± ranges, the latter
calculated using extreme values from sd values from
13C enrichments.
|
|
Flux analysis using Equations 2, 3, and 4 indicates that the activity
of ME relative to PK increases approximately 6-fold during the first
few minutes of hypoxia (Fig. 2B). The two data sets shown in Figure 2B
show that analysis using either the steady-state model or the
nonsteady-state model yields very similar results, indicating that the
changes in levels of Ala do not cause significant changes in isotopic
enrichment relative to the steady-state condition before the onset of
hypoxia. The activation of ME early in hypoxia followed the rapid
depletion of intracellular Asp (Fig. 3B),
and roughly paralleled the changes in intracellular malate (Fig. 3A).

View larger version (19K):
[in this window]
[in a new window]
| Figure 3.
Tissue contents of malate (A) and Asp (B) in maize
root tips during hypoxia. Values are means ± sd and
were determined by enzymatic analysis of root-tip extracts (see
``Materials and Methods'') (n = 4).
|
|
Anaplerotic Malate Synthesis via PEPC in Respiring Root Tips
The 13C isotopic distribution in malate and
Glu was used to estimate the contribution of the anaplerotic C flux to
malate via PEPC. Malate is enriched differently depending on whether it
is synthesized anaplerotically via PEPC or via the Krebs cycle, as shown in Table II. If malate is
synthesized via PEPC, its precursor is PEP (Fig. 1, reaction 4); if it
is synthesized via the Krebs cycle, it is derived from
KG (Fig. 1,
reaction 5). The labeling of PEP was determined as described in Table
II, whereas the labeling pattern in Glu reflects that in
KG
(Dieuaide-Noubhani et al., 1995
). We found that the
13C enrichment of malate lies between predicted
values for each pathway (Table II), indicating that both are active
sources of malate in vivo.
View this table:
[in this window]
[in a new window]
|
Table II.
Predicted and observed 13C
enrichments of malate, reflecting dual pathways of synthesis in
oxygenated [1-13C]Glc-labeled maize root tips
Predicted enrichments of malate synthesized exclusively via the TCA
cycle or PEPC were deduced from 13C enrichments of Glu and
PEP, respectively. 13C of PEP was determined as described
by Dieuaide-Noubhani et al. (1995) . The enrichment of carboxyl groups
of malate synthesized exclusively from PEP via PEPC was deduced from
enrichment of 13CO2 that would be generated
from respired Glc-6-P. Values are means ± sd
(n = 4).
|
|
Quantitation of the relative C fluxes to malate via each pathway was
determined individually from C1, C2, C3, and C4 malate using both
predicted and actual enrichment values for each C (Table II). All four
Cs of malate were used because they are similarly sensitive to changes
in relative flux between the two pathways, in contrast to the
measurements of ME/PK, described above. By solving Equations 2 and 3 using the values given in Table II, we determined that PEPC contributed
62 ± 5.2% (mean ± se) of the malate
synthesized in respiring root tips.
The large PEPC flux, comparable to that through the Krebs cycle, can
also be inferred from the pattern of 13C
enrichment observed in Glu, as previously demonstrated by
Dieuaide-Noubhani et al. (1995)
. In the absence of anaplerotic
activity, steady-state enrichment of Glu C is a simple reflection of
labeling of pyruvate, as described by Chance et al. (1983)
(Table
III). The observation of lower
enrichments in C1, C2, and C3 than in C4 of Glu (Table III) reflects
the action of PEPC, which dilutes the 13C label
in these first three C's (Dieuaide-Noubhani et al., 1995
). We found
that the predicted 13C enrichment in Glu,
calculated from observed enrichments of the precursors malate and
pyruvate/Ala, matches the observed enrichment in Glu (Table III). This
observation supports the validity of the model of Dieuaide-Noubhani et
al. (1995)
.
View this table:
[in this window]
[in a new window]
|
Table III.
Predicted and observed 13C enrichments
of Glu, reflecting dual pathways of synthesis in oxygenated
[1-13C]Glc-labeled maize root tips
Predicted enrichments of Glu synthesized via the TCA cycle operating
either exclusively in catabolic mode (PEPC flux = 0) or
exclusively in anabolic mode (PEPC flux = PDH flux) were deduced from 13C enrichments of Ala alone (from the steady-state
result described by Chance et al., 1983 ) or malate plus Ala (ignoring
continued cycling of C beyond -KG/Glu), respectively. Values are
means ± sd (n = 4).
|
|
PEPC Exceeds ME Activity by More Than 10-Fold in Respiring Root
Tips
To relate the two paired flux measurements described above (ME/PK
and PEPC/Krebs
KG
malate), it
is first necessary to consider how individual C fluxes around the
complete Krebs cycle will differ depending on the particular
biosynthetic output. When biosynthesis is absent, the net flux of C
through each Krebs cycle step will be equal, and likewise if the Krebs
cycle's biosynthetic output is exclusively from oxaloacetate to Asp.
In contrast, if the biosynthetic output of the Krebs cycle is
exclusively from
KG to Glu, then the flux from malate to
KG will
be proportionately higher than the flux from
KG to malate (Fig. 1).
Similarly, the rate of entry of pyruvate into the Krebs cycle (equal to
the combined action of PK and ME) will increase relative to the flux
from
KG to malate when the biosynthetic flux to Glu increases (Fig.
1). From these considerations, we determined the limits of the relative
fluxes via PK, ME, and PEPC in respiring root tips (Table
IV). It is clear that the anaplerotic
flux via PEPC is comparable in magnitude to the rate of pyruvate entry into the Krebs cycle. Furthermore, the flux to malate via PEPC is at
least 1 order of magnitude greater than the flux from malate via
ME.
View this table:
[in this window]
[in a new window]
|
Table IV.
Summary of relative enzyme fluxes in oxygenated
maize root tips
Relative enzyme activities were either measured or deduced under
specific physiological restrictions based on the results shown in
Tables I-III. Errors represent se.
|
|
 |
DISCUSSION |
The Contribution of ME to Respiratory Activity
Using the combined analytical methods of GC-MS and NMR, we have
measured in vivo activities of the enzymes ME and PK. We found that
during respiration, ME activity accounts for approximately 3% of the
pyruvate synthesized in respiring maize root tips (Table IV). These
results are consistent with the analysis of Dieuaide-Noubhani et al.
(1995)
, and support their model relating labeling patterns of Glu and
malate. However, our results are contrary to results obtained in
isolated mitochondria. For example, Day and Hanson (1977)
determined
that in isolated mitochondria from maize, ME accounted for 42% of the
pyruvate used by the Krebs cycle.
It has been widely accepted that mitochondrial ME may serve to
compensate for limited pyruvate transport across the mitochondrial membrane (Day and Hanson, 1977
; Brailsford et al., 1986
; Hill et al.,
1994
) by providing the Krebs cycle with pyruvate under high-energy
demands (for review, see Wiskich, 1980
; ap Rees, 1990
; Douce and
Neuburger, 1990
; Lambers, 1990
). However, our work here indicates that
this does not appear to be the case in excised maize root tips.
Although we cannot at this point exclude the possibility that plant
tissues other than maize root tips might rely more on ME to fuel
respiration, we suggest the possibility that the greater activity of ME
observed in isolated maize mitochondria reflects nothing more than its
apparent activation by low pH, as discussed in the next section.
Regulation of ME Activity in Vivo and in Vitro
We observed that in respiring root tips the flux to malate via
PEPC is a least 1 order of magnitude greater than the rate of malate
consumption by ME (Table IV). This indicates that ME activity is not
limited by the supply of malate in vivo. Furthermore, we demonstrate
that ME is activated approximately 6-fold during the first few minutes
of hypoxia (Fig. 2B), which is consistent with our earlier hypothesis
(Roberts et al., 1992
). The activation of ME in hypoxia, which we
measured relative to flux through PK (Table IV), represents an increase
in absolute activity, not an inhibition of PK, given that glycolytic
flux increases during hypoxia (Roberts et al., 1984
).
These observations indicate that ME activity is somehow suppressed in
oxygenated, respiring root tips, and we speculate that this inhibition
is primarily caused by the high cytoplasmic pH (approximately 7.6) in
oxygenated root tips (Roberts et al., 1992
). There is significant
circumstantial evidence that the behavior of ME in root tips under high
O2 and hypoxia is regulated by pH. First, ME
activity in vitro is strongly affected by pH, increasing when the
reaction pH decreases between 7.6 and 6.5 (Davies and Patil, 1974
;
Wedding and Black, 1983
). Second, cytoplasmic pH decreases rapidly from
approximately 7.5 to 6.9 during the first few minutes of hypoxia
(Roberts et al., 1984
, 1992
). Third, ME activity in isolated
mitochondria is activated at low pH (Neuburger and Douce, 1980
; Wedding
and Whatley, 1984
), indicating that cytoplasmic acidosis can be sensed
by mitochondrial ME. Fourth, studies with isolated mitochondria show
that significant pyruvate synthesis via ME was obtained with buffers of
pH 6.8 to 7.2 (Day and Hanson, 1977
; Brailsford et al., 1986
; Hill et
al., 1994
).
These observations provide an explanation for our result that very
little pyruvate synthesis occurs via ME in respiring root tips (Table
IV). Although ME is activated by cytoplasmic acidosis, in vivo this
condition is met only under severe hypoxia, in which respiration
becomes negligible. Hence, it would seem that only under unusual
conditions will both high respiratory demand and cytoplasmic acidosis
exist together in plant cells, and allow ME to fulfill its widely
considered role in plant respiration (for review, see Wiskich, 1980
; ap
Rees, 1990
; Lambers, 1990
; Douce and Neuburger, 1990
).
This narrow view clearly awaits experimental studies of ME activities
in other plant tissues and under different physiological conditions. In
addition to regulation by pH, ME activity may also be influenced by
levels of malate (Davies and Patil, 1974
; Wedding and Black, 1983
;
Davies, 1984
), given that the concentration of cytoplasmic malate in
excised maize root tips is approximately 3.5 mm (Chang and
Roberts, 1991
). Consistent with this possibility is the coincident
activation of ME (Fig. 2B) and the increase in malate during the first
few minutes of hypoxia (Fig. 3A). This increase in malate is at least
in part attributable to its synthesis from Asp, which is depleted (Fig.
3B) (Roberts et al., 1992
).
The decrease in ME activity after approximately 20 min of hypoxia (Fig.
2B) may be partially caused by a slight increase in cytoplasmic pH
after the initial large acidification (Roberts et al., 1992
; Roberts
and Xia, 1996
). Indeed, we have suggested that the action of ME early
in hypoxia may serve to offset cytoplasmic acidification, because this
reaction consumes protons (Davies and Patil, 1974
; Davies, 1980
;
Roberts et al., 1992
). Ultimately, however, ME activity in hypoxic root
tips is limited by cytoplasmic malate, because both intracellular Asp
and malate become depleted (Fig. 3). The residual intracellular malate
found after 1 h or more of hypoxia is predominantly located in the
vacuole (Roberts, 1993
), and is therefore essentially unavailable for
decarboxylation by ME.
The Relationship of PEPC to the Krebs Cycle in Maize Root Tips
The flux through PEPC is comparable in magnitude to the rate of
glycolysis (which we measured at the level of PK) (Table IV) and the
rate of malate synthesis via the Krebs cycle (Table IV). In contrast,
very little malate synthesized by PEPC is converted to pyruvate via ME
(Table IV). We therefore conclude that the principal role of PEPC in
oxygenated maize root tips is anaplerotic, and therefore sustains
biosynthesis rather than respiration.
What is the contribution of the Krebs cycle in biosynthesis associated
with PEPC activity? If the Krebs cycle is drained via oxaloacetate,
PEPC activity requires support from neither PK nor any part of the
Krebs cycle. In contrast, if PEPC activity sustains synthesis of Glu,
there is a requirement for stoichiometric participation of PK and the
Krebs cycle (from oxaloacetate to
KG) (see Fig. 1). Hence, the
nature of the biosynthetic output resulting from anaplerotic action of
PEPC determines the relative activities of PEPC, PK, and different
parts of the Krebs cycle. This interdependence is evident in Table IV,
in which we describe the activity of PEPC with respect to the flux from
KG to malate. Given this ratio of activities, we show that the
accompanying flux through PK will vary from 0.67 to 1.8 times the PEPC
flux (Table IV), depending on whether Asp or Glu is the principal
product.
Although the flux measurements in the present study do not allow
distinction between these possibilities, consideration of previous work
on inorganic C metabolism is useful. First, it has long been known that
the respiratory quotient in oxygenated root tips is close to 1 (Beevers, 1961
). A large flux from Glc to Asp will give less net
CO2 evolution relative to
O2 consumption, whereas inorganic C fixed by PEPC
to sustain synthesis of Glu is accompanied by decarboxylation, and so
in this case O2 consumption (associated with
recycling of pyridine nucleotides) approximates
CO2 release. This analysis indicates that in
maize root tips the flux to Asp is much smaller than that to Glu.
Second, comparison of measurements of PEPC activity, obtained by
following the fate of 14C- and
13C-labeled bicarbonate (Chang and Roberts, 1992
)
with measurements of respiration (Roberts et al., 1984
), suggest that
net CO2 production is severalfold higher than
PEPC activity, an inference similar to that drawn by Dieuaide-Noubhani
et al. (1995)
. As in the first case, these data appear to preclude
biosynthesis of Asp as the major output of the Krebs cycle, because
under the relative flux conditions shown in Table IV, line 3, CO2 evolution from pyruvate oxidation (via PK)
would be considerably offset by
HCO3
fixation attributable to
PEPC activity. In contrast, biosynthesis of Glu under the relative flux
conditions shown in Table IV, line 4, requires
CO2 evolution to be more than 3-fold higher than
PEPC activity, a result in greater accordance with the separate
measurements just noted. Hence, these considerations both indicate that
Glu is a much more important biosynthetic product than Asp in maize root tips and, as a corollary to this conclusion, that the net flux of
C through the Krebs cycle is faster from malate to
KG than from
KG to malate. Furthermore, they point to the potential value of
measurements of CO2 evolution, simultaneous with
isotope analysis of metabolites as performed in this study, to an
understanding of these important metabolic fluxes in plants.
 |
FOOTNOTES |
1
This work was supported by National Science
Foundation (NSF) grant no. IBN 9310850. S.E. was supported by a NSF
Minority Graduate Research Fellowship in Plant Biochemistry.
*
Corresponding author; e-mail jkmr{at}ucrac1.ucr.edu; fax
1-909-787-3590.
Received August 27, 1997;
accepted November 14, 1997.
 |
ABBREVIATIONS |
Abbreviations:
KG,
-ketoglutarate.
ME, malic enzyme.
m/e, mass-to-charge ratio.
PEPC, PEP carboxylase.
PK, pyruvate kinase.
TABA, 2-aminobutylrate.
 |
ACKNOWLEDGMENT |
We thank Dr. Philippe Raymond for helpful discussions during the
preparation of the manuscript.
 |
LITERATURE CITED |
ap Rees T
(1990)
Carbon metabolism in mitochondria.
In
DT Dennis,
DH Turpin,
eds, Plant Physiology Biochemistry and Molecular Biology.
Longman Scientific & Technical, Harlow, UK, pp 106-123
Beevers H (1961) Respiratory Metabolism in Plants. Row, Peterson,
New York
Bergmeyer HU (1974) Methods of Enzymatic Analysis, Ed 2. Academic
Press, New York
Beylot M,
Beaufrere B,
Normand S,
Riou JP,
Cohen R,
Mornex R
(1986)
Determination of human ketone body kinetics using stable-isotope labelled tracers.
Diabetologia
29:
90-96
[Medline]
Brailsford MA,
Thompson AG,
Kaderbhai N,
Beechey RB
(1986)
Pyruvate metabolism in castor-bean mitochondria.
Biochem J
239:
355-361
[Medline]
Bryce JH,
ap Rees T
(1985)
Rapid decarboxylation of the products of dark fixation of CO2 in roots of Pisum and Plantago.
Phytochemistry
24:
1635-1638
[CrossRef]
Chance EM,
Seeholzer SH,
Kobayashi K,
Williamson JR
(1983)
Mathematical analysis of isotope labeling in the citric acid cycle with applications to 13C NMR studies in perfused rat hearts.
J Biol Chem
258:
13785-13794
[Abstract/Free Full Text]
Chang K,
Roberts JKM
(1991)
Cytoplasmic malate levels in maize root tips during K+ ion uptake determined by 13C-NMR spectroscopy.
Biochim Biophys Acta
1092:
29-34
[Medline]
Chang K,
Roberts JKM
(1992)
Quantification of rates of transport, metabolic fluxes, and cytoplasmic levels of inorganic carbon in maize root tips during K+ ion uptake.
Plant Physiol
99:
291-297
[Abstract/Free Full Text]
Chang KJ,
Roberts JKM
(1989)
Observation of cytoplasmic and vacuolar malate in maize root tips by 13C-NMR spectroscopy.
Plant Physiol
89:
197-203
[Abstract/Free Full Text]
Davies DD (1980) Anaerobic metabolism and the production of
organic acids. In DD Davies, ed, The Biochemistry of Plants,
Vol 2. Academic Press, New York, pp 581-607
Davies DD
(1984)
The co-ordination and integration of metabolite pathways.
In
JM Palmer,
eds, The Physiology and Biochemistry of Plant Respiration.
Cambridge University Press, Cambridge, UK, pp 159-170
Davies DD
(1986)
The fine control of cytosolic pH.
Physiol Plant
67:
702-706
[CrossRef]
Davies DD,
Patil KD
(1974)
Regulation of "malic" enzyme of Solanum tuberosum by metabolites.
Biochem J
137:
45-53
[Medline]
Day DA,
Hanson JB
(1977)
Pyruvate and malate transport and oxidation in corn mitochondria.
Plant Physiol
59:
630-635
[Abstract/Free Full Text]
Dieuaide-Noubhani M,
Raffard G,
Canioni P,
Pradet A,
Raymond P
(1995)
Quantification of compartmented metabolic fluxes in maize root tips using isotope distribution from 13C- or 14C- labeled glucose.
J Biol Chem
270:
13147-13159
[Abstract/Free Full Text]
Douce R,
Neuburger M
(1990)
Metabolite exchange between the mitochondrion and the cytosol.
In
DT Dennis,
DH Turpin,
eds, Plant Physiology Biochemistry and Molecular Biology.
Longman Scientific & Technical, Harlow, UK, pp 173-190
Fowler MW
(1974)
Role of the malic enzyme reaction in plant roots, utilization of [2,3-14C]malate, [4-14C]malate, and [1-14C]pyruvate by pea root apices and measurement of enzyme activity.
Biochim Biophys Acta
372:
245-254
Hill AS,
Bryce JH,
Leaver CJ
(1994)
Pyruvate metabolism in mitochondria from cucumber cotyledons during early seedling development.
J Exp Bot
45:
1489-1491
[Abstract/Free Full Text]
Kalt W,
Osmond CB,
Siedow JN
(1990)
Malate metabolism in the dark after 13CO2 fixation in the Crassulacean plant Kalanchoe tubiflora.
Plant Physiol
94:
826-832
[Abstract/Free Full Text]
Katz J,
Lee W-NP,
Wals PA,
Bergner EA
(1989)
Studies of glycogen synthesis and the Krebs cycle by mass isotopomer analysis with [U-13C]glucose in rats.
J Biol Chem
264:
12994-13001
[Abstract/Free Full Text]
Künnecke B
(1995)
Application of 13C NMR spectroscopy to metabolic studies on animals.
In
N Beckmann,
eds, Carbon-13 NMR Spectroscopy of Biological Systems.
Academic Press, San Diego, CA, pp 159-267
Lambers H
(1990)
Oxidation of mitochondrial NADH and the synthesis of ATP.
In
DT Dennis,
DH Turpin,
eds, Plant Physiology Biochemistry and Molecular Biology.
Longman Scientific & Technical, Harlow, UK, pp 124-143
Lance C,
Rustin P
(1984)
The central role of malate in plant metabolism.
Physiol Veg
22:
625-641
MacKenzie SL,
Hogge LR
(1977)
Gas chromatography-mass spectrometry of the N(O)-hepta-fluorobutyryl isobutyl esters of the protein amino acids using electron impact ionization.
J Chromatogr
132:
485-493
[CrossRef][Medline]
MacKenzie SL,
Tenaschuk D
(1979)
Quantitative formation of N(O,S)-heptafluorobutyryl isobutyl amino acids for gas chromatographic analysis.
J Chromatogr
171:
195-208
[CrossRef]
Neuburger M,
Douce R
(1980)
Effect of bicarbonate and oxaloacetate on malate oxidation by spinach leaf mitochondria.
Biochim Biophys Acta
589:
176-189
[Medline]
Osmond CB,
Holtum JAM
(1981)
Crassulacean acid metabolism.
Biochem Plants
8:
283-328
Roberts JKM
(1993)
Interaction between cytoplasmic fermentation reactions and transport of protons between cytoplasm and vacuoles in maize root tips studied in vivo by NMR spectroscopy.
In
PW Hochachka,
PL Lutz,
T Sick,
M Rosenthal,
G van den Thillart,
eds, Surviving Hypoxia: Mechanisms of Control and Adaptation.
CRC Press, Boca Raton, FL, pp 187-200
Roberts JKM,
Hooks MA,
Miaullis AP,
Edwards S,
Webster C
(1992)
Contribution of malate and amino acid metabolism to cytoplasmic pH regulation in hypoxic maize root tips studied using nuclear magnetic resonance spectroscopy.
Plant Physiol
98:
480-487
[Abstract/Free Full Text]
Roberts JKM,
Wemmer D,
Jardetzky O
(1984)
Measurement of mitochondrial ATPase activity in maize root tips by saturation transfer 31P nuclear magnetic resonance.
Plant Physiol
74:
632-639
[Abstract/Free Full Text]
Roberts JKM,
Xia JH
(1995)
High-resolution NMR methods for study of higher plants.
In
DW Galbraith,
HJ Bohnert,
DP Bourque,
eds, Methods in Plant Cell Biology, Vol 49, Part A.
Academic Press, San Diego, CA, pp 245-258
Roberts JKM, Xia JH (1996) NMR contributions to understanding of
plant responses to low oxygen stress. In Y Shachar-Hill, PE
Pfeffer, eds, Nuclear Magnetic Resonance in Plant Biology, Vol 16. American Society of Plant Physiologists, Rockville, MD, pp 155-180
Voet D,
Voet J
(1995)
Biochemistry, Ed 2.
John Wiley & Sons, New York, NY
Wedding RT
(1989)
Malic enzymes of higher plants.
Plant Physiol
90:
367-371
[Abstract/Free Full Text]
Wedding RT,
Black K
(1983)
Physical and kinetic properties and regulation of the NAD malic enzyme purified from leaves of Crassula argentea.
Plant Physiol
72:
1021-1028
[Abstract/Free Full Text]
Wedding RT,
Whatley FR
(1984)
Malate oxidation by Arum spadix mitochondria: participation and characterization of NAD-malic enzyme.
New Phytol
96:
505-517
Wiskich JT (1980) Control of the kreb cycle. In DD
Davies, ed, The Biochemistry of Plants, Vol 2. Academic Press, New
York, pp 243-278
Xia JH,
Roberts JKM
(1994)
Improved cytoplasmic pH regulation, increased lactate efflux, and reduced cytoplasmic lactate levels are biochemical traits expressed in root tips of whole maize seedlings acclimated to a low-oxygen environment.
Plant Physiol
105:
651-657
[Abstract]