Plant Physiol. (1998) 117: 9-17
Aluminum-Resistant Arabidopsis Mutants That Exhibit Altered
Patterns of Aluminum Accumulation and Organic Acid Release from
Roots1
Paul B. Larsen,
Jörg Degenhardt,
Chin-Yin Tai2,
Laura M. Stenzler,
Stephen H. Howell, and
Leon V. Kochian*
United States Plant, Soil, and Nutrition Laboratory, United States
Department of Agriculture-Agriculture Research Station, Tower Road,
Cornell University, Ithaca, New York 14853 (P.B.L., J.D., L.V.K.); and Boyce Thompson Institute, Tower Road, Cornell University, Ithaca, New
York 14853 (C.-Y.T., L.M.S., S.H.H.)
 |
ABSTRACT |
Al-resistant
(alr) mutants of Arabidopsis thaliana
were isolated and characterized to gain a better understanding of the
genetic and physiological mechanisms of Al resistance.
alr mutants were identified on the basis of enhanced
root growth in the presence of levels of Al that strongly inhibited
root growth in wild-type seedlings. Genetic analysis of the
alr mutants showed that Al resistance was semidominant,
and chromosome mapping of the mutants with microsatellite and random
amplified polymorphic DNA markers indicated that the mutants mapped to
two sites in the Arabidopsis genome: one locus on chromosome 1 (alr-108, alr-128,
alr-131, and alr-139) and another on
chromosome 4 (alr-104). Al accumulation in roots of
mutant seedlings was studied by staining with the fluorescent
Al-indicator dye morin and quantified via inductively coupled argon
plasma mass spectrometry. It was found that the alr
mutants accumulated lower levels of Al in the root tips compared with
wild type. The possibility that the mutants released Al-chelating organic acids was examined. The mutants that mapped together on chromosome 1 released greater amounts of citrate or malate (as well as
pyruvate) compared with wild type, suggesting that Al exclusion from
roots of these alr mutants results from enhanced organic
acid exudation. Roots of alr-104, on the other hand, did not exhibit increased release of malate or citrate, but did alkalinize the rhizosphere to a greater extent than wild-type roots. A detailed examination of Al resistance in this mutant is described in an accompanying paper (J. Degenhardt, P.B. Larsen, S.H. Howell, L.V. Kochian [1998] Plant Physiol 117: 19-27).
 |
INTRODUCTION |
Al toxicity is a global problem that limits crop productivity on
acidic soils. Al is the most abundant metal in the earth's crust, and
in acidic soils (pH < 5.5) the phytotoxic species
Al3+ is solubilized to levels that inhibit root
growth and crop yield (Kochian, 1995
). Large areas of the world contain
acidic soils (>30% of the arable land), so Al toxicity is a very
important worldwide agricultural problem (Von Uexkull and Mutert,
1995
). Despite the agronomic importance of this problem, little is
known about fundamental mechanisms of Al toxicity and resistance. It has been well documented that many plant species exhibit significant genetic variability in their ability to resist Al toxicity (Delhaize and Ryan, 1995
; Kochian, 1995
, and refs. therein). Although it is clear
that certain plant genotypes have evolved mechanisms that confer Al
resistance, the cellular and molecular basis for Al resistance is still
poorly understood.
There are two strategies that plants can use to deal with Al toxicity:
exclusion from the root apex or development of the ability to tolerate
Al once it enters the plant symplasm (Delhaize and Ryan, 1995
; Kochian,
1995
). Because of the complex interactions between Al and the plant, it
is very likely that there are a number of different mechanisms that
plants use to confer Al resistance. This is supported by genetic
studies of Al resistance, which have shown it to be a dominant,
multigenic trait controlled by one or a few major genes and several
minor genes (Lafever and Campbell, 1978
; Aniol, 1990
; Carver and Ownby,
1995
).
Recent experimental evidence supports an Al-resistance mechanism that
results in the exclusion of Al from the root apex via the release of
Al-binding ligands such as organic acids and/or phosphate. When these
ligands are released into the rhizosphere, they can effectively chelate
Al3+ and prevent its entry into the root. In
several species, including snapbean, maize, and wheat, increased Al
resistance is correlated with Al-dependent organic acid (citrate or
malate) release (Miyasaka et al., 1991
; Delhaize et al., 1993b
; Basu et
al., 1994
; Pellet et al., 1995
). In near-isogenic lines of wheat,
increased Al resistance is dependent on Al-inducible release of malate
into the rhizosphere (Delhaize et al., 1993a
, 1993b
). Further
examination has shown that in a large number of wheat genotypes, Al
resistance is strongly correlated with the level of Al-induced malate
that is released from root tips (Ryan et al., 1995b
).
A similar mechanism has also been reported in maize; an Al-resistant
cultivar was shown to release citrate in response to Al (Pellet et al.,
1995
). More recently, it was shown that constitutive phosphate release
might operate in conjunction with Al-induced organic release to confer
a greater degree of Al resistance in certain wheat genotypes (Pellet et
al., 1996
). Another mechanism of Al exclusion that is frequently
proposed is a root-mediated elevation in the pH of the rhizosphere
adjacent to the root apex (Kochian, 1995
). Because the solubility of
Al3+ is pH dependent, increases in rhizosphere pH
would reduce the activity of Al3+ in the
rhizosphere, thus decreasing Al entry into the root. However, no direct
evidence for this Al-exclusion mechanism has been found to date.
The primary effect of Al toxicity is a rapid inhibition of root growth,
which appears to result from complex interactions between Al and the
root apex (Ryan et al., 1993
). Because this response is rapid (e.g.
significant inhibition within 1 h in wheat), it is likely that
cell elongation, not cell division, is initially inhibited. However, in
the long term, Al-dependent root-growth inhibition is probably
dependent on blockage of both cell division and elongation (Kochian,
1995
). The molecular and biochemical basis of Al toxicity is not well
understood, but it is likely that a number of processes that are
associated with both the root apoplast and the symplast are targeted by
Al. In Arabidopsis thaliana, mutations affecting at least
eight unique loci confer increased Al sensitivity, indicating that Al
sensitivity is a complex trait in plants (Larsen et al., 1996
).
We were interested in determining the molecular and physiological basis
of Al resistance in higher plants, so we identified and characterized
Arabidopsis mutants with altered responses to Al. We previously
identified and characterized a number of Al-sensitive Arabidopsis
mutants, and through analysis of these mutants, are attempting to
identify genes encoding targets of Al toxicity (Larsen et al., 1996
,
1997
). In the present study, we have conducted research aimed at
identifying loci that are responsible for Al resistance via screening
for Arabidopsis mutants with increased resistance to Al. By isolation
and analysis of such mutants, we hope to identify and characterize
genes responsible for Al resistance and to gain a better understanding
of the genetic and physiological mechanisms resulting in resistance.
 |
MATERIALS AND METHODS |
Isolation of Mutants
Mutants were generated in the Columbia (Col-0) ecotype of
Arabidopsis thaliana by treating seeds with EMS.
Al-resistant (alr) M2 seedlings were
identified by quantifying root growth through gelled-nutrient medium
equilibrated with levels of AlCl3 toxic to
wild-type seedlings (Larsen et al., 1996
).
Screening was carried out in 100- × 25-mm Petri dishes containing
85 mL of nutrient medium (pH 4.2) plus 0.125% gellan gum (Gell-Gro,
ICN) (for composition of nutrient medium, see Larsen et al., 1996
). Al
was introduced into the gel medium by equilibration for 2 d with a
soak solution consisting of a modified nutrient solution, pH 4.2, and
1.5 mm AlCl3 (Larsen et al., 1996
).
Mutagenized seeds were sterilized and cold stratified (4°C) for
2 d in the dark to synchronize germination. Two-hundred-fifty M2 generation seeds suspended in 0.15% agarose
were planted around the periphery of each Petri dish. After incubation
for 7 d in a growth chamber (20°C with a day/night cycle of 16/8
h), putative Al-resistant mutant seedlings were identified based on
enhanced root growth in the Al-containing environment, and then rescued onto plant nutrient medium without Al and with Suc added (Lincoln et
al., 1990
). After 2 weeks, putative mutants were transferred to soil
and grown in a light room at 20°C, 40% RH, and a light intensity of
50 µE m
2 s
1. Putative
alr mutants were selfed, and M3
progeny were rescreened using the same screening method. Each mutant
was backcrossed four times into the Columbia background and the
resulting BC4 generation was used for subsequent
genetic and physiological analyses.
Genetic Analysis
Analysis of inheritance was performed by crossing each
alr mutant (male parent) to wild-type (Col-0) plants (female
parent) bearing the glabrous-1 mutation (used as a crossing
marker).
The chromosome location of each alr mutation was mapped
using microsatellite markers (Bell and Ecker, 1994
). To generate
mapping populations, alr mutants (Col-0 ecotype) were
crossed with wild type (Wassilewskija, Ws-0 ecotype). Homozygous
wild-type (not resistant to Al) F2 progeny were
identified on gelled-nutrient medium equilibrated with 1.5 mm AlCl3. Progeny were confirmed as
being homozygous by rescreening F3 families using
the same method. Map distances were analyzed using the Mapmaker II
program (Lander et al., 1987
).
To identify more closely linked markers on chromosome 1, RAPD analysis
was performed by comparing pools of homozygous resistant and homozygous
wild-type F2 plants generated from a mapping
cross between alr-128 and Ws-0 (Reitter et al., 1992).
Root-Growth Measurements in Solution Culture
Arabidopsis seedlings were grown in solution culture supported on
a 250-µm mesh polypropylene screen in 100- × 15-mm Petri dishes
containing 40 mL of nutrient solution (Larsen et al., 1996
). After
4 d of growth, one-half of the seedlings were removed for root
measurement. At this time, the solution was replaced with nutrient
solution containing varying concentrations of
AlCl3 or LaCl3. For growth
in LaCl3-containing solution,
KH2PO4 was omitted to
prevent precipitation of La. The seedlings were grown for an additional
2 d, after which time the roots of the remaining seedlings were
measured.
Determination of Al Accumulation in Roots
To determine if any of the Al-resistant mutants were excluding Al
from the root tip, two different approaches were used. First, roots
were stained with morin (2
,3
,4
,5,7-pentahydroxyflavone), a
fluorescent histochemical indicator for Al. Roots of seedlings grown in
solution culture were exposed for 1 h to 25 µm
AlCl3 in nutrient medium. The roots were washed
in Mes buffer, pH 5.5, for 10 min, stained with morin, and visualized
using the methods described by Larsen et al. (1996)
. A second approach
involved the direct quantification of Al in root tissue using ICP-MS.
Arabidopsis seedlings were grown hydroponically on 2 × 2 cm squares of
250-µm polypropylene mesh supported by 1.5-cm polycarbonate rods
(1.25 cm in diameter) (Small Parts, Inc., Miami, FL). One-hundred seeds were sown on each screen and then placed in a 100- × 25-mm Petri dish containing 85 mL of nutrient medium.
After 4 d of growth, the growth solution was replaced with a new
medium containing 25 µm AlCl3, and
seedlings were incubated for up to 3 h. Seedlings were then rinsed
in nutrient medium for 5 min. For root tissue in which cell wall-bound
Al was desorbed, samples were washed in 0.5 mm citrate, pH
4.2, for 30 min at 4°C (Zhang and Taylor, 1990
). Root tips were
harvested by cutting the terminal portion with a razor blade against
the polycarbonate support rod. Collected roots were dried in an oven at
90°C overnight, and dry weights were determined using a
microgram balance (model UMT2, Mettler, Greifensee, Switzerland).
Dried tissue samples were ashed in 20 µL of hot, concentrated nitric
acid. Samples were resuspended in 10 mL of 1.0% nitric acid and
analyzed using an inductively coupled argon plasma mass spectrometer
(model 5000, Perkin-Elmer/Sciex). Samples were compared with
AlCl3 standards.
All plasticware used for growth and collection of samples was soaked in
20% HCl before use to minimize Al contamination.
Visualization of Callose in Roots
Five-day-old seedlings were exposed to various concentrations of
AlCl3 for 24 h, after which they were
transferred to fixative containing 10% formaldehyde, 5% glacial
acetic acid, and 45% ethanol, and vacuum infiltrated for 4 h.
Fixed seedlings were stained with 0.1% aniline blue (pH 9.0, 0.1 m K3PO4).
Callose production was visualized under the same conditions as
described for morin staining.
Measurement of Root Organic Acid Content and
Exudation
One-hundred seeds of either the wild type or specific mutant lines
were sown on 250-µm polypropylene mesh supported in a six-well tissue
culture plate (Falcon) containing 18 mL of liquid nutrient medium per
well. After 5 d of growth, seedlings were rinsed with 100 µm CaCl2, pH 4.2, and transferred
to 18 mL of 100 µm CaCl2, pH 4.2, containing either 0 or 2.7 µm
AlCl3. Calculations using the Geochem-PC program
(Parker et al., 1987
) indicated that a concentration of 2.7 µm AlCl3 in 100 µm
CaCl2, pH 4.2, yielded the same
Al3+ activity as 25 µm
AlCl3 in the liquid nutrient medium, pH 4.2. After 24 h of growth in the solutions with and without Al, 15-mL samples of each root-bathing solution were collected and passed through
an Ag cartridge (OnGuard, Dionex, Sunnyvale, CA) to remove free
Cl
for subsequent HPLC analysis.
Solutions were frozen, lyophilized, and resuspended in 600 µL of
deionized water. Samples were analyzed on an ion chromatography system
(model DX-300, Dionex) fitted with a 4-mm AG-11 guard column and a 4-mm
AG-11 ion-exchange analytical column. Samples were separated using an
eluent gradient of NaOH in 17% high-purity methanol, and anions were
detected by measurement of electrical conductivity. Identification of
organic acids in the exudates was achieved by comparison of retention
times with those of organic acid standards. Quantification was based on
standard curves generated from peak integration of standards.
Roots used for measurement of internal organic acid concentrations were
grown in the absence of Al as previously described. Roots from 100 5-d-old seedlings were rinsed in deionized water, harvested, weighed,
and ground in 1 mL of 60% ethanol. Cellular debris were pelleted, the
supernatant collected, and the pellet resuspended in 95% ethanol. The
debris were repelleted and the supernatant was collected and combined
with the previous supernatant. The samples were then dried under vacuum
and resuspended in 600 µL of deionized water. Concentrations of
organic acids in roots were measured as previously described for
measurement of organic acids in root exudates.
 |
RESULTS |
Isolation of Mutants with Increased Al Resistance
alr mutants were identified by screening
M2 populations of EMS-mutagenized Arabidopsis for
seedlings exhibiting improved root growth in medium containing a
phytotoxic level of Al. Screening involved the use of gelled-nutrient
medium that was equilibrated with a level of
AlCl3 (1.5 mm) that inhibited root
growth in wild-type seedlings by 80%. AlCl3 was
introduced into the gel medium by soaking because we found that Al
toxicity was variable when Al-containing medium was autoclaved with the
gellan gum (Larsen et al., 1996
).
Approximately 2500 M2 seedlings were
screened from each of 40 mutagenized pools, resulting in the isolation
of 57 putative mutants from approximately 1 × 105 seedlings. Rescreening of
M3 seedlings confirmed that 6 mutants from
different pools were Al resistant (Table
I). An "in-gel" AlCl3 dose-response curve for the alr
mutants demonstrated increased Al resistance at concentrations from
0.25 to 1.5 mm AlCl3 (data not
shown). Root growth in the wild type was inhibited in gel medium
equilibrated with 0.75 mm or higher concentrations of
AlCl3. In contrast, root growth in
alr-128 was inhibited only when grown in gelled-nutrient
medium equilibrated with AlCl3 concentrations
1.25 mm. It should be noted that root growth in the
absence of Al was similar for wild type and all of the alr
mutants.
Genetic Analysis of alr Mutants
To determine the mode of inheritance of Al resistance,
F2 progeny from a cross of each alr
mutant (male) with wild type (gl-1 female) were analyzed on
gelled-nutrient medium equilibrated with 1.5 mm
AlCl3. The segregation of Al resistance in each
of the crosses was consistent with the expectation that Al resistance is a semidominant trait (data not shown). The major class of
F2 progeny in each cross was intermediate in
resistance between the two parents.
Because Al resistance was semidominant, it was not possible to sort the
alr mutants unambiguously by complementation analysis. To
determine whether the alr mutants represented unique genetic loci, the mutations were mapped on the Arabidopsis genome (Table I).
The Ws-0 ecotype was chosen as a mapping partner because it was shown
previously that roots of Ws-0 seedlings had Al sensitivity similar to
that of Col-0 (Larsen et al., 1996
). Homozygous wild-type (non-Al-resistant) F2 progeny were used to
construct a mapping population. The genotypes of the
F2 progeny were confirmed by the analysis of
F3 families. alr-104 mapped near the
cleaved amplified polymorphic sequence marker B9-1.8 on chromosome 4 (Table I) (Konieczny and Ausubel, 1993
). Four other alr
mutants (alr-108, alr-128, alr-131,
and alr-139) mapped on chromosome 1 near the microsatellite
marker nga280 (Table I). Mapping analysis was not carried out for
alr-142 because it has a weak phenotype and is difficult to
follow in crosses.
RAPD mapping was performed to identify an anonymous marker that was
more closely linked to alr-128 than nga280. Pools of DNA from homozygous Al-resistant and wild-type F2
plants generated from the cross described above were compared by RAPD
analysis. A polymorphic band derived from primer OPW-10 appeared in the resistant pools but not in the wild-type pools and was determined to
represent a site tightly linked to the alr-128 locus.
Inheritance of the OPW-10 polymorphism was examined for each of the
alr mutants that mapped near alr-128 (Table I).
The results indicate that these alr mutants map closely
together on chromosome 1 and either represent a cluster of genes
affecting Al resistance or are alleles of the same gene.
Growth of alr Mutants in Al-Containing Solution
Culture
Dose responses were analyzed for seedlings grown hydroponically in
liquid nutrient medium rather than on gels because Al interacts with
the gel matrix, dramatically lowering its phytotoxicity and presumably
the concentration of free Al3+ (Larsen et al.,
1996
). To relate the resistance of the alr mutants to
Al3+ concentration, it was necessary to examine
root growth in hydroponic solution supplemented with physiologically
relevant concentrations of AlCl3. For the studies
of Al effects on root growth and root Al accumulation in the
alr mutants, alr-128 was chosen to represent the
four mutants that map to the same locus on chromosome 1 because it
exhibited the strongest phenotype of the four mutants. It was examined
in comparison with wild type and alr-104, which was the only
mutant to map to chromosome 4. Seedlings of Col-0 wild type, alr-104, and alr-128 were germinated and grown
for 4 d in nutrient solution in the absence of added
AlCl3, after which the root length of one-half of
the seedlings was measured. The remainder of the seedlings were grown
for an additional 2 d in nutrient solution containing varying
concentrations of AlCl3 (0-50 µm).
The relative growth increment (percentage increase in root length
during 2 d of Al exposure) was determined for each mutant and for
the wild-type seedlings (Fig. 1).

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| Figure 1.
Growth of Arabidopsis roots in hydroponic solution
culture containing Al. Al-dependent root growth inhibition was compared for wild type (wt), alr-104, and alr-128.
Seedlings were grown for 4 d in nutrient solution with no added
AlCl3, pH 4.2, and then transferred to nutrient solution
containing varying concentrations of AlCl3 and grown for an
additional 2 d. Relative root growth increment in the presence of
Al was expressed as (RL d 6 RL d 4)/(RL d 4) × 100, where
RL = root length. Error bars represent the se
(n = 50).
|
|
Root growth of wild-type seedlings was inhibited at concentrations of
AlCl3 as low as 10 µm, and declined
sharply at 20 µm. In contrast, at concentrations between
10 and 40 µm AlCl3, root growth in
both alr-104 and alr-128 decreased gradually,
with maximal differences in Al resistance between wild type and the
alr mutants occurring within this concentration range. In
nutrient solution containing 50 µm
AlCl3, root growth of both wild type and the alr mutants was completely inhibited. A concentration of 50 µm AlCl3 in our nutrient solution
represents an Al3+ activity of 3.9 µm, as determined by the Geochem-PC program (Parker et
al., 1987
).
Growth of alr Mutants in La-Containing Solution
Culture
To determine whether the metal resistance in the
alr mutants was specific for Al, the mutants were grown
in nutrient solution containing another phytotoxic trivalent cation,
La3+, which has rhizotoxic effects similar to those of Al.
However, it has been previously shown that Al-resistant wheat genotypes were not La resistant (Kinraide et al., 1992
; Ryan et al., 1995a
). The
sensitivity of root growth to La in wild type, alr-104,
and alr-128 was assessed by growing seedlings in the
same nutrient solution used for determining Al resistance, except that
the medium containing LaCl3 was prepared without
KH2PO4 to prevent the precipitation of La.
During a 2-d exposure to 15 µm LaCl3, roots
of wild type (Col-0) were inhibited by 60 ± 4.3%. Similar
La-dependent inhibition of root growth was observed for the
alr mutants, with roots of alr-104
inhibited by 55 ± 6% and those of alr-128
inhibited by 58 ± 4.7%.
Callose Accumulation
Callose deposition is an indicator of Al-induced stress because it
accumulates in root tips after exposure to toxic levels of Al
(Wissemeir et al., 1987
; Schreiner et al., 1994
; Zhang et al., 1994
).
Callose accumulation was examined in the alr mutants to
determine if increased Al resistance resulted in reduced callose accumulation after exposure to Al. Four-day-old seedlings were transferred for 24 h to nutrient solution containing levels of Al
that were more strongly toxic to wild type compared with the alr mutants, after which roots were fixed and stained with
aniline blue, pH 9.0. Root tips were examined for callose fluorescence using epifluorescence microscopy (Fig.
2A). Untreated wild-type root tips
exhibited little background fluorescence, whereas wild-type root tips
exposed to Al fluoresced intensely, indicating callose accumulation.
Compared with wild type, callose accumulation in alr-128 in
the presence of Al was reduced dramatically to levels slightly greater
than that seen for the untreated controls. Callose accumulation was
only modestly reduced in roots of alr-104.

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| Figure 2.
Accumulation of Al and callose in roots after
exposure to AlCl3. A, Patterns of Al-dependent callose
accumulation were examined for roots of wild type (wt),
alr-104, and alr-128. Roots of 4-d-old seedlings were exposed to nutrient solution containing 75 µm AlCl3 for 24 h, except for the first
panel, in which no Al was added ( Al). Seedlings were then fixed,
stained with 0.1% aniline blue, pH 9.0, and observed using
epifluorescence microscopy. The top row represents bright-field images
of the treated roots, and the bottom row are fluorescence images
indicating callose accumulation. B, Patterns of Al accumulation by
roots of wild type, alr-104, and alr-128
were observed using the Al-indicator dye morin. Five-day-old seedlings
grown in nutrient solution without Al were exposed to nutrient solution
containing 25 µm AlCl3 for 1 h, except
for the first panel, in which no Al was added ( Al). Roots were then
stained with 100 µm morin, a stain that fluoresces when
complexed with Al.
|
|
Patterns of Al Accumulation
Al-exclusion mechanisms, including the release of Al-chelating
organic acids, reduce Al accumulation in root tips of Al-resistant cultivars. Therefore, we investigated the possibility that increased Al
resistance in the alr mutants was associated with a decrease in root apical Al accumulation after short-term exposure to Al.
Roots of intact wild-type, alr-104, and alr-128
seedlings were exposed to a nutrient solution containing 25 µm AlCl3 for either 0 or 3 h,
after which time roots were rinsed for 5 min in nutrient solution
without Al. Root tips, representing the terminal 1 to 2 cm of the
roots, were analyzed for Al content using ICP-MS. As shown in Table
II, analysis of 0-h samples revealed a
minimal amount of background Al. After 3 h of Al exposure, wild
type accumulated 48% more Al than alr-104 and 61% more
than alr-128.
Al bound to the root cell wall was desorbed with an ice-cold 0.5 mm citrate solution following the methods of Zhang and
Taylor (1990)
to determine if the differences in root Al accumulation between wild type and the alr mutants was attributable to
symplastic or apoplastic Al. It should be noted that it is likely that
this desorption regime does not remove all of the cell wall Al (see Rengel, 1996
), but primarily removes Al in the free space and loosely
bound to the cell wall. Under these conditions, after desorption
the Al left in the root would be either tightly bound to the cell wall
or sequestered in the symplasm. Citrate desorption reduced the amount
of Al that accumulated in wild-type roots, but had no effect on Al
concentrations in roots of alr-104 and alr-128
(Table II), suggesting that Al accumulated in alr roots represents Al that cannot easily be desorbed from the root cell wall.
Therefore, the fraction of Al desorbed from wild-type roots may
represent a free pool of apoplastic Al that was not present in the
alr roots.
Wild-type seedlings and the alr mutants were further
examined for their capability to exclude Al by using the Al-indicator dye morin. The use of morin, which fluoresces when complexed with Al,
allows for better spatial resolution of Al accumulation in the root
apex, the primary site of Al toxicity. Seedlings were exposed to 25 µm AlCl3 for 1 h, washed, and
then stained with morin. As shown in Figure 2B, morin staining revealed
that there were significant differences between wild type and the
alr mutants in terms of Al accumulation within the root
apex. Roots not exposed to Al exhibited a very slight fluorescence. In
contrast, intense morin fluorescence was observed in wild-type root
tips exposed to 25 µm AlCl3. Morin
fluorescence in Al-treated root tips of both alr-104 and
alr-128 was reduced compared with wild type, with
alr-128 exhibiting the lowest levels of fluorescence after the 1-h exposure to Al. This was especially true right at the root apex
of alr-128, where staining intensity approximated that seen
in untreated wild-type roots.
Organic Acid Release
In wheat and maize, increased Al resistance is associated with
Al-induced exudation of Al-chelating organic acids into the rhizosphere
(Delhaize et al., 1993a
, 1993b
; Pellet et al., 1995
). To determine if a
similar mechanism operates in Arabidopsis, the alr mutants
were examined for altered patterns of organic acid release in
comparison with wild-type seedlings.
Seedlings of wild type and each alr mutant were grown in
sterile culture for 5 d in nutrient solution and subsequently
transferred to a sterile solution consisting of 100 µm
CaCl2, pH 4.2, containing either 0 or 2.7 µm AlCl3, and grown for an
additional 24 h. Subsequently, the root-bathing solution was
collected and analyzed for organic acids. These root-exudate
experiments were carried out in simple salt
(CaCl2) solutions to eliminate interference from
the high levels of inorganic anions in the nutrient solution (i.e.
NO3
,
SO42
, and
PO43
) during HPLC analysis. It
was determined with the Geochem-PC program that the addition of 2.7 µm AlCl3 to the low-salt solution (100 µm CaCl2) would yield the same
Al3+ activity as 25 µm
AlCl3 in the full nutrient solution.
When roots of wild-type seedlings were incubated in the root-bathing
solution without added Al, the profile of organic acid release during
the 24-h time period was complex (Fig.
3). Citrate was the predominant organic
acid released by wild-type roots, along with smaller amounts of
pyruvate, succinate, and malate. Exposure to 2.7 µm
Al3+, which inhibited root growth in wild-type
seedlings but not in the alr mutants, did not significantly
change the profile or magnitude of organic acid release by wild-type
roots.

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| Figure 3.
Organic acid exudation by roots of wild-type (wt)
seedlings and alr mutants in the presence or absence of
Al. One-hundred seedlings of wild type (Col-0), alr-104,
alr-108, alr-128, and alr-131 were grown for 5 d in nutrient solution and
then transferred to a solution consisting of 100 µm
CaCl2, pH 4.2, containing either 0 or 2.7 µm
Al3+ for 24 h. Root exudates were collected, free
Cl was removed, and samples were analyzed using an
ion-chromatography system. Each panel represents the total picomoles of
organic acid released by 100 roots during the 24-h period in the
absence ( Al) or presence (+Al) of added Al. Error bars represent the
se (n = 6).
|
|
The profiles of released organic acids indicate that the group of
mutants mapping on chromosome 1 (alr-108,
alr-128, and alr-131) are phenotypically similar
but not identical (Fig. 3). These mutants constitutively exhibited an
increased rate of malate and/or citrate exudation. alr-108,
alr-128, and alr-139 each exhibited stimulated malate release, particularly alr-128, which had a 2-fold
increase in malate exudation compared with wild type. In the absence of Al, each mutant exhibited a slight to moderate increase in citrate release. This was most evident for alr-131, a mutant that
did not exhibit enhanced malate exudation. Increased rates of citrate exudation were not sustained when the mutants were exposed to Al. Each
of the four chromosome 1 mutants exhibited a 2- to 3-fold stimulation
in pyruvate exudation (which does not effectively chelate Al).
alr-104, the lone mutation on chromosome 4, did not exhibit
an enhanced citrate or malate exudation compared with wild type (Fig.
3). Thus, the mechanism of Al resistance in alr-104 does not
appear to involve stimulated organic acid exudation.
Internal Organic Acid Concentrations
To determine if the increased release of organic acids by roots of
the alr mutants that map to chromosome 1 was driven
primarily by increased organic acid synthesis, organic acid
concentrations were quantified in wild-type and alr-128
roots using HPLC. For comparison purposes, we also quantified organic
acid levels in roots of alr-104, even though it did not
exhibit enhanced organic acid release. As shown in Table
III, there were only very modest changes in root organic acid concentrations between wild type and the
two alr mutants. Roots of wild-type and alr-128
seedlings were similar in pyruvate concentration, whereas roots of
alr-104 contained no detectable pyruvate. Concentrations of
malate were similar in roots of wild type and alr-104, with
alr-128 roots exhibiting a modest (<10%) increase in
malate levels. Finally, root citrate levels were similar in wild type
and alr-128, whereas alr-104 exhibited a
significantly greater concentration of citrate in the roots (an
approximately 30% increase). It does not appear that these changes in
root organic acid content could account for the increased organic acid
release in roots of alr-128 or the other alr
mutants that map to the same locus on chromosome 1.
 |
DISCUSSION |
Al Resistance in Arabidopsis
Al resistance in other plant species is usually a dominant trait
and in some cases is considered to be a gain-of-function character
(Lafever and Campbell, 1978
; Delhaize et al., 1993a
; Carver and Ownby,
1995
). Because of this, the recovery of alr mutants from a
standard Arabidopsis EMS-mutagenesis procedure was somewhat unexpected.
Initial screening resulted in the identification of six unique mutants
from a mutagenized pool of approximately 1 × 105 seeds, indicating that Al resistance appears
at a low frequency in mutagenized populations of Arabidopsis. It is not
clear whether the Al resistance in the alr mutants results
from gain-of-function or loss-of-function mutations. Enhanced organic
acid release was found to be correlated with increased Al resistance
and it is possible that mechanisms involved in organic acid synthesis
or transport may be altered in such a way as to increase organic acid
production or transport out of the root. Alternatively, increased Al
resistance could result from a loss-of-function mutation such as a
defect in a repressor, resulting in either ectopic or elevated expression of a gene responsible for Al resistance.
We have identified at least two loci in Arabidopsis that confer Al
resistance, which does not appear to be as genetically complex in
Arabidopsis as Al sensitivity, for which eight different loci have been
found (Larsen et al., 1996
). All eight Al-sensitive loci have not been
mapped yet, but so far we have no evidence that the mutations affecting
Al sensitivity and resistance involve common genes. Certainly, the
Al-sensitive mutations may affect the same mechanisms affected by
alr mutations, but they probably would do so in different
ways. It is likely that some of the Al-sensitive mutations are just as
important in understanding Al resistance as the alr
mutations.
To varying degrees, both alr-104 and alr-128
appear to exclude Al from the root tip. This was shown both by staining
root tips with Al-indicator dyes and by quantifying Al accumulation with ICP-MS. Differences in Al accumulation between wild type and the
alr mutants appeared to be much greater when analyzed by
morin staining than by ICP-MS. This is probably a result of technical
limitations attributable to the difficulty of isolating only root tips
for analysis via ICP-MS. In both wheat and maize, Al exclusion and
organic acid release were specifically localized to the root apex, and
there were no differences in Al accumulation for mature root regions
between Al-resistant and Al-sensitive genotypes (see Rincon and
Gonzales, 1992
). We also found little difference in Al accumulation
between the alr mutants and wild-type seedlings in the
mature root regions based on results from morin staining (data not
shown). The smallest root tip segments we could obtain by harvesting
root tips en masse were about 5 mm in length. Because the root apex in
Arabidopsis is only about 1 mm long, it would be expected that the
differences in Al concentration between root tips of the alr
mutants and wild type as determined by ICP-MS analysis are an
underestimation of the actual differences within the root apex.
In addition to the fact that root growth in alr-104 and
alr-128 is resistant to Al, each accumulated less callose,
which is a good indicator of Al toxicity in roots (Wissemeir et al.,
1987
; Schreiner et al., 1994
; Zhang et al., 1994
). After Al exposure, callose accumulation in the roots of both alr mutants was
reduced compared with wild type. Unlike Al-sensitive Arabidopsis
mutants, in which no correlation was found between Al sensitivity and
Al-dependent callose accumulation (Larsen et al., 1996
), a reduction in
callose accumulation in the alr mutants appears to be a good
marker of increased Al resistance.
Organic Acid Exudation in Relation to Al Resistance
alr-108, alr-128, alr-131, and
alr-139 were found to be closely linked to the
microsatellite marker nga280 on chromosome 1. Further mapping with RAPD
markers demonstrated that each mapped within a few centimorgans of a
single RAPD marker, suggesting that they are tightly clustered or
represent alleles of the same gene. Mutants in this group are
phenotypically similar in that they have nearly identical profiles of
organic acid release (except alr-131, which does not exhibit
enhanced rates of malate release but does exhibit a moderate [40%]
increase in citrate release). The differences between
alr-131 and the other mutants may be the result of allelic
variation or may indicate that alr-131 actually represents
another closely linked gene.
Both malate and citrate have high affinities for
Al3+ (Hue et al., 1986
; Delhaize et al., 1993b
).
Recent studies have shown that Al-resistant, near-isogenic lines of
wheat bearing the Alt1 gene exhibit a severalfold
stimulation in the rate of root malate exudation compared with the
Al-sensitive line. The function of Alt1, which is
responsible for differential Al resistance, has not been ascertained.
When Ryan et al. (1995b)
compared a number of different wheat cultivars
exhibiting varying degrees of Al resistance, a good correlation was
found between Al-inducible malate release and Al resistance. A similar
mechanism has been described in maize, in which Al exclusion from the
root tip in Al-tolerant lines is correlated with an Al-inducible
exudation of citrate localized to the root apex (Pellet et al.,
1995
).
Malate (and Cl
) efflux across the plasma
membrane coupled to K+ efflux has been studied
extensively in relation to stomatal closure. Work by several groups has
shown that anion channels are responsible for the observed release of
Cl
and malate during stomatal closing (Linder
and Raschke, 1992
; Hedrich and Becker; 1994; Hedrich et al., 1994
;
Schroeder, 1995
). Similar anion channels have been studied in the
plasma membrane of epidermal cells of Arabidopsis hypocotyls and are
assumed to exist throughout the plant, including the root (Thomine et
al., 1995
). Therefore, it is presumed that organic acid release from root cells is mediated by an outward-rectifying, plasma
membrane-localized anion channel.
Because plant anion channels can be regulated by a number of external
and internal factors (Ebel and Cosio, 1994
; Schroeder, 1995
; Thomine et
al., 1995
; Ward et al., 1995
), it is possible that at least in wheat
and maize, Al may play a role in anion-channel gating (Delhaize et al.,
1993b
; Pellet et al., 1995
, 1996
; Ryan et al., 1995a
, 1995b
). Support
for this possibility comes from the results of a recent study by Ryan
et al. (1997)
, which were based on an electrophysiological
(patch-clamp) analysis of protoplasts isolated from the root apex of
the Al-resistant wheat line used to initially demonstrate Al-inducible
malate release. They presented evidence for an Al-activated anion
channel in the plasma membrane of these protoplasts that could play a
key role in the Al-exclusion response previously studied in intact
roots. The physiological characteristics of organic acid release
observed in the Arabidopsis alr mutants may be somewhat
different than that seen in Al-resistant lines of maize and wheat.
Unlike maize and wheat, the altered pattern of organic acid release
observed, for example, in alr-128 does not appear to be Al
induced, suggesting that the mutation responsible for this phenotype
does not result in a change in the Al-dependent regulation of the
transporter.
However, it is possible that the increased organic acid release of
alr-128 results from a change in the Al-independent gating of an organic acid transporter, thus allowing constitutive increases in
citrate, malate, and pyruvate release. The anion channel involved in
guard-cell closure has been reported to have low ion selectivity, with
the capability to transport a broad range of anions out of the guard
cell (Schmidt and Schroeder, 1994
; Schroeder, 1995
). The low
selectivity of such a transporter involved in anion efflux suggests
that organic acids in roots may be transported via a similar system.
The observed increase in the rate of organic acid exudation by roots of
alr-128 could also represent some change in the
compartmentalization of organic acids. Citrate, malate, and pyruvate
are all organic acid species that accumulate in the cytoplasm after
export of citrate from mitochondria. It is possible that the increased
release of organic acids out of the root may result from an alteration in citrate export from mitochondria. Based on the data shown in Figure
3, which indicate that in alr-128 citrate efflux is
increased slightly, whereas malate efflux is doubled and pyruvate
release is tripled, it can be speculated that a mutation that leads to either enhanced transport of citrate from the mitochondria or reduced
citrate transport into the vacuole results in the progressive increase
in the cytoplasm of derivatives of cytoplasmic citrate. Inherent in
this speculative model is the concept that increased levels of
cytoplasmic organic acids lead to increased transport of these species
out of the cell. Support for this comes from the recent work by de la
Fuente et al. (1997)
, in which transgenic tobacco and papaya seedlings
expressing bacterial citrate synthase resulted in increased citrate
accumulation in the root cytoplasm, enhanced citrate exudation from the
root, and a significant increase in Al resistance.
Apparently, Al resistance in alr-104, a locus that maps to a
different chromosomal location than alr-128, arises from a
different mechanism than enhanced organic acid release. Degenhardt et
al. (1998)
describe a mechanism by which roots of alr-104
exhibit an Al-inducible increase in rhizosphere pH, resulting in a
decrease in the activity of the rhizotoxic Al3+
species in the rhizosphere.
This study represents the first report to our knowledge of Arabidopsis
mutants selected for increased Al resistance in roots. Isolation of
such mutants will allow for further characterization of Al-resistance
mechanisms and may provide an opportunity to identify other
Al-resistance mechanisms that have not been previously described. In
addition, such mutants provide the opportunity to isolate genes
responsible for these mechanisms. This is significant because previous
work to characterize Al resistance mechanisms has been performed in
plants with complex genomes, such as wheat and maize, in which it is
more difficult to isolate the genes involved in Al resistance.
 |
FOOTNOTES |
1
This work was initiated through the support of
the Cornell Biotechnology program and was supported in part by the U.S.
Environmental Protection Agency, Office of Research and Development
(project no. R82-0001-010).
2
Present address: Department of Pediatric
Oncology, Dana-Farber Cancer Institute, 44 Binney Street, Boston, MA
02115.
*
Corresponding author; e-mail lvk1{at}cornell.edu; fax
1-607-255-2459.
Received May 27, 1997;
accepted November 20, 1997.
 |
ABBREVIATIONS |
Abbreviations:
EMS, ethyl methylsulfonate.
ICP-MS, inductively
coupled argon plasma MS.
RAPD, random amplified polymorphic DNA.
 |
ACKNOWLEDGMENTS |
The technical assistance of Jon Shaff, Steve Schaefer, and Calie
Santana is much appreciated, as are the comments and suggestions from
Drs. Rob Last and David Jones.
 |
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