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Plant Physiol. (1998) 117: 989-996
Mutagenesis of the Glucose-1-Phosphate-Binding Site of Potato
Tuber ADP-Glucose Pyrophosphorylase1
Yingbin Fu,
Miguel A. Ballicora, and
Jack Preiss*
Department of Biochemistry, Michigan State University, East
Lansing, Michigan 48824
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ABSTRACT |
Lysine (Lys)-195 in the
homotetrameric ADP-glucose pyrophosphorylase (ADPGlc PPase) from
Escherichia coli was shown previously to be involved in
the binding of the substrate glucose-1-phosphate (Glc-1-P). This
residue is highly conserved in the ADPGlc PPase family. Site-directed
mutagenesis was used to investigate the function of this conserved Lys
residue in the large and small subunits of the heterotetrameric potato
(Solanum tuberosum) tuber enzyme. The apparent affinity
for Glc-1-P of the wild-type enzyme decreased 135- to 550-fold by
changing Lys-198 of the small subunit to arginine, alanine, or glutamic
acid, suggesting that both the charge and the size of this residue
influence Glc-1-P binding. These mutations had little effect on the
kinetic constants for the other substrates (ATP and Mg2+ or
ADP-Glc and inorganic phosphate), activator (3-phosphoglycerate), inhibitor (inorganic phosphate), or on the thermal stability. Mutagenesis of the corresponding Lys (Lys-213) in the large subunit had
no effect on the apparent affinity for Glc-1-P by substitution with
arginine, alanine, or glutamic acid. A double mutant,
SK198RLK213R, was also obtained that had a
100-fold reduction of the apparent affinity for Glc-1-P. The data
indicate that Lys-198 in the small subunit is directly involved in the
binding of Glc-1-P, whereas they appear to exclude a direct role of
Lys-213 in the large subunit in the interaction with this substrate.
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INTRODUCTION |
ADPGlc PPase (EC 2.7.7.27) catalyzes an important regulatory
step in the biosynthesis of starch in plants and of glycogen in
bacteria (Preiss, 1988 , 1991 , 1997 ; Preiss and Sivak, 1996 ). This
enzyme mediates the synthesis of ADPGlc and PPi from Glc-1-P and ATP.
The product, ADPGlc, serves as the activated glucosyl donor in
-1,4-glucan synthesis. ADPGlc PPase from higher plants is
heterotetrameric and encoded by two different genes (Smith-White and
Preiss, 1992 ; Preiss and Sivak, 1996 ), whereas the enzyme from
enterobacteria and cyanobacteria is homotetrameric in structure. The
small subunit of higher-plant ADPGlc PPases is highly conserved, whereas the similarity among different large subunits is lower (Smith-White and Preiss, 1992 ). It has been speculated that the two
plant subunits were originally derived from the same gene. This gene
was duplicated during evolution, and then the two polypeptides diverged
in sequence. Both subunits are required for optimal activity (Iglesias
et al., 1993 ; Ballicora et al., 1995 ).
Studies based on a wide range of sources have shown that ADPGlc PPase
is regulated by effectors derived from the dominant carbon-assimilation
pathway in the organism. The enzyme from higher plants (Preiss, 1988 ,
1991 ), green algae (Sanwal and Preiss, 1967 ; Ball et al., 1991 ), and
cyanobacteria (Iglesias et al., 1991 ) is mainly activated by 3PGA and
inhibited by Pi. ADPGlc PPases from enteric bacteria are activated by
Fru-1,6-bisP and inhibited by AMP (Preiss and Romeo, 1989 ).
The potato (Solanum tuberosum L.) tuber ADPGlc PPase
consists of two different subunits of 51 and 50 kD (Okita et al.,
1990 ). The cDNAs encoding the large and small subunits of the potato tuber ADPGlc PPase have been expressed in Escherichia coli,
and yielded a recombinant heterotetrameric enzyme with properties similar to those of the native enzyme purified from potato tuber (Ballicora et al., 1995 ). It was found that the homotetrameric enzyme
composed of only small subunits exhibited catalytic activity, with
allosteric regulatory properties different from those of the
heterotetrameric enzyme. In contrast, the large subunit by itself has
negligible catalytic activity (Ballicora et al., 1995 ). It was
proposed, therefore, that the major function of the large subunit is to
modulate the sensitivity of the small subunit to allosteric regulation
by Pi and 3PGA, and the major function of the small subunit is
catalysis. However, the precise role of the small and large subunits is
not well understood. Recent studies show that the putative activator
sites in the small subunit are more important in the regulation of the
potato tuber enzyme than the homologous residues in the large subunit
(Ballicora et al., 1998 ).
Chemical modification and site-directed mutagenesis studies have
determined that Lys-195 in ADPGlc PPase from E. coli is
involved in binding of the substrate Glc-1-P (Parsons and Preiss, 1978 ; Hill et al., 1991 ). This residue is highly conserved in the bacterial enzymes as well as in both the small and large subunits of plant ADPGlc
PPases (Preiss and Sivak, 1996 ). However, no studies have been done to
investigate the function of this highly conserved Lys residue in plant
ADPGlc PPases, which consist of two different subunits. The expression
system for potato tuber ADPGlc PPase provides a useful tool with which
to characterize the role of the corresponding Lys residues in the small
subunit (Lys-198) as well as in the large subunit (Lys-213) and to
determine if they retain the same function as in the homotetrameric
E. coli enzyme.
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MATERIALS AND METHODS |
Reagents
ATP, ADPGlc, Glc-1-P, Man-1-P, Gal-1-P, GlcUA-1-P, 3PGA, and PPi
were purchased from Sigma. 32PPi and
[8-14C]ATP were purchased from DuPont-NEN.
[U-14C]Glc-1-P was from ICN.
[ -35S]dATP and the in vitro mutagenesis kit
were from Amersham. Enzymes for DNA manipulation and sequencing were
from New England Biolabs and United States Biochemical, respectively.
Oligonucleotides were synthesized and purified by the Macromolecular
Structure Facility at Michigan State University. All other reagents
were of the highest available commercial grade.
Bacterial Strains and Media
Escherichia coli strain TG1 (F traD36
lacIq [lacZ]M15
proA+B+/supE
[hsdM-mcrB]5[rk mk McrB ]
thi [lac-proAB]) was used for site-directed
mutagenesis. E. coli mutant strain AC70R1-504 (Carlson et
al., 1976 ), which exhibited negligible ADPGlc PPase activity, was used
for expression of the potato tuber ADPGlc PPase gene (Ballicora et al.,
1995 ). Both E. coli strains were grown in Luria-Bertani
medium.
Site-Directed Mutagenesis
For mutagenesis, the gene for the small subunit of potato tuber
ADPGlc PPase was subcloned as an EcoRI fragment from pML 10, a plasmid containing the cDNA gene of the small subunit (Ballicora et
al., 1995 ), into the EcoRI site of M13mp18RF. The gene for the large subunit was subcloned as an XbaI fragment from
pMON17336, a plasmid containing the cDNA gene of the large subunit
(Iglesias et al., 1993 ; Ballicora et al., 1995 ), into the
XbaI site of M13mp19RF. For the small subunit after
mutagenesis, the mutated EcoRI fragment was exchanged with
the unmutated EcoRI fragment in pML 10; for the large
subunit, the mutated XbaI fragment was exchanged with the
unmutated XbaI fragment in pMON17336. Site-directed
mutagenesis experiments were performed according to a previously
described method (Sayers et al., 1988 ) using the in vitro site-directed mutagenesis kit from Amersham. Three heterotetrameric mutant enzymes with a single substitution of Arg, Ala, and Glu at Lys-198 of the small
subunit were designated as
SK198RLwt,
SK198ALwt, and SK198ELwt, respectively.
The mutant enzymes with the substitution of Arg, Ala, and Glu at
Lys-213 of the large subunit were designated as
SwtLK213R,
SwtLK213A, and
SwtLK213E, respectively.
The double-mutant enzyme, in which both Lys-198 of the small subunit
and Lys-213 of the large subunit were replaced with Arg, was designated
as SK198RLK213R. The
oligonucleotides used to create the desired mutations are shown in
Figure 1. Before expression of the mutant enzymes, the entire coding regions of these mutant alleles were sequenced to verify that there were no undesired mutations.

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| Figure 1.
Nucleotide sequence and encoded protein sequence
of the potato tuber ADPGlc PPase gene in the region of Lys-198 in the
small subunit and Lys-213 in the large subunit. The synthetic
oligonucleotides used for site-directed mutagenesis at these positions
are shown beside the corresponding mutants they created. The codons for position 198 in the small subunit and the anticodons for position 213 in the large subunit are underlined.
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Expression and Purification of Mutant and Wild-Type Enzymes
The single mutant enzymes were obtained by co-expressing the
mutated plasmid pML 10 (or pMON17336) with unmutated plasmid pMON17336
(or pML 10) in E. coli mutant strain AC70R1-504. The double-mutant enzyme was obtained by co-expressing the two mutated plasmids in AC70R1-504. Mutant enzyme
SK198RLwt was expressed as
described previously (Ballicora et al., 1995 ). The other mutant and
wild-type enzymes were expressed in the same manner except that the
concentration of isopropyl- -D-thiogalactopyranoside was
increased from 10 µM to 0.5 mM for induction.
An improved procedure over the one in the previous study (Ballicora et
al., 1995 ) was used for the purification of the wild-type
and mutant enzymes. In the
hydrophobic-interaction-chromatography step, the enzyme was loaded onto
the column in the presence of 1.2 M ammonium sulfate
instead of 1.3 M potassium phosphate buffer. After the heat
treatment step, a 50% saturation ammonium-sulfate-precipitation step
was added, after which the pellet was dissolved in a minimal volume of
extraction buffer (100 mM Hepes-NaOH, pH 8.0, 5 mM MgCl2, 1 mM EDTA, and
20% [w/v] Suc) and dialyzed against the same buffer overnight. The
dialyzed enzyme was centrifuged at 20,000g for 15 min at
4°C to remove insoluble material before being loaded onto the DEAE
Fractogel column (EM Separations Technology, Gibbstown, NJ).
Assay of ADPGlc PPase
Assay I
In the pyrophosphorolysis direction, enzyme activity was assayed
according to a previously described method (Morell et al., 1987 ). The
reaction mixture contained 80 mM glycyl-Gly, pH 8.0, 2 mM ADPGlc, 5 mM MgCl2, 3 mM DTT, 2 mM 32PPi
(1000-2000 cpm nmol 1), 3 mM 3PGA,
10 mM NaF, 200 µg mL 1 BSA, and
enzyme in a total volume of 250 µL. The assay conditions for the
mutant enzymes were identical to those for the wild-type enzymes except
that the amounts of MgCl2 and ADPGlc were altered for some mutant enzymes to obtain maximal activity. The amount of
MgCl2 was increased to 10 mM for
SK198ALwt and
SK198ELwt, and to 20 mM for
SK198RLwt and
SK198RLK213R. For the
SK198ELwt and SK198RLwt enzymes, 3 mM ADPGlc was used.
Assay II
In the ADPGlc-synthesis direction, enzyme activity was measured
according to a previously described method (Preiss et al., 1966 ). The
reaction mixture contained 100 mM Hepes-NaOH, pH 8.0, 0.5 mM [U-14C]Glc-1-P (1000-3000 cpm
nmol 1), 1.5 mM ATP, 5 mM MgCl2, 3.0 mM 3PGA, 3 mM DTT, 200 µg mL 1 BSA, 0.3 unit
of inorganic pyrophosphatase, and enzyme in a final volume of 200 µL.
For assay of the
SK198RLwt,
SK198ALwt,
SK198ELwt, and
SK198RLK213R mutant
enzymes, [8-14C]ATP (about 200-500 cpm
nmol 1) instead of
[14C]Glc-1-P was used to monitor the synthesis
of ADPGlc, and the amounts of Glc-1-P and MgCl2
were increased to 30 and 20 mM, respectively, to
obtain maximal activity. For the double-mutant
SK198RLK213R enzyme, the
3PGA concentration was increased to 10 mM in addition to
the changes mentioned above. Because of the high content of Glc-1-P in
the assay mixture, the time for the alkaline phosphatase digestion was
extended to overnight. Control experiments showed that the product,
[14C]ADPGlc, was stable during the overnight
digestion.
Kinetic Studies
For determination of kinetic parameters, the concentration of the
substrate or effectors tested was systematically varied with the other
substrates and effectors fixed at a saturating
concentration, as described for assays I and II. Kinetic data were
plotted as initial velocity versus substrate or effector concentration.
The kinetic constants A0.5,
S0.5, and I0.5,
which correspond to the concentration of activator, substrate, or
inhibitor giving 50% of maximal activation, velocity, or inhibition,
respectively, as well as the interaction coefficient
nH were obtained from a computer program
using a nonlinear, iterative, least-squares fitting to a modified
Michaelis-Menten equation (Canellas and Wedding, 1980 ).
Sugar-Phosphate Specificity
Reactions were performed in the ADPGlc-synthesis direction
(assay II) with different sugar phosphates substituted for Glc-1-P. [8-14C]ATP (about 200-500 cpm
nmol 1) was used to monitor the assay. The
reaction time was extended to 30 min at 37°C. Under the conditions
with Glc-1-P as the substrate, the production of ADPGlc was shown to be
linear for both wild-type and mutant enzyme
SK198ALwt. The time for the
alkaline phosphatase digestion was extended to 48 h. The extent of
the reaction was controlled by varying the amount of enzyme used for
the assay.
Thermal Stability
Enzyme samples were diluted to give the same final protein
concentration (0.3 mg mL 1) in a final volume of
20 µL. Dilution buffer was 50 mM Hepes-NaOH, pH 8.0, 5 mM MgCl2, 1 mM EDTA, 20%
(w/v) Suc, and 1 mg mL 1 BSA. The enzyme samples
were heated for 5 min in a water bath equilibrated at 60°C, then
immediately placed on ice. The enzyme activities were assayed in the
ADPGlc-synthesis direction, as described in "Assay II."
Protein Assay
Protein concentration was measured using the Pierce bicinchoninic
acid reagent (Smith et al., 1985 ) with BSA as the standard.
Protein Electrophoresis and Immunoblotting
SDS-PAGE was performed according to the method of Laemmli (1970)
on 10% polyacrylamide slab gels. After electrophoresis, proteins on
the gel were visualized by staining with Coomassie brilliant blue R-250
or electroblotted onto a nitrocellulose membrane (Burnette, 1981 ).
After electroblotting the nitrocellulose membrane was treated with
affinity-purified rabbit anti-spinach leaf ADPGlc PPase IgG, and the
antigen-antibody complex was visualized by treatment with alkaline
phosphatase-linked goat anti-rabbit IgG followed by staining with
purple alkaline phosphatase-substrate precipitating reagent (Boehringer
Mannheim).
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RESULTS |
Expression and Purification of Mutant Enzymes
Wild-type and mutant enzymes of potato tuber ADPGlc PPase were
identified by immunoblotting with antibody prepared against the spinach
leaf ADPGlc PPase. It has been shown that the small subunit of the
potato tuber enzyme cross-reacts significantly with the spinach leaf
ADPGlc PPase antibody (Okita et al., 1990 ). Under the same
conditions the expression level of all of the mutant enzymes was
similar to that of the wild type based on the results of
immunoblotting. The apparent sizes of these mutant polypeptides were
the same as that of the wild type, having a molecular mass of about 50 kD. Mutant enzyme SK198RLwt
was purified to more than 85% homogeneity, as estimated from about 4 µg of protein electrophoresed on SDS-PAGE. All of the other enzymes
were purified to greater than 95% homogeneity.
Kinetic Characterization of SK198Lwt Mutant
Enzymes
The apparent affinity for Glc-1-P decreased dramatically when
Lys-198 in the small subunit was mutated to either Arg, Ala, or Glu.
The S0.5 values for Glc-1-P of the
SK198RLwt,
SK198ALwt, and
SK198ELwt enzymes were
about 135-, 400-, and 550-fold higher, respectively, than that of the
wild-type enzyme (Table I). Substitution of Lys-198 in the small subunit by Ala and Glu resulted in such large
S0.5 changes that they could not be
accurately determined (Fig. 2A). The
highest Glc-1-P amount used in the assay mixture was 40 mM,
which is about two times higher than the
S0.5 of the Ala mutant and slightly higher
than the S0.5 of the Glu mutant, due to a
solubility problem. The values for nH were
changed from 1.1 for the wild type to 1.3 to 1.8 for the mutant
enzymes. The changes of the Vmax value in the
synthesis direction were 2-fold or less, and in the pyrophosphorolysis
direction, they were less than 4-fold, except for mutant
SK198ELwt. This suggests
that Lys-198 in the small subunit has virtually no role in the
rate-determining step of catalysis. This is consistent with the
observation on the corresponding Lys-195 of the E. coli
ADPGlc PPase (Hill et al., 1991 ). Replacement with Glu not only caused
the largest increase of S0.5 value for
Glc-1-P, but also substantially decreased the catalytic efficiency
relative to the wild-type enzyme.
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Table I.
Comparison of apparent affinity for substrates of
potato tuber wild-type and mutant ADPGlc PPases
Reactions were performed in either the synthesis (assay II) or the
pyrophosphorolysis direction (assay I) as described in ``Materials and Methods''. Data represent the average of two identical
experiments ± the average difference of the duplicates. The
values in parentheses are the Hill interaction coefficients
(nH). One unit of enzyme activity is expressed
as the amount of enzyme required to form 1 mol of ADPGlc per minute at
37°C assayed in either the synthesis or the pyrophosphorolysis
direction.
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| Figure 2.
Glc-1-P dependence for wild-type and mutant
enzymes. A, For wild-type ( ),
SK198RLwt( ),
SK198ALwt( ), and
SK198ELwt( ), 100% activity corresponds to
1.2, 16.6, 33.7, and 39.0 nmol 10 min 1, respectively. B,
For wild-type ( ) and SwtLK213R ( ), 100%
activity corresponds to 1.2 and 1.6 nmol 10 min 1,
respectively. Initial velocities of the enzymes were determined in the
ADPGlc-synthesis direction (assay II), as described in "Materials and
Methods," with the concentration of Glc-1-P being varied. The amounts
of the wild-type, SK198RLwt,
SK198ALwt, SK198ELwt, and SwtLK213R proteins were about 2.5 × 10 3, 70 × 10 3, 80 × 10 3, 2.4 × 10 3, and 5.5 × 10 3 µg, respectively.
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Considering the large effect of the mutation on the
S0.5 of Glc-1-P, it was not surprising to
see that the apparent affinity of ADPGlc was affected (Table I).
Indeed, the S0.5 value of ADPGlc was
increased 2.5- to 10- fold. The kinetic constant for the other substrate, PPi, was increased 3- to 6-fold that for the mutant enzymes
(Table II). However, these changes were
relatively small compared with the change of the
S0.5 value for Glc-1-P. Overall, the
various mutations at position 198 in the small subunit caused little or
no alteration in the apparent affinities for the other substrates (ATP
and Mg2+) and activator (3PGA) (Table II). The
data suggest that the conformations of these ligand-binding sites were
relatively unchanged. The 2- to 7-fold increase of the
I0.5 value for the inhibitor Pi is
relatively small, but the inhibitor site may be in close proximity to
the Glc-1-P-binding site.
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Table II.
Kinetic parameters of the potato tuber wild-type
and mutant ADPGlc PPases
Reactions were performed in either the synthesis (assay II) or the
pyrophosphorolysis direction (assay I) as described in ``Materials and Methods''. Data represent the average of two identical
experiments ± the average difference of the duplicates. The
values in parentheses are the Hill interaction coefficients
(nH). The 3PGA concentration used was 3 mM for the wild-type enzyme and the single-mutant enzymes, and 3PGA at 10 mM was used for the double-mutant enzyme.
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Kinetic Characterization of SwtLK213 Mutant
Enzymes
The apparent affinity for Glc-1-P was not affected when Lys-213 in
the large subunit was replaced with Arg, Ala, or Glu (Table I). As
shown in Figure 2B, there was no difference between the wild-type and
SwtLK213R enzyme in terms
of Glc-1-P dependence. This was also true for both the
SwtLK213A and
SwtLK213E enzymes (data not
shown). This is in sharp contrast to the effect caused by mutations on
Lys-198 in the small subunit (Fig. 2A). Although the apparent affinity
of Glc-1-P was not affected, the apparent affinity for ADP-Glc
decreased 2- to 4-fold (Table I). In general, mutations on Lys-213 of
the large subunit caused small changes (less than 4-fold) to the
kinetic constants for substrates (ATP and Mg2+),
activator (3PGA), and inhibitor (Pi) (Table II).
Kinetic Characterization of SK198RLK213R
Mutant Enzyme
When both Lys-198 in the small subunit and Lys-213 in the large
subunit were replaced with Arg, the S0.5
value for Glc-1-P was about 100-fold higher than that of the wild-type
enzyme (Table I). Considering the 135-fold increase of the
S0.5 value in mutant enzyme
SK198RLwt, the double
mutation did not cause a further decrease in the apparent affinity of
Glc-1-P over the single mutation. In either direction of the assay, the
Vmax of the double-mutant enzyme was
essentially the same as that of the single-mutant enzyme, SK198RLwt.
The double mutation did not cause much alteration in the apparent
affinities for Mg2+ and Pi (Table II); however,
the A0.5 value for 3PGA increased 11-fold
relative to the wild type. This effect seemed to be additive, because
the A0.5 value for both
SK198RLwt and
SwtLK213R increased 3-fold.
The 6-fold increase of the S0.5 value for
PPi was similar to the effect seen in the single-mutant enzyme,
SK198RLwt. The other minor
effects were 4-fold increases of the S0.5
values for both ATP and ADP-Glc (Tables I and II).
Sugar-Phosphate Specificity
Because Lys-198 on the small subunit was implicated in Glc-1-P
binding, it was of interest to determine whether the specificities for
the substrates of the
SK198ALwt mutant enzymes
had been changed. To analyze systematically the contribution of each
specific hydroxyl group in the binding of substrate to the active site
of wild-type and mutant enzymes, a variety of compounds were used in
which sugar moieties differ from Glc stereochemically or by
substitution or elimination of hydroxyl groups at different positions.
In the measurement of the activity of mutant enzyme
SK198ALwt, large amounts of
enzyme had to be used to obtain accurate measurements. The results are
summarized in Table III. When
6-deoxy-Glc-1-P and 6F-Glc-1-P were used to substitute for Glc-1-P, the
activity of the wild-type and
SK198ALwt enzyme decreased
3.1- to 4.5-fold and 17- to 34-fold, respectively. When the other
analogs were used to substitute for Glc-1-P, the activity of the
wild-type and SK198ALwt
enzymes decreased more than 14- and 150-fold, respectively. Thus, both
enzymes showed the largest tolerance toward the elimination or
substitution of the hydroxyl group at C-6 of the Glc molecule, followed
by the changes at C-2, C-3, and C-4. In no case was there a substrate
analog that showed a significantly enhanced reactivity with the mutant
enzyme compared with the wild type. Substitution of a carboxyl group at
C-6 indicates that GlcUA-1-P is not a substrate. The sugar-phosphate
analogs also showed the same pattern of effect for the mutant enzyme
SK198RLwt (data not shown).
The results indicate that the hydroxyl groups at C-2, C-3, and C-4
probably played much more important roles than the C-6 hydroxyl group
in the binding process. Overall, replacement of Lys-198 with either Ala
or Arg did not cause any broadened changes in substrate specificity for
sugar-1-phosphate.
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Table III.
Specificity of sugar phosphates as substrates for
wild-type and mutant enzyme SK198ALwt
Reactions were performed in the synthesis direction as described in
"Materials and Methods," with the presence of sugar phosphates as
indicated. Data represent the average of two duplications ± SD. One unit of enzyme activity is expressed as the amount
of enzyme required to form 1 µmol of ADPGlc per minute at 37°C
assayed in either the synthesis or the pyrophosphorolysis direction.
The lower limit of detection of enzyme activity for the wild type is
0.01 unit mg 1, and for the mutant enzyme
SK198ALwt it is 0.001 unit mg 1
when a sufficient amount of enzyme was used in the assay, as indicated
in the text.
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Thermal Stability of Wild-Type and Mutant Proteins
SK198ALwt, SK198ELwt,
SwtLK213A, and
SK198RLK213R
After heat treatment at 60°C for 5 min, the activity of the
wild-type enzyme remained unchanged, whereas the
SK198ALwt,
SK198ELwt, SwtLK213A, and
SK198RLK213R enzymes
retained 104%, 67%, 94%, and 105% activity, respectively.
Therefore, substitution of Lys-198 with a negatively charged Glu made
the protein more susceptible to heat inactivation. Nevertheless,
neither residue 198 in the small subunit nor residue 213 in the large
subunit was critical for the stability of the native folded state of
the potato tuber enzyme.
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DISCUSSION |
According to the results presented here, we can conclude that
Lys-198 of the small subunit of potato tuber ADPGlc PPase is primarily
involved in Glc-1-P binding. The 135- to 550-fold increases in the
S0.5 value for Glc-1-P when this residue
was replaced by other amino acids explains the high conservation of
this Lys in plant and bacterial ADPGlc PPases. The Lys residue probably
is required for the proper substrate binding to ADPGlc PPase under physiological concentrations of Glc-1-P. Although Lys-198 is critical in interacting with Glc-1-P, it is obviously not essential for thermal
stability. From the modest effect on Vmax
values and the kinetic constants for ATP, Mg2+,
3PGA, and Pi (Tables I and II), Lys-198 is probably neither involved in
the rate-limiting step of the catalytic mechanism nor responsible for
maintaining the native conformation of the enzyme. The
nH of Glc-1-P of the mutant enzymes was
increased to 1.3 to 1.8, compared with 1.1 for the wild type. However,
because both the SK198ALwt
and SK198ELwt mutant
enzymes had high S0.5 values for Glc-1-P,
it was impossible to perform kinetic studies for them under saturated
concentrations of Glc-1-P. Only 50 to 70%
Vmax could be attained based on the
estimation from the Lineweaver-Burk plot. Therefore, the
nH values could be overestimated for these two enzymes. Nevertheless, it has been observed for some enzymes that a
single mutation causing decreased affinity for a ligand results in an
increase in cooperativity (Stebbins and Kantrowitz, 1992 ; First and
Fersht, 1993 ). The phenomenon was explained by the theory of
preexisting cooperativity (First and Fersht, 1993 ).
As the substitution of Lys-198 varied from basic to neutral to acidic
amino acids, the apparent affinities for Glc-1-P decreased. There seems
to be a highly specific requirement for the presence of a Lys residue
in terms of its charge, size, and shape in the active site to allow
optimal binding of substrate. Even the most conservative substitution
of an Arg resulted in a mutant enzyme with 135-fold lower apparent
affinity for Glc-1-P, suggesting that charge alone is insufficient to
account for proper interaction with the substrate. Arg, being a
slightly larger amino acid than Lys, may sterically interfere with
substrate binding.
In contrast to the effects observed for the mutations of Lys-198 of the
small subunit, mutations of Lys-213 of the large subunit had no effect
on the S0.5 of Glc-1-P. When both residues
were replaced by Arg, the effect on the apparent affinity for Glc-1-P was similar to that obtained with the single Arg substitution in the
small subunit, ruling out a direct role of Lys-213 in binding of the
substrate. As indicated in the introduction, the two mutated Lys
residues and their surrounding sequences are highly conserved in the
ADPGlc PPase family. A sequence search of the large subunit of tuber
ADPGlc PPase revealed no consensus sequence other than the region
surrounding Lys-213. Therefore, it is unlikely that Glc-1-P binds to an
alternative site on the large subunit. This seems to be consistent with
the proposed function of this subunit, i.e. modulating the allosteric
regulation of the small subunit by 3PGA and Pi, with no direct role in
catalysis. It is worth noting that this Lys residue is replaced by Gln
in the large subunit of ADPGlc PPase from wheat endosperm (WE7)
(Smith-White and Preiss, 1992 ), which may reflect the relative
unimportance of this residue in the large subunit. In one small-subunit
isozyme of ADPGlc PPase from Vicia faba L. seeds, VfAGPP,
this Lys is replaced by Asn. In the other isozyme, VfAGPC, the Lys
residue is retained.
Both small-subunit genes are expressed in identical temporal and
spatial patterns (Weber et al., 1995 ); however, nothing is known about
the comparative kinetics of the two enzymes. Recent binding experiments
on the potato tuber enzyme by equilibrium dialysis (Y. Fu and J. Preiss, unpublished results) showed that ADPGlc bound to four sites per
tetrameric enzyme. Unfortunately, experiments to determine the number
of binding sites of Glc-1-P were unsuccessful because of the
interference of ADP-Glc produced in the binding procedure; however,
there is a possibility that Glc-1-P may bind to the large subunit, but
with no catalysis after the binding event. In any case, the data
provide further evidence that the main function of the small subunit is
catalysis, as suggested by a previous study (Ballicora et al., 1995 ).
At this stage, further studies are necessary to clarify the precise
role of the large subunit.
The Lys-195 region (FVEKP) of E. coli ADPGlc PPase is not
only conserved in potato tuber ADPGlc PPase (FAEKP), but is also identical to the Man-1-P-binding site of phospho-Man
isomerase-GMP-D-Man pyrophosphorylase (May et al., 1994 ).
Furthermore, this motif or a closely related sequence
(GVEKP, IVEKY, KVIKP, or
FKEKP) is found in many enzymes with the common
characteristic of catalyzing the synthesis of a nucleoside diphosphate
sugar from sugar phosphate and nucleoside triphosphate (Table
IV). Therefore, FVEKP may be part
of a sugar-phosphate-binding motif for this class of sugar nucleotide pyrophosphorylases. Of course, other sequences must dictate the sugar specificity, e.g. for Man-1-P or Glc-1-P.
Various sugar-1-phosphate analogs with sugar moieties differing from
Glc at each hydroxyl group were tested as substrates for wild-type and
mutant enzyme SK198ALwt
(Table III). No broadened specificities for the mutant enzyme were
observed. This probably suggests that Lys-198 only participates in
forming an ionic bond between its positively charged -amino group
and the negatively charged phosphate group of Glc-1-P. Those hydroxyl
groups may interact with the side chains of the other residues in the
active site, i.e. by hydrogen bonding, to anchor the substrate
correctly. Therefore, those analogs tested would have similar effects
on the wild-type as well as the mutant enzymes.
 |
FOOTNOTES |
1
This work was supported in part by Department of
Energy grant no. DE-FG02-93ER20121.
*
Corresponding author; e-mail preiss{at}pilot.msu.edu; fax
1-517-353-9334.
Received February 18, 1998;
accepted April 20, 1998.
 |
ABBREVIATIONS |
Abbreviations:
ADPGlc PPase, ADP-Glc pyrophosphorylase.
6F-Glc-1-P, 6-fluoro-Glc-1-P.
3-PGA, 3-phosphoglycerate.
 |
ACKNOWLEDGMENT |
We thank Dr. Steven Withers (Department of Chemistry, University
of British Columbia, Vancouver, Canada) for kindly providing the
following sugar phosphates: 6-deoxy-Glc-1-P, 6F-Glc-1-P, 2F-Glc-1-P, 3-deoxy-Glc-1-P, and 3F-Glc-1-P.
 |
LITERATURE CITED |
Ball S,
Marianne T,
Dirick L,
Fresnoy M,
Delrue B,
Decq A
(1991)
A Chlamydomonas reinhardtii low-starch mutant is defective for 3-phosphoglycerate activation and orthophosphate inhibition of ADP-glucose pyrophosphorylase.
Planta
185:
17-26
Ballicora MA, Fu Y, Nesbitt NM, Preiss J (1998) ADP-glucose
pyrophosphorylase from potato tuber. Site-directed mutagenesis studies
of the regulatory sites. Plant Physiol (in press)
Ballicora MA,
Laughlin MJ,
Fu Y,
Okita TW,
Barry GF,
Preiss J
(1995)
Adenosine 5 -diphosphate-glucose pyrophosphorylase from potato tuber. Significance of the N terminus of the small subunit for catalytic properties and heat stability.
Plant Physiol
109:
245-251
[Abstract]
Burnette WN
(1981)
"Western blotting": electrophoretic transfer of proteins from sodium dodecyl sulfate-polyacrylamide gels to unmodified nitrocellulose and radiographic detection with antibody and radioiodinated protein A.
Anal Biochem
112:
195-203
[CrossRef][ISI][Medline]
Canellas PF,
Wedding RT
(1980)
Substrate and metal ion interactions in the NAD+ malic enzyme from cauliflower.
Arch Biochem Biophys
199:
259-264
[Medline]
Carlson CA,
Parsons TF,
Preiss J
(1976)
Biosynthesis of bacterial glycogen: activator-induced oligomerization of a mutant Escherichia coli ADP-glucose synthase.
J Biol Chem
251:
7886-7892
[Abstract/Free Full Text]
First EA,
Fersht AR
(1993)
Mutation of lysine 233 to alanine introduces positive cooperativity into tyrosyl-tRNA synthetase.
Biochemistry
32:
13651-13657
[CrossRef][Medline]
Hill MA,
Kaufmann K,
Otero J,
Preiss J
(1991)
Biosynthesis of bacterial glycogen: mutagenesis of a catalytic site residue of ADP-glucose pyrophosphorylase from Escherichia coli.
J Biol Chem
266:
12455-12460
[Abstract/Free Full Text]
Hossain SA,
Tanizawa K,
Kazuta Y,
Fukui T
(1994)
Overproduction and characterization of recombinant UDP-glucose pyrophosphorylase from Escherichia coli K-12.
J Biochem
115:
965-972
[Abstract/Free Full Text]
Iglesias AA,
Barry GF,
Meyer C,
Bloksberg L,
Nakata PA,
Greene T,
Laughlin MJ,
Okita TW,
Kishore GM,
Preiss J
(1993)
Expression of the potato tuber ADP-glucose pyrophosphorylase in Escherichia coli.
J Biol Chem
268:
1081-1086
[Abstract/Free Full Text]
Iglesias AA,
Kakefuda G,
Preiss J
(1991)
Regulatory and structural properties of the cyanobacterial ADP-glucose pyrophosphorylase.
Plant Physiol
97:
1187-1195
[Abstract/Free Full Text]
Jiang XM,
Neal B,
Santiago F,
Lee SJ,
Romana LK,
Reeves PR
(1991)
Structure and sequence of the rfb (O antigen) gene cluster of Salmonella serovar typhimurium (strain LT2).
Mol Microbiol
5:
695-713
[CrossRef][ISI][Medline]
Katsube T,
Kazuta Y,
Mori H,
Nakano K,
Tanizawa K,
Fukui T
(1990)
UDP-glucose pyrophosphorylase from potato tuber: cDNA cloning and sequencing.
J Biochem
108:
321-326
[Abstract/Free Full Text]
Köplin R,
Arnold W,
Hotte B,
Simon R,
Wang G,
Pühler A
(1992)
Genetics of xanthan production in Xanthomonas campestris: the xanA and xanB genes are involved in UDP-glucose and GDP-mannose biosynthesis.
J Bacteriol
174:
191-199
[Abstract/Free Full Text]
Laemmli UK
(1970)
Cleavage of structural proteins during the assembly of the head of bacteriophage T4.
Nature
227:
680-685
[CrossRef][Medline]
Marolda CL,
Valvano MA
(1993)
Identification, expression, and DNA sequence of the GDP-mannose biosynthesis genes encoded by the O7 rfb gene cluster of strain VW187 (Escherichia coli O7:K1).
J Bacteriol
175:
148-158
[Abstract/Free Full Text]
May TB,
Shinabarger D,
Boyd A,
Chakrabarty AM
(1994)
Identification of amino acid residues involved in the activity of phosphomannose isomerase-guanosine 5 -diphospho-D-mannose pyrophosphorylase: a bifunctional enzyme in the alginate biosynthetic pathway of Pseudomonas aeruginosa.
J Biol Chem
269:
4872-4877
[Abstract/Free Full Text]
Morell MK,
Bloom M,
Knowles V,
Preiss J
(1987)
Subunit structure of spinach leaf ADP-glucose pyrophosphorylase.
Plant Physiol
85:
182-187
[Abstract/Free Full Text]
Okita TW,
Nakata PA,
Anderson JM,
Sowokinos J,
Morell M,
Preiss J
(1990)
The subunit structure of potato tuber ADP-glucose pyrophosphorylase.
Plant Physiol
93:
785-790
[Abstract/Free Full Text]
Parsons TF,
Preiss J
(1978)
Biosynthesis of bacterial glycogen: incorporation of pyridoxal phosphate into the allosteric activator site and an ADP-glucose protected pyridoxal phosphate binding site of Escherichia coli B ADP-glucose synthase.
J Biol Chem
253:
6197-6202
[Abstract/Free Full Text]
Preiss J
(1988)
Biosynthesis of starch and its regulation.
In
J Preiss,
eds, The Biochemistry of Plants, Vol 14.
Academic Press, San Diego, CA, pp 181-254
Preiss J
(1991)
Biology and molecular biology of starch synthesis and its regulation.
In
BJ Miflin,
eds, Surveys of Plant Molecular and Cell Biology, Vol 7.
Oxford University Press, Oxford, UK, pp 59-114
Preiss J (1997) Modulation of starch synthesis. In C
Foyer, P Quick, eds, Engineering Improved Carbon and Nitrogen Resource
Use Efficiency in Higher Plants. Taylor and Francis, London, pp 81-104
Preiss J,
Romeo T
(1989)
Physiology, biochemistry and genetics of bacterial glycogen synthesis.
Adv Microb Physiol
30:
183-238
[Medline]
Preiss J,
Shen L,
Greenberg E,
Gentner N
(1966)
Biosynthesis of bacterial glycogen: activation and inhibition of the adenosine diphosphate glucose pyrophosphorylase of Escherichia coli B.
Biochemistry
5:
1833-1845
[CrossRef][Medline]
Preiss J, Sivak M (1996) Starch synthesis in sinks and sources.
In E Zamski, A Schaffer, eds, Photoassimilate Distribution
in Plants and Crops. Marcel Dekker, New York, pp 63-96
Ragheb JA,
Dottin RP
(1987)
Structure and sequence of a UDP glucose pyrophosphorylase gene of Dictyostelium discoideum.
Nucleic Acids Res
15:
3891-3906
[Abstract/Free Full Text]
Sanwal GG,
Preiss J
(1967)
Biosynthesis of starch in Chlorella pyrenoidosa. II. Regulation of ATP:alpha-D-glucose 1-phosphate adenyl transferase (ADP-glucose pyrophosphorylase) by inorganic phosphate and 3-phosphoglycerate.
Arch Biochem Biophys
119:
454-459
[CrossRef][Medline]
Sayers JR,
Schmidt W,
Eckstein F
(1988)
5 -3 Exonucleases in phosphorothioate-based oligonucleotide-directed mutagenesis.
Nucleic Acids Res
16:
791-802
[Abstract/Free Full Text]
Smith PK,
Krohn RI,
Hermanson GT,
Mallia AK,
Garter FH,
Provenzano MD,
Fujimoto EK,
Goeke NM,
Olson BJ,
Kenk DK
(1985)
Measurement of protein using bicinchoninic acid.
Anal Biochem
150:
76-85
[CrossRef][ISI][Medline]
Smith-White B,
Preiss J
(1992)
Comparison of proteins of ADP-glucose pyrophosphorylase from diverse sources.
J Mol Evol
34:
449-464
[CrossRef][ISI][Medline]
Stebbins JW,
Kantrowitz ER
(1992)
Conversion of the noncooperative Bacillus subtilis aspartate transcarbamoylase into a cooperative enzyme by a single amino acid substitution.
Biochemistry
31:
2328-2332
[CrossRef][Medline]
Thorson JS,
Kelly TM,
Liu HW
(1994)
Cloning, sequencing, and overexpression in Escherichia coli of the -D-Glc-1-P cytidylyltransferase gene isolated from Yersinia pseudotuberculosis.
J Bacteriol
176:
1840-1849
[Abstract/Free Full Text]
Varnó D,
Boylan SA,
Okamoto K,
Price CW
(1993)
Bacillus subtilis gtaB encodes UDP-glucose pyrophosphorylase and is controlled by stationary-phase transcription factor sigma B.
J Bacteriol
175:
3964-3971
[Abstract/Free Full Text]
Weber H,
Heim U,
Borisjuk L,
Wobus U
(1995)
Cell-type specific, coordinate expression of two ADPGlc pyrophosphorylase genes in relation to starch biosynthesis during seed development of Vicia faba L.
Planta
195:
352-361
[ISI][Medline]
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