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Plant Physiol. (1998) 118: 1463-1471
Regulation of Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase by
Carbamylation and
2-Carboxyarabinitol 1-Phosphate in Tobacco:
Insights from Studies of Antisense Plants Containing Reduced
Amounts of Rubisco Activase1
Edward T. Hammond,
T. John Andrews, and
Ian E. Woodrow*
School of Botany, The University of Melbourne, Parkville, Victoria
3052, Australia (E.T.H., I.E.W.); and Research School of Biological
Sciences, Australian National University, Canberra, ACT 2601, Australia
(T.J.A.)
 |
ABSTRACT |
The regulation of
ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) activity by
2-carboxyarabinitol 1-phosphate (CA1P) was investigated using
gas-exchange analysis of antisense tobacco (Nicotiana
tabacum) plants containing reduced levels of Rubisco activase.
When an increase in light flux from darkness to 1200 µmol quanta
m 2 s 1 was followed, the slow increase in
CO2 assimilation by antisense leaves contained two phases:
one represented the activation of the noncarbamylated form of Rubisco,
which was described previously, and the other represented the
activation of the CA1P-inhibited form of Rubisco. We present evidence
supporting this conclusion, including the observation that this second
phase, like CA1P, is only present following darkness or very low light
flux. In addition, the second phase of CO2 assimilation was
correlated with leaf CA1P content. When this novel phase was resolved
from the CO2 assimilation trace, most of it was found to
have kinetics similar to the activation of the noncarbamylated form of
Rubisco. Additionally, kinetics of the novel phase indicated that the
activation of the CA1P-inhibited form of Rubisco proceeds faster than
the degradation of CA1P by CA1P phosphatase. These results may be
significant with respect to current models of the regulation of Rubisco
activity by Rubisco activase.
 |
INTRODUCTION |
The proportion of active Rubisco, the enzyme responsible for
CO2 fixation in photosynthetic cells, is
modulated in response to changes in incident PPFD in parallel with
changes in flux through photosynthesis. Cells exposed to high
irradiance will have more Rubisco in the activated form than cells
exposed to a lower irradiance. The regulation of Rubisco activity
involves the reversible binding of CO2 and
Mg2+ to the active site (Lorimer and Miziorko,
1980 ). In this carbamylated state the site is catalytically active;
when it is not carbamylated the site is inactive. In the carbamylated
state the active site can bind the substrate RuBP and catalyze either
carboxylation or oxygenation. The noncarbamylated active site can also
bind RuBP. However, this noncatalytic binding of RuBP, which is
relatively tight because of the absence of catalytic release pathways,
prevents access of other compounds to the active site, precluding
carbamylation and maintaining the enzyme in an inactive form (Jordan
and Chollet, 1983 ). Some plants have an additional mechanism for
regulating Rubisco activity in response to light that does not involve
carbamylation-decarbamylation. In these plants the inhibitor CA1P binds
to the carbamylated active site, preventing RuBP binding and subsequent
catalysis (Gutteridge et al., 1986 ; Berry et al., 1987 ; Moore and
Seemann, 1994 ).
CA1P is present in darkened leaves of numerous species including
tobacco (Nicotiana tabacum; Servaites et al.,
1986), bean (Berry et al., 1987), potato (Gutteridge et
al., 1986), and beet (Moore et al., 1991). In
most species that contain CA1P, it accumulates in darkened leaves to
concentrations approaching that of Rubisco active sites, but little if
any is present in irradiated leaves. Because of its high affinity for
the carbamylated active site (Kd = 32 nM; Berry et al., 1987), the presence of
equimolar amounts of CA1P to active sites would almost completely
inhibit Rubisco in leaves.
The stromal protein Rubisco activase activates both
inactive forms of Rubisco, the noncarbamylated, RuBP-ligated form and the CA1P-inhibited form, by forcing the dissociation of the
inactivating ligand (Robinson and Portis, 1988 ; Portis, 1992 ). Rubisco
activase is required to maintain high Rubisco activity levels in leaves grown at ambient CO2 concentrations. Arabidopsis
(Portis, 1992 ) and tobacco mutants (Mate et al.,
1993, 1996) with undetectable or low amounts of activase can survive
only when grown at elevated CO2 concentrations.
Activase activity is also important in determining the rate of Rubisco
activation following an increase in light flux. In experiments in which
antisense tobacco plants contained reduced activase levels, the rate at
which the noncarbamylated form of Rubisco was activated following an
increase in light flux was proportional to the activase content
(Hammond et al., 1998).
Although activase catalysis releases CA1P from the active site of
Rubisco, it does not convert CA1P into an uninhibitory form. This is
thought to be the role of specific phosphatases that have been isolated
from the chloroplasts of tobacco (Salvucci et al., 1988) and
bean (Moore et al., 1995). These enzymes hydrolyze CA1P to
2-carboxyarabinitol and Pi, neither of which are strong inhibitors of
Rubisco. They do not, however, dephosphorylate the CA1P bound to
Rubisco sites (Salvucci et al., 1988). Thus, phosphatases
can affect activation only by influencing the amount of free CA1P. The
activities of phosphatases are affected by a range of metabolites. Generally, those at relatively high concentrations in illuminated leaves activate CA1P phosphatases, whereas Pi, which would be at a
higher concentration in darkness, is inhibitory (Gutteridge and Julien,
1989 ; Holbrook et al., 1991; Kingston-Smith et
al., 1992; Charlet et al., 1997). The nature of
the interactions between CA1P phosphatase and metabolites indicates a
role for this enzyme in the light regulation of Rubisco activity
through its effect on stromal CA1P concentration.
To date, most studies of the regulation of Rubisco by CA1P have focused
on biochemical measurements of leaf CA1P content and Rubisco activity
under different light conditions. Additionally, there has been
considerable progress made in elucidating the CA1P biosynthetic and
degradative pathways (Andralojc et al., 1994, 1996; Martindale et al., 1997). Here we describe an
investigation of the regulation of Rubisco activity by CA1P in intact
leaves, in which primarily a gas-exchange technique was used to analyze the kinetics of Rubisco activation (Woodrow and Mott, 1989 ; Mott and
Woodrow, 1993 ). Using antisense tobacco plants containing reduced
levels of Rubisco activase, we were able to discern a phase in the
activation of Rubisco that represents the activation of the
CA1P-inhibited form of Rubisco.
 |
MATERIALS AND METHODS |
Plant Material
Two genotypes of tobacco (Nicotiana tabacum L. cv
Wisconsin 38) were used in these experiments: wild type and a type
transformed with antisense DNA targeted at the Rubisco activase protein
(Mate et al., 1993). The transgenic plants contained T-DNA
from p TACT having antisense genes containing the 3 two-thirds of
the Rca mRNA. The R1 progeny of the
primary transformant A52, which had two T-DNA inserts (Mate et
al., 1993), was used. Typically, the leaves of antisense
plants had Rubisco activase levels approximately 10% to 20% of those
of the wild type. The plants were grown from seed in potting medium
consisting of 50% vermiculite, 25% sand, and 25% pine bark in a
controlled-environment growth cabinet. They were supplied with
one-quarter-strength Hoagland solution every 2 d and exposed to a
PPFD of 350 µmol m 2
s 1 with a photoperiod of 12 h. Photoperiod
and darkness air temperatures were 25°C and 20°C, respectively.
Gas Exchange
Gas-exchange measurements with a single-pass system similar to the
one described by Mott (1988) were made to determine leaf photosynthetic and respiratory rates. A differential IR analyzer (model
225 Mark 3, Analytical Development Company, Hertfordshire, UK) was used
to measure the CO2 concentration, and a dew-point hygrometer (Dew-10, General Eastern Instruments, Watertown, MA) was
used to measure water vapor concentration. A type t thermocouple was
used to measure leaf temperature. The upper surface of the leaf was
illuminated using a 400-W metal halide lamp. The net CO2 assimilation rate (A), the
stomatal conductance (gs), and the leaf
intercellular CO2 concentration
(ci) were calculated using the equations of
von Caemmerer and Farquhar (1981) . Before experiments were initiated
the leaves were exposed to a PPFD of 1200 µmol
m 2 s 1 for 60 min.
Typically, the rate of CO2 assimilation by leaves
was measured continually following an increase in PPFD from darkness or 105 to 1200 µmol m 2
s 1. Before the PPFD was increased, the leaves
were exposed to darkness or to the low light intensity for various
periods ranging from 10 to 120 min. The RH of the air being supplied to
the chamber was 70% during measurements. However, this was increased
to 90% during the period of reduced illumination to reduce the decline in gs. Gas-exchange data were recorded at
5-s intervals until A had reached a steady state. During the
gas-exchange measurements, leaf temperature was 25°C. A
was normalized to a ci of 250 µL L 1 unless otherwise stated, to compensate for
changes in the rate of assimilation resulting from changes in
ci. Normalization assumes that the
relationship between A and ci is
linear and passes through the CO2-compensation
point (Woodrow and Mott, 1989 ).
CA1P Analysis
Leaf discs (1.43 cm2) were excised from
leaves exposed to various light environments and then rapidly frozen in
liquid N2 within 2 s of excision. The CA1P
content was then determined using a method similar to that of Moore et
al. (1991) . The frozen leaf tissue was ground to a fine powder with a
mortar and pestle in liquid N2 and extracted
rapidly with 300 µL of 0.46 N
HClO4. This mixture was centrifuged for 3 min at
13,800g before a 150-µL aliquot of the supernatant was
taken and neutralized with 47.5 µL of a solution containing 1.67 N KOH and 0.133 M Hepes. The neutralized extract was incubated at 4°C for 30 min to allow maximal
precipitation of KClO4, and the solution was
further clarified by centrifugation for 1 min at 13,800g.
The CA1P concentration in the extracts was determined by measuring its
inhibition of purified and carbamylated Rubisco. Rubisco was purified
from spinach according to the procedure of Edmondson et al. (1990) and
was activated for 1 h at 4°C in a buffer comprising 200 mM Bicine-KOH, pH 8.2, 30 mM
NaHCO3, 40 mM
MgCl2, 5 mM DTT, and 32 µM Rubisco active sites. An equal volume of the CA1P
extract was added to the activated Rubisco, making the final
concentration 100 mM Bicine-KOH, pH 8.2, 15 mM
NaHCO3, 20 mM
MgCl2, 2.5 mM DTT, and 16 µM Rubisco active sites. The activated Rubisco was
incubated with the CA1P extract for 20 min at 25°C before being added
to an assay with a final volume of 0.5 mL consisting of 50 mM Bicine-KOH, pH 8.2, 15 mM
NaH14CO3 (specific activity
3.7 GBq mol 1), 20 mM
MgCl2, 0.5 mM RuBP, and 5 mM DTT. The assay was stopped after 30 s by adding 0.5 mL of 2 N HCl and evaporated to dryness with heating.
Acid-stable 14C fixed by Rubisco was determined
using liquid-scintillation counting. Inhibition of Rubisco by CA1P was
quantified by comparing with assays containing identical amounts of
Rubisco but no CA1P. It was assumed that each inactive Rubisco site was
bound with one molecule of CA1P and that all CA1P was bound to Rubisco
sites (i.e. negative cooperativity was negligible), because there was always at least a 3-fold excess of Rubisco sites compared with the CA1P
concentration.
 |
RESULTS |
Rubisco Activation in the Wild Type
When a wild-type tobacco leaf was exposed to a low light flux (105 µmol m 2 s 1) for 30 min and then to a sudden increase in PPFD to 1200 µmol m 2 s 1, there were two
kinetically distinct phases during the subsequent increase in
A. The first was a fast phase, presumably representing rapid
RuBP production (Woodrow and Mott, 1992 ), and the second was a slower,
exponential phase, representing the production of active Rubisco from
inactive forms (Fig. 1A; Woodrow and
Mott, 1992 ). The kinetics of this second Rubisco phase have been used in several studies to examine the activation of Rubisco in leaves of
spinach, wild-type tobacco, and anti-activase tobacco (Woodrow and
Mott, 1989 , 1992 ; Mott and Woodrow, 1993 ; Hammond et al., 1998). The same kinetic analysis was used here. We first plotted the ln
of the difference between the final A
(Af) and A to confirm that
this second phase was linear. It showed exponential kinetics from about
1.2 min on (Fig. 1B). We then used nonlinear regression analysis to fit
a curve to the data points in this Rubisco phase. The equation of the
curve is:
|
(1)
|
where Ai is the initial extrapolated
assimilation rate at time 0 (when the PPFD was increased),
ka is the apparent rate constant for the
phase, and t is time after the increase in PPFD. The
Af, Ai, and
ka values for the experiment in Figure 1A
were 20.45 µmol m 2
s 1, 11.35 µmol m 2
s 1, and 0.503 min 1,
respectively. The initial velocity of Rubisco activation
(vi) was calculated by first
differentiating Equation 1, which yields the following equation:
|
(2)
|
where A is the rate of increase in A. At
time 0 this equation becomes
|
(3)
|
where A i is the
initial rate of increase in A. Using the rate equations and
the kinetic constants for carboxylation and oxygenation by Rubisco (von
Caemmerer et al., 1994), we converted
A i into
vi and Af
Ai into the amount of Rubisco
activated during the light-intensity transient. In calculating
vi, we assumed that the RuBP concentration
was saturating for Rubisco activity and that respiration did not change
(Woodrow and Mott, 1989 ). For the experiment in Figure 1A,
vi was 76.03 nmol active sites
m 2 s 1. We also
calculated the proportion of Rubisco active sites that were inactive
before the PPFD was increased (Pr):
|
(4)
|
In the example shown in Figure 1A, the value of
Pr was 0.45.

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| Figure 1.
A comparison of the increase in A
upon illumination of a wild-type (A and B) and an antisense tobacco
leaf (C and D) following exposure to either darkness or low light flux.
The leaf was either illuminated at a PPFD of 105 µmol
m 2 s 1 for 30 min ( ) or darkened for 60 min ( ) before the light flux was increased to 1200 µmol
m 2 s 1 at time 0. A, A
plotted over time. B, The ln of the difference between the final
assimilation rate (Af) and the measured
A plotted over time. The linear portions of the logged
data are exponential and exponential curves were fitted to these
portions (solid lines in A and B). C, Same as A except for an antisense
plant. D, Same as B except for an antisense plant.
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Another experiment was done with the same wild-type leaf that was
darkened for 60 min before being exposed to a PPFD of 1200 µmol
m 2 s 1. The kinetics of
Rubisco activation were also exponential, but the rate constant was
different (Fig. 1, A and B). Analysis of the exponential Rubisco phase
revealed that both the Pr (0.66) and the
vi (91.94 nmol sites
m 2 s 1) were higher when
the initial condition was darkness instead of low PPFD.
Novel Phase of Rubisco Activation in Anti-Activase Tobacco
When similar experiments were done using an anti-activase plant,
the kinetics of the increase in CO2 assimilation
from low PPFD were slower but still consisted of the two distinct
phases present in the wild type (Fig. 1C). The assimilation kinetics from darkness, however, showed a significant qualitative difference from those of the same leaf when the initial PPFD was 105 µmol quanta
m 2 s 1 and from those of
the wild type (Fig. 1C). Instead of one slow phase (the Rubisco phase)
after the initial fast phase, there were two. The first of these slower
phases did not persist beyond 10 min after the increase in PPFD. The
second slower phase dominated the time course from about 10 min after
the increase in PPFD until a steady state was approached. This phase
showed exponential kinetics typical of the Rubisco phase, as indicated
by the linearity of a semilogarithmic plot of this portion of the data
(Fig. 1D). The curve through the solid points in Figure 1, C and D, is
an exponential function (Eq. 1) fitted to the linear portion of the log
plot after the novel phase had ceased. From these curve analyses, the
Af values were found to be similar for the
two antisense experiments: from darkness (21.79 µmol
m 2 s 1) and from low
PPFD (21.58 µmol m 2
s 1). The Pr value,
however, was higher following 60 min of darkness (0.72) than following
30 min of low PPFD (0.51). The vi from
darkness (12.26 nmol sites m 2
s 1) was not appreciably different from that
from low PPFD (13.75 nmol sites m 2
s 1).
To analyze the kinetics of the novel phase we subtracted the
contribution of the Rubisco phase from the overall assimilation time
course according to the following equation:
|
(5)
|
Therefore, the difference between the two curves
(Ad) approaches 0 as t
approaches infinity (i.e. steady state). The change in
Ad over time was then used to describe the
kinetics of the novel phase, which is clearly distinguishable from the
fast RuBP phase in the antisense plants (Fig.
2, A and B). The latter phase was
complete after approximately 2 min. In contrast to the antisense plant,
no additional phase could be distinguished in the plot of
Ad over time for the wild type (Fig. 2B).

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| Figure 2.
Resolution of the various phases from the
activation of A following illumination of a darkened
antisense leaf. A, A trace ( ) with an exponential
curve fit to the exponential portion (solid line). The amount of
Rubisco sites sequestered in the E*R form
(Ai) and the vi
were calculated from extrapolation of this exponential curve to time 0. B, Difference between the exponential fit and the measured
A (Ad) plotted over time for
an antisense plant ( ) and a wild-type plant ( ). C, Portion of the
antisense data after the rapid RuBP-limiting phase and before the later
exponential Rubisco phase (when Ad equals 0;
see ``Results'') plotted over time. To these data another exponential
curve of the same form as that used to characterize the Rubisco phase
was fitted (line).
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To quantify the contribution of the novel phase to the overall increase
in photosynthetic rate, we needed to extrapolate it to 0 time as we had
done for the Rubisco phase. Unlike the latter phase, however, the
kinetics of the novel phase are apparently more complex. After
completion of the RuBP phase (at about 2 min), the velocity (i.e. the
rate of change in Ad) decreases gradually with time, and then toward the end, it decreases relatively rapidly to
0 (Fig. 2B). Accordingly, we could not fit the entire novel phase
adequately to an exponential function decaying to 0 at infinite time.
However, by eliminating the last part of the curve (no more than 10%
of the total change in Ad during the phase)
and the initial RuBP phase (the first 2.5 min), we could model the
kinetics of Ad extremely accurately using
an exponential function (Eq. 2). In each case the exponential function
was more highly correlated with the data than the linear function.
Also, removal of more data at either the beginning or end of the time
course had little if any effect on the shape of the fitted exponential
curve. An example of the curve fitting is shown in Figure 2C. In this
case, the time course is clearly curved, and in accordance with this, the exponential equation was more correlated with the data than the
linear function.
We then used this exponential function to extrapolate
Ad to 0 time. This extrapolated value
(Aid) was used with the kinetic constants
for Rubisco (see above) to calculate both the number and proportion
(Pc) of Rubisco sites inactivated by CA1P
(i.e. that which accounts for the novel phase) before the PPFD was
increased. The latter is given by the following equation:
|
(6)
|
For the example plotted in Figure 2, the number of Rubisco sites
in this form was determined to be 4.06 µmol
m 2, compared with 10.63 µmol
m 2 in the noncarbamylated form. The
contribution of Pc was 0.28, whereas the
value of Pr was 0.72. This means that the
novel phase accounted for 28% of the total increase in Rubisco
activity following the increase in PPFD. Differentiation of the
exponential equation fitted to this phase allowed us to determine the
initial velocity of Rubisco activation during this phase:
|
(7)
|
where A if is the
initial rate of increase of this resolved phase and
Afd is the final
Ad value determined by the exponential curve-fitting process. This value was negative and had no mechanistic significance. Again, this initial rate of assimilation increase (A if) was converted into the
initial rate of Rubisco site activation (vid) using the kinetic constants for
Rubisco. The initial velocity of Rubisco activation in the Rubisco
phase (vi) was 12.3 nmol sites
m 2 s 1, whereas
vid was 15.8 nmol sites
m 2 s 1.
Correlation of CA1P Content with the Magnitude of the Novel
Gas-Exchange Phase
The next experiments involved testing the hypothesis that the
novel phase detectable in the antisense plants reflects removal of CA1P
from ECM. We raised this hypothesis because it is known that CA1P
regulates Rubisco activity to a degree in darkened tobacco leaves
(Servaites et al., 1986 ; Moore et al., 1991 ). By varying the dark
period before increasing the PPFD, we were able to vary the magnitude
of the novel phase (Afd Aid) and correlate this with leaf CA1P
content. We found that the number of Rubisco sites sequestered in the
form responsible for the novel phase (the dark-originating form of
inactive Rubisco) indeed correlated linearly with the amount of CA1P
extracted from the same leaf after being exposed to the same period of
darkness (Fig. 3A). The biochemical assay for CA1P did not exclude the possibility that other naturally occurring, tight-binding inhibitors of the carbamylated Rubisco active
site were contributing to the reduced in vitro Rubisco activity that we
attributed to CA1P alone. When treated with alkaline phosphatase,
however, the inhibitor(s) of Rubisco extracted from darkened tobacco
leaves was found to dissociate with kinetics similar to those of
purified CA1P (Berry et al., 1987 ).

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| Figure 3.
A, The correlation of Rubisco sites in the
inactive form responsible for the novel gas-exchange phase with leaf
CA1P content (r2 = 0.85). The amount of CA1P
and inactive sites was varied by altering the period for which the leaf
was darkened. The data are also plotted separately as a function of
time in darkness. B, Inactive Rubisco. C, CA1P content ( ). CA1P
content for the wild-type is also plotted ( ). Inactive Rubisco sites
were quantified from gas-exchange measurements made on several leaves
of one plant. Leaf CA1P content was determined biochemically using
samples taken from one of the leaves used for gas exchange.
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|
We also used the data presented in Figure 3A to examine the
relationship between the time in darkness and the magnitude of the
novel phase. We found that this phase had similar sigmoidal kinetics to
the CA1P determined biochemically (Fig. 3, B compared with C). The
formation of CA1P in darkened leaves was also determined for wild-type
tobacco using the biochemical assay, and these data show that reduction
in the activase concentration had a negligible effect on the rate of
CA1P formation and the final steady-state concentration of CA1P (Fig.
3C).
Relationship between CA1P Disappearance and Gas-Exchange
Kinetics
Apart from correlating the appearance of the novel phase (which we
will now refer to as the CA1P phase) with CA1P concentration, experiments were also conducted to study the relationship between the
activation of this form of Rubisco and the metabolism of CA1P in
reilluminated leaves in the non-steady state. Following 90 min of
darkness, the activation of Rubisco in an anti-activase leaf exposed to
a PPFD of 1200 µmol m 2
s 1 was measured using gas exchange, and the
kinetics of the CA1P phase were determined. The experiment was repeated
with the same leaf, except that instead of making gas-exchange
measurements leaf samples were taken at various times and the CA1P
content was determined. From the gas-exchange data, the initial amount of inactive Rubisco sites in the dark-originating form was 4.20 µmol
m 2, which correlated with the CA1P content of
the leaf (3.57 µmol m 2; Fig.
4A). During the non-steady state,
however, there was less correlation between inactive Rubisco sites and
the CA1P content. The leaf CA1P content was higher than the number of
inactive Rubisco sites except at low levels of CA1P (Fig. 4B). There
was significant deviation from the proportional relationship between
CA1P and inactive Rubisco sites that would be expected if CA1P binding was very tight and if CA1P degradation following release from Rubisco
was very fast (Fig. 4B).

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| Figure 4.
A, The relationship between leaf CA1P content
determined biochemically ( ) and the dark-originating form of
inactive Rubisco sites ( ) following an increase in PPFD from
darkness to 1200 µmol m 2 s 1. B, Same data
replotted to examine the correlation between leaf CA1P and inactive
Rubisco. The dashed line is the relationship expected if CA1P binding
to Rubisco sites is complete and CA1P degradation following release is
very fast, i.e. a proportional relationship. The amount of CA1P in an
antisense leaf predarkened for 90 min was determined for samples taken
at various periods after increasing the PPFD to 1200 µmol
m 2 s 1. The activation kinetics of the
dark-originating form of inactive Rubisco was previously determined for
the same leaf following 90 min of darkness.
|
|
 |
DISCUSSION |
The data presented here indicate that light-mediated Rubisco
activation in previously darkened tobacco leaves can be substantially limited by two processes: the carbamylation of the inactive enzyme and
removal of CA1P from the active enzyme. By slowing down the rate of
Rubisco activation using anti-activase plants, we were able to resolve
the kinetics of these two processes. Carbamylation proceeds
exponentially, as has been described previously (Woodrow and Mott,
1992 ; Woodrow et al., 1996; Hammond et al.,
1998), but the kinetics of CA1P removal are more complex. For much of
the time the velocity (i.e. the rate of change of
Ad) decreased relatively slowly, but at
very low concentrations of the active enzyme-CA1P complex it declined
rapidly to 0.
There is considerable evidence that the novel phase in the assimilation
time course reflects the removal of CA1P from the carbamylated form of
Rubisco. Like CA1P, the form of inactive Rubisco responsible for this
phase appeared only in leaves exposed to very low light fluxes. The
amount of extractable CA1P determined biochemically for anti-activase
leaves that had been held in darkness for varying periods correlated
with the amount of Rubisco in the form responsible for the novel phase
(Fig. 3A). In view of the relatively high affinity of active Rubisco
for CA1P (Kd = 32 nM; Berry et
al., 1987), it is likely that almost all of the CA1P extracted was initially complexed with Rubisco. Thus, our data show a
direct correlation between the concentration of the CA1P-inhibited form
of Rubisco and the magnitude of the CA1P phase over a considerable range of CA1P concentrations. Moreover, the appearance of the inactive
form of Rubisco when a leaf was removed to darkness followed kinetics
similar to the those of CA1P determined biochemically (Fig. 3, B and
C). It is noteworthy that these kinetics are consistent with published
rates of CA1P synthesis in bean after darkening (Sage et
al., 1993; Andralojc et al., 1994,
1996).
We did not expect a tight correlation between the total CA1P content
and the calculated amount of CA1P-inhibited Rubisco at any point during
the CA1P phase. We expected that a significant pool of free CA1P would
accumulate in the stroma under these non-steady-state conditions until
metabolized by CA1P phosphatase, and this was observed (Fig. 4). This
relationship between total CA1P content and the amount of
CA1P-inhibited Rubisco during these conditions is consistent with the
small amount and low specific activity of CA1P phosphatase in tobacco
(Gutteridge and Julien, 1989 ; Salvucci and Holbrook, 1989 ; Holbrook et
al., 1991). The lag in degradation of CA1P following its
removal from Rubisco sites is significant because it indicates that the
activation of the CA1P-inactivated form of Rubisco is controlled by
activase and not by CA1P phosphatase.
The activity of purified CA1P phosphatase is regulated by metabolites,
including NADPH, RuBP, and Pi, in a way that would promote its activity
in illuminated leaves and inhibit it in darkened leaves (Salvucci et
al., 1988; Holbrook et al., 1991; Kingston-Smith et al., 1992). Despite this apparent regulation, which
suggests a role for CA1P phosphatase in the regulation of Rubisco
activity, our data indicate that the activity of this enzyme during the non-steady state would not be sufficient to affect the equilibrium between ECMc and ECM or between ECM"c and ECM by degrading free CA1P
(see Fig. 5 for a description of these
forms of Rubisco). The significant concentration of free CA1P present
in the stroma during activation would not favor CA1P dissociation from
Rubisco. Instead, it is likely that activase favors CA1P release
through its catalysis of ECMc to ECM c and the effect of this on the
equilibrium between ECM c and ECM"s (Fig. 5).

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| Figure 5.
The pathways involved in the regulation of Rubisco
activity. Rubisco active sites (E) can bind sequentially an activator
CO2 (C) and a Mg2+ ion (M) to form the active
ternary complex ECM. This form can then bind substrate RuBP (R) and
catalyze either carboxylation or oxygenation. Rubisco sites may be
inactivated by either of two mechanisms: the binding of R to the
noncarbamylated E and the binding of CA1P (c) to ECM. The E form binds
R in two stages: an initial loose association occurs (ER), followed by
a slow conformational change to produce the higher affinity form E*R.
The binding of c to ECM also probably takes two steps, initially
forming ECMc and finally forming ECM c. Activase interacts with forms
of Rubisco associated with sugar phosphates (such as RuBP and CA1P) in
a manner that reduces the affinity of Rubisco for the ligand. ECM c is
converted into ECM"c, which readily dissociates to produce ECM, and
E*R is converted into E R, which readily dissociates to
produce E. There is no evidence that either E R is
different from ER or ECM"c is different from ECMc. We differentiate
between them because they arise from different processes and,
therefore, may be different. The products of activase catalysis
(E R and ECM"c) are not necessarily homologous. PGA,
Phosphoglyceraldehyde.
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We did not biochemically characterize the processes responsible for the
Rubisco phase because this has been done previously (Hammond et al.,
1998 ). What we have shown for tobacco is that the exponential Rubisco
phase represents the activation of the noncarbamylated form of Rubisco
chelated with RuBP (Fig. 5). This is most likely a sequential process
in which activase first facilitates the dissociation of RuBP, allowing
carbamylation of the site to then complete its activation (ECM). This
process has been shown to be limited by activase activity when
activation occurs from low PPFDs (Hammond et al., 1998).
Hammond et al. (1998) also suggested that the production of active
Rubisco is exponential because activase activity is down-regulated as
activation proceeds. The prime candidates for such regulation are ATP
and ADP. Activase activity is regulated by ATP positively and by ADP
negatively (Robinson and Portis, 1989 ; Portis, 1992 ), enabling activase
catalysis to be modulated downward as Rubisco activity and the Calvin
cycle flux increases. If the exponential decline in Rubisco activation
rate indeed reflects a proportional reduction in activase activity,
then this change should also affect the kinetics of CA1P removal,
assuming that activase is largely responsible for CA1P removal from
active Rubisco (Robinson and Portis, 1988 ).
To test this hypothesis we compared A with the rate of
change in A during the CA1P phase (i.e. the absolute slope
of the Ad versus the time plot; Fig.
6). According to our hypotheses regarding
the mechanisms underlying these two phases, this is equivalent to
comparing the velocity of CA1P removal from ECM with the velocity of
RuBP removal from the Rubisco active site during most of the CA1P
phase. Although there was not a large change in either velocity for the
three examples shown in Figure 6, we found that they were very highly
correlated. Such a relationship is consistent with a model of Rubisco
activation by activase involving simultaneous catalysis of the removal
of RuBP (from the Rubisco active site) and CA1P (from ECM, Fig. 5) and
progressive down-regulation of activase activity as A
increases.

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| Figure 6.
Three examples of the relationship between the
rate of increase in A (A ), as determined
by the exponential fit to the Rubisco phase, and the rate of increase
in Ad
(A d), as determined
by the exponential fit to the CA1P phase. The different examples
represent separate gas-exchange experiments in which antisense tobacco
plants were darkened for different periods before increasing the PPFD
(the times are indicated on the figure). The solid line indicates data
transformed from the experiment shown in Figure 2.
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|
The hypothesis that activase is subject to flux-related feedback
inhibition can also be tested by measuring
vi during the Rubisco phase. Because there
was less active Rubisco after sustained darkness than after low PPFD in
our experiments, vi should be faster from
darkness than from low PPFD, assuming that factors (other than Rubisco
activity) affecting the feedback mechanism are constant. This
prediction also applies to wild-type tobacco. In the experiment in
which darkness was used, the Pr was 0.66 and the vid was 91.94 nmol sites
m 2 s 1. In the
experiment in which low PPFD was used, the
Pr was 0.45 and the
vi was 76.03 nmol sites
m 2 s 1 (Fig. 1A). The
antisense plants, however, had a slightly lower rate of activation from
darkness than low PPFD, despite there being a larger amount of inactive
Rubisco after darkening. This discrepancy could reflect the difficulty
of accurately measuring the initial rate of activation when an
extrapolation of 7 min is required, or it could reflect a more complex
regulatory mechanism than the one proposed.
The CA1P phase was not visible in the wild type during activation from
darkness, which is not surprising in view of the speed of the process,
even though CA1P was present in wild-type leaves at concentrations
similar to those in the antisense plants when darkened for the same
period (Fig. 3C). The reason for the absence of this phase is that the
activation of the CA1P-inhibited form of Rubisco is complete before
CO2 assimilation becomes limited by Rubisco in
the wild-type plants. The antisense plants, which typically had
approximately 10% to 20% of the activase of the wild type, activated
the putative CA1P-inhibited form in about 7 to 8 min. If we assume that
the rate of activation of this form is dependent on activase
concentration (like the RuBP-inhibited form; Hammond et al.,
1998), then it would take approximately 1 to 1.5 min for complete
activation of the CA1P-inhibited form in the wild type. This is short
enough for the activation of this form to be obscured by the
non-Rubisco-limiting portion of the CO2-assimilation trace (i.e. the fast phase; Fig.
1A).
The kinetics of CA1P synthesis were unaffected by the reduced amounts
of activase in the antisense plants compared with the wild type (Fig.
3C). This is compatible with the finding that reduced levels of
activase have a negligible effect on the kinetics of formation of the
other inactive form of Rubisco (E*R) under low PPFD (Hammond et
al., 1998). If activase catalysis during darkness was
significant, then the reduced levels of activase in the antisense
plants may have affected CA1P formation. The lack of an effect
indicates that activase does not interact significantly with Rubisco
during darkness.
The regulation of Rubisco activity by CA1P has been enigmatic. The rate
at which the form of Rubisco inhibited by CA1P is activated and the
factors limiting this process have remained undefined. We were able to
measure relatively accurately the kinetics of activation of a form of
Rubisco in tobacco leaves that is probably inhibited by CA1P. When we
compared these kinetics with the rate of CA1P degradation, it became
apparent that significant concentrations of CA1P accumulate in the
stroma during Rubisco activation. Such an accumulation of CA1P
indicates that control of activation of the CA1P-inhibited form of
Rubisco lies more with activase than with CA1P phosphatase. The rate of
activation of the CA1P-inhibited form of inactive Rubisco, like the
noncarbamylated form, appeared to be controlled by activase activity,
which was down-regulated as the flux increased. This latter suggestion
is supported by the finding that activase activity was regulated during
the activation of the ECM c form of Rubisco in a manner similar to the
activation of the E*R form.
 |
FOOTNOTES |
1
This work was supported by grants from the
Australian Research Council and the University of Melbourne. E.T.H.
received an Australian Postgraduate Award from the Australian Research
Council and a Collaborative Research Scholarship from the Australian
National University. I.E.W. was supported by a Senior Research
Fellowship from the Australian Research Council.
*
Corresponding author; e-mail i.woodrow{at}botany.unimelb.edu.au;
fax 61-3-9347-5460.
Received July 15, 1998;
accepted September 8, 1998.
 |
ABBREVIATIONS |
Abbreviations:
CA1P, 2-carboxyarabinitol 1-phosphate.
ECM, active ternary complex formed when Rubisco active sites (E) bind
sequentially an activator CO2 (C) and a Mg2+
ion (M).
RuBP, ribulose 1,5-bisphosphate.
 |
LITERATURE CITED |
Andralojc PJ,
Dawson GW,
Parry MAJ,
Keys AJ
(1994)
Incorporation of carbon from photosynthetic products into 2-carboxyarabintol-1-phosphate and 2-carboxyarabinitol.
Biochem J
304:
781-786
Andralojc PJ,
Keys AJ,
Martindale W,
Dawson GW,
Parry MAJ
(1996)
Conversion of D-hamamelose into 2-carboxy-D-arabinitol and 2-carboxy-D-arabinitol 1-phosphate in leaves of Phaseolus vulgaris L.
J Biol Chem
271:
26803-26809
[Abstract/Free Full Text]
Berry JA,
Lorimer GH,
Pierce J,
Seemann JR,
Meek J,
Freas S
(1987)
Isolation, identification, and synthesis of 2-carboxyarabinitol 1-phosphate, a diurnal regulator of ribulose-bisphosphate carboxylase activity.
Proc Natl Acad Sci USA
84:
734-738
[Abstract/Free Full Text]
Charlet T,
Moore Bd,
Seemann JR
(1997)
Carboxyarabinitol 1-phosphate phosphatase from leaves of Phaseolus vulgaris and other species.
Plant Cell Physiol
38:
511-517
[Abstract/Free Full Text]
Edmondson DL,
Badger MR,
Andrews TJ
(1990)
A kinetic characterization of slow inactivation of ribulose bisphosphate carboxylase during catalysis.
Plant Physiol
93:
1376-1382
[Abstract/Free Full Text]
Gutteridge S,
Julien B
(1989)
A phosphatase from chloroplast stroma of Nicotiana tabacum hydrolyses 2 -carboxyarabinitol 1-phosphate, the nocturnal inhibitor of Rubisco to 2 -carboxyarabinitol.
FEBS Lett
254:
225-230
[CrossRef]
Gutteridge S,
Parry MAJ,
Burton S,
Keys AJ,
Mudd A,
Feeney J,
Servaites JC,
Pierce J
(1986)
A nocturnal inhibitor of carboxylation in leaves.
Nature
324:
274-276
[CrossRef]
Hammond ET,
Andrews TJ,
Mott KA,
Woodrow IE
(1998)
Regulation of Rubisco activation in antisense plants of tobacco containing reduced levels of Rubisco activase.
Plant J
14:
101-110
Holbrook GP,
Galasinski SC,
Salvucci ME
(1991)
Regulation of 2-carboxyarabinitol 1-phosphatase.
Plant Physiol
97:
894-899
[Abstract/Free Full Text]
Jordan DB,
Chollet R
(1983)
Inhibition of ribulose bisphosphate carboxylase by substrate ribulose 1,5-bisphosphate.
J Biol Chem
258:
13752-13758
[Abstract/Free Full Text]
Kingston-Smith AK,
Major I,
Parry MAJ,
Keys AJ
(1992)
Purification and properties of a phosphatase in French bean (Phaseolus vulgaris L.) leaves that hydrolyses 2 -carboxy-D-arabinitol 1-phosphate.
Biochem J
287:
821-825
Lorimer G,
Miziorko H
(1980)
Carbamate formation on the -amino group of a lysyl residue as the basis for the activation of ribulosebisphosphate carboxylase by CO2 and Mg2+.
Biochemistry
19:
5321-5328
[CrossRef][Medline]
Martindale W,
Parry MAJ,
Andralojc PJ,
Keys AJ
(1997)
Synthesis of 2 -carboxy-D-arabinitol-1-phosphate in French bean (Phaseolus vulgaris L.): a search for precursors.
J Exp Bot
48:
9-14
Mate CJ,
Hudson GS,
von Caemmerer S,
Evans JR,
Andrews TJ
(1993)
Reduction of ribulose bisphosphate carboxylase activase levels in tobacco (Nicotiana tabacum) by antisense RNA reduces ribulose bisphosphate carboxylase carbamylation and impairs photosynthesis.
Plant Physiol
102:
1119-1128
[Abstract]
Mate CJ,
von Caemmerer S,
Evans JR,
Hudson GS,
Andrews TJ
(1996)
The relationship between CO2-assimilation rate, Rubisco carbamylation and Rubisco activase content in activase-deficient transgenic tobacco suggests a simple model of activase action.
Planta
198:
604-613
Moore Bd,
Kobza J,
Seemann JR
(1991)
Measurement of 2-carboxyarabinitol 1-phosphate in plant leaves by isotope dilution.
Plant Physiol
96:
208-213
[Abstract/Free Full Text]
Moore Bd,
Seemann JR
(1994)
Evidence that 2-carboxyarabinitol 1-phosphate binds to ribulose-1,5-bisphosphate carboxylase in vivo.
Plant Physiol
105:
731-737
[Abstract]
Moore Bd,
Sharkey TD,
Seemann JR
(1995)
Intracellular localization of CA1P and CA1P phosphatase activity in leaves of Phaseolus vulgaris L.
Photosynth Res
45:
219-224
[CrossRef]
Mott KA
(1988)
Do stomata respond to CO2 concentration other than intercellular?
Plant Physiol
86:
200-203
[Abstract/Free Full Text]
Mott KA,
Woodrow IE
(1993)
Effects of O2 and CO2 on non-steady-state photosynthesis. Further evidence of Rubisco limitation.
Plant Physiol
102:
859-866
[Abstract]
Portis AR
(1992)
Regulation of ribulose 1,5-bisphosphate carboxylase/oxygenase activity.
Annu Rev Plant Physiol Plant Mol Biol
43:
415-437
[CrossRef][ISI]
Robinson SP,
Portis AR
(1988)
Release of the nocturnal inhibitor, carboxyarabinitol-1-phosphate, from ribulose bisphosphate carboxylase/oxygenase by Rubisco activase.
FEBS Lett
233:
413-416
[CrossRef]
Robinson SP,
Portis AR
(1989)
Adenosine triphosphate hydrolysis by purified Rubisco activase.
Arch Biochem Biophys
268:
93-99
[CrossRef][ISI][Medline]
Sage RF,
Reid CD,
Moore Bd,
Seemann JR
(1993)
Long-term kinetics of the light-dependent regulation of ribulose-1,5-bisphosphate carboxylase/oxygenase activity in plants with and without 2-carboxyarabinitol 1-phosphate.
Planta
191:
222-230
[ISI]
Salvucci ME,
Holbrook GP
(1989)
Purification and properties of 2-carboxy-D-arabinitol 1-phosphatase.
Plant Physiol
90:
679-685
[Abstract/Free Full Text]
Salvucci ME,
Holbrook GP,
Anderson JC,
Bowes G
(1988)
NADPH-dependent metabolism of the ribulose bisphosphate carboxylase/oxygenase inhibitor 2-carboxyarabinitol 1-phosphate by a chloroplast protein.
FEBS Lett
231:
197-201
[CrossRef]
Servaites JC,
Parry MAJ,
Gutteridge S,
Keys AJ
(1986)
Species variation in the predawn inhibition of ribulose-1,5-bisphosphate carboxylase/oxygenase.
Plant Physiol
82:
1161-1163
[Abstract/Free Full Text]
von Caemmerer S,
Evans JR,
Hudson GS,
Andrews TJ
(1994)
The kinetics of ribulose-1,5-bisphosphate carboxylase/oxygenase in vivo inferred from measurements of photosynthesis in leaves of transgenic tobacco.
Planta
195:
88-97
[ISI]
von Caemmerer S,
Farquhar GD
(1981)
Some relationships between the biochemistry of photosynthesis and the gas exchange of leaves.
Planta
153:
376-387
[CrossRef][ISI]
Woodrow IE,
Kelly ME,
Mott KA
(1996)
Limitation of the rate of ribulosebisphosphate carboxylase activation by carbamylation and ribulose bisphosphate carboxylase activase activity: development and tests of a mechanistic model.
Aust J Plant Physiol
23:
141-149
Woodrow IE,
Mott KA
(1989)
Rate limitation of non-steady-state photosynthesis by ribulose-1,5-bisphosphate carboxylase in spinach.
Aust J Plant Physiol
16:
487-500
Woodrow IE,
Mott KA
(1992)
Biphasic activation of ribulose bisphosphate carboxylase in spinach leaves as determined from non-steady-state CO2 exchange.
Plant Physiol
99:
298-303
[Abstract/Free Full Text]
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