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Plant Physiol. (1999) 119: 1297-1304 An Allele of the Ripening-Specific 1-Aminocyclopropane-1-Carboxylic Acid Synthase Gene (ACS1) in Apple Fruit with a Long Storage Life1
Laboratory of Plant Breeding and Genetics, Faculty of Agriculture and Life Science (T.S., W.S., R.I., M.N., T.H.), and Gene Research Center (M.S., S.A.), Hirosaki University, Bunkyo-cho 3, Hirosaki 036-8561, Japan
An allele of the
1-aminocyclopropane-1-carboxylic acid (ACC) synthase gene
(Md-ACS1), the transcript and translated
product of which have been identified in ripening apples (Malus
domestica), was isolated from a genomic library of the apple
cultivar, Golden Delicious. The predicted coding region of this allele
(ACS1-2) showed that seven nucleotide
substitutions in the corresponding region of
ACS1-1 resulted in just one amino acid
transition. A 162-bp sequence characterized as a short interspersed
repetitive element retrotransposon was inserted in the 5
Ethylene is a gaseous plant hormone that regulates many
physiological processes in plant growth and development. Its synthesis is induced not only by stress, such as wounding, but also during unique
developmental stages, such as seed germination, fruit ripening, and
leaf and flower abscission (Yang and Hoffman, 1984 The apple is also a typical climacteric fruit, and therefore it appears
to be possible to extend its storage life by inhibiting ethylene
biosynthesis using antisense RNA technology (Hamilton et al., 1990 Dong et al. (1991) Plant Material
Measurement of IECs The internal gas was withdrawn from apple cortical tissue submerged in water under a vacuum, and a 1-mL aliquot of the gas sample was used to evaluate the IEC by GC.Genomic Library Screening and Sequence Analysis Genomic DNA was isolated from leaves using the method of Varadarajan and Prakash (1991)Southern-Blot Hybridization Genomic DNAs extracted from young leaves were digested with a restriction enzyme, separated by agarose gel electrophoresis, and blotted onto a membrane (Hybond N+, Amersham). A fragment of each probe DNA was labeled with 32P-dCTP using the Prime-It II random primer labeling kit (Stratagene), and the blots were hybridized with the probe at 65°C for 15 h in a hybridization buffer (10 mM Tris-HCl, pH 7.5, 1 mM EDTA, 6× SSC, 5× Denhardt's solution, 0.2 mg/mL salmon sperm DNA, 20 mM sodium phosphate buffer, and 1% SDS). The membrane was washed with 2× SSC/0.1% (w/v) SDS at room temperature for 30 min and 0.2× SSC/0.1% (w/v) SDS at 65°C for 15 min twice and then autoradiographed using Kodak x-ray film at 80°C and an intensifying screen.
Northern-Blot Hybridization Total RNA was isolated from apple fruit with guanidinium thiocyanate followed by centrifugation on a CsCl gradient (Lay-Yee et al., 1990 80°C.
PCR Amplification PCR was used to produce probe DNAs for ACS1-A, ACS1-B, and ACS3 (Rosenfield et al., 1996 region of the ACS1 transcription
product as follows. The reaction mixture comprised 1 µg of
poly(A+) RNA, 40 mM KCl, 1 mM DTT, 20 units
of RNase inhibitor, 50 units of RT (Perkin-Elmer) and the primer
ACS1-3 AR, and reverse transcription was carried out by incubating this
mixture at 42°C for 1 h. The tubes were then put on ice, 80 µL
of PCR reaction mixture comprising 1× buffer, the forward primer
ACS1-3 AF, 2.5 units of Taq polymerase, and 2.5 mM each dNTP were added, and PCR (30 cycles of
94°C for 2 min, 45°C for 1 min, and 72°C for 3 min) was carried
out. The first reaction solution and the ACS1-3 B primers were
subjected to a second PCR to obtain the product. The following
oligonucleotide primers (the positions being numbered according to
accession no. U89156 for ACS1 and no. U73816 for
ACS3) were used for the above reactions: ACS1-AF,
5 -TACCATGAGGTCCACAACAC-3 (2302-2321); ACS1-AR,
5 -GGTGAGCACTAAGTGGTTGGG-3 (2813-2793); ACS1BF,
5 -GATGAAAGGTAGCCTGGTCTGA-3 (4056-4077); ACS1-BR,
5 -TACACTAATCACATTGTATAGAATC-3 (4513-4489); ACS3-F, 5 -GACAAATAGAAAGAGACCTGAGGACG-3 (1086-1110); ACS3-R, 5 -CCATCGATTATACAAACTGATTGTG-3 (1573-1549); ACS1-3 AF,
5 -TCCACAACACAAACGGGATTATTCA-3 (3312-3336); ACS1-3 AR,
5 -AGGCTACCTTTCATCTACCGGGA-3 (4070-4048); ACS1-3 BF,
5 -ATCTTCTCGAGTCATGGCTGGC-3 (2489-2510); ACS1-3 BR, 5 -TTTCATCTACCGGGAATAGGACCGCGG-3 (4062-4036); ACS1-5 F,
5 -AGAGAGATGCCATTTTTGTTCGTAC-3 (861-887); and ACS1-5 R,
5 -CCTACAAACTTGCGTGGGGATTATAAGTGT-3 (1379-1350).
Allele of ACS1 Plaque hybridization of the apple cv Golden Delicious genomic library with the ACS1-A probe (Fig. 1) yielded 13 positive clones. Restriction mapping of their subcloned fragments suggested that the sequence of one clone was very similar to that of the Md-ACS1 gene reported previously (Harada et al., 1997 -flanking region. A 13-bp sequence from 594 to 607 of
ACS1-1 was tandemly repeated in
ACS1-2. Furthermore, a 24-bp sequence from 1308 to 1331 of ACS1-1 was missing from ACS1-2 and a 162-bp insertion sequence was found
at this site in ACS1-2 (Fig. 1). As shown in
Figure 2, Southern blotting with the
ACS1-A probe revealed that cv Golden Delicious had three positive fragments in its HindIII-digested genomic DNA, and two of
them (3.5 and 3.7 kb) were found to correspond to the fragments
containing ACS1-1 and
ACS1-2, respectively. The other 6.6-kb fragment
observed was thought to be derived from the homologous sequence of the gene family. However, some cultivars had either the
ACS1-1 or the ACS1-2
fragment only (Fig. 2B, lanes 1 and 3). Furthermore, cv Amanishiki,
which resulted from crossing the respective
ACS1-1 and ACS1-2 cvs Indo
and Ralus Janet, possessed both ACS1 fragments, as did cv
Golden Delicious (data not shown). In light of these results, we
concluded that ACS1-2 is an allele of
ACS1-1 in the apple genome.
Characteristics of the Insertion SINE Sequence As shown in Figure 1, we observed that the 162-bp insertion had a flanking 5-bp direct repeat (TTCAC), which led us to assume that this insertion is probably a transposable element. We also detected an A-rich tract at the 3 end and two conserved polymerase III motifs,
boxes A and B, which were located 40 bases apart. These are
characteristic features of the SINEs that have been identified in some
organisms (Umeda et al., 1991
Absence of or Very Low Level of ACS1-2 Expression Expression of the ACS1 gene during fruit ripening was studied by carrying out RNA gel-blot analysis of the total RNAs from apple fruit. The IEC of cv Golden Delicious fruit just after harvesting was 16 µL L 1, and after storage at 20°C for
12 d it increased to 296 µL L 1, whereas the IECs
of cv Fuji were 0.7 and 57 µL L 1, respectively. The
total RNAs extracted from these apples were hybridized with the probe
ACS1-B (Fig. 1), which DNA gel-blot analysis demonstrated was specific
for the ACS1 gene (data not shown). No positive signals were
detected in preclimacteric fruits of either cultivar, whereas clear
2.0-kb signals were detected in climacteric cv Golden Delicious fruit,
and those in cv Fuji fruit were very faint (Fig.
4). Even after prolonged autoradiography, no signals were detected in preclimacteric fruit. Then, the same membrane was hybridized with the ACS3 probe, which, in contrast to the
ACS1-B probe, yielded very similar signals in both cultivars, irrespective of their ripeness. The poly(A+) RNA
fractions extracted from climacteric fruit and the primers ACS1-3 A
(Fig. 5) were subjected to RT-PCR, and
products of the 3 region of the ACS1 mRNAs were obtained.
Distinct PCR products were amplified by a second PCR using the inside
primers (ACS1-3 BF and -3 BR) and first PCR product as the template
DNA. Then, we checked whether the product possessed the XhoI
site, which is located in the 3 region of ACS1-2
(Fig. 5), because nucleotide transition from adenine to guanine
resulted in the yield of the restriction site in
ACS1-2. As shown in Figure 5B, the digestion patterns show that both alleles were present in cv Golden Delicious genomic DNA, whereas the product from the cDNA fraction of cv Golden
Delicious was of the ACS1-1 type only, indicating
that the mRNA had been transcribed exclusively from the
ACS1-1 gene and not from
ACS1-2. In contrast, the digestion pattern showed that the RT-PCR product from cv Fuji was derived from the
ACS1-2 gene.
ACS1-2 Homozygosity of Cultivars Producing Little Ethylene We performed a survey of the ACS1 allele in apple cultivars and their corresponding wild species. To amplify the 5
region where the SINE-Md1 was inserted into the
ACS1-2 gene, we designed a set of primers,
ACS1-5 F and ACS1-5 R, for the sequences of ACS1 and carried
out PCR using each genomic DNA as the template. According to the
pattern of the PCR products (Fig. 6), it
was possible to classify the apple species into three groups that were
heterozygous or homozygous for the ACS1 alleles (Table
II). All of the wild species were either
ACS1-1 homozygous or
ACS1-1/ACS1-2 heterozygous. It is
interesting that all of the cultivars that were homozygous for
ACS1-2 produced apples with good, long-term storage properties and/or that produced little ethylene, like cv Fuji.
An ACS1 allele characterized by the presence of a SINE
in its 5
* Corresponding author; e-mail tharada @cc.hirosaki-u.ac.jp; fax 81-172-39-3750. Received July 7, 1998;
accepted December 15, 1998.
Abbreviations: ACS, ACC synthase. IEC, internal ethylene concentration. RT, reverse transcriptase. SINE, short interspersed DNA element.
We are grateful to J. Soejima and T. Masuda of the National Institute of Fruit Tree Science (Morioka, Japan) and T. Sato and T. Kon of the Aomori Prefectural Apple Experiment Station (Kuroishi, Japan) for providing the plant materials used in this investigation. We also thank S. Jin and T. Sakuma for their technical assistance. This work was carried out at the Gene Research Center of Hirosaki University (Japan).
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A. Wang, D. Tan, A. Takahashi, T. Zhong Li, and T. Harada MdERFs, two ethylene-response factors involved in apple fruit ripening J. Exp. Bot., October 1, 2007; 58(13): 3743 - 3748. [Abstract] [Full Text] [PDF] |
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