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Plant Physiol. (1999) 119: 1341-1348
Cloning and Characterization of TPE4A, a
Thiol-Protease Gene Induced during Ovary Senescence and Seed
Germination in Pea1
Manuel Cercós,
Salvador Santamaría, and
Juan Carbonell*
Instituto de Biología Molecular y Celular de Plantas,
Universidad Politécnica de Valencia-Consejo Superior de
Investigaciones Científicas, Camino de Vera 14, 46022 Valencia,
Spain
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ABSTRACT |
A cDNA clone encoding a
thiol-protease (TPE4A) was isolated from senescent ovaries of pea
(Pisum sativum) by reverse transcriptase-polymerase chain reaction. The deduced amino acid sequence of TPE4A has the conserved catalytic amino acids of papain. It is very similar to
VSCYSPROA, a thiol-protease induced during seed germination in common
vetch. TPE4A mRNA levels increase during the senescence of unpollinated pea ovaries and are totally suppressed by treatment with gibberellic acid. In situ hybridization indicated that
TPE4A mRNA distribution in senescent pea ovaries is
different from that of previously reported thiol-proteases induced
during senescence, suggesting the involvement of different proteases in
the mobilization of proteins from senescent pea ovaries.
TPE4A is also induced during the germination of pea
seeds, indicating that a single protease gene can be induced during two
different physiological processes, senescence and germination, both of
which require protein mobilization.
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INTRODUCTION |
Senescence is the last step of plant development, leading to the
death of a plant tissue or organ or the whole plant. There is evidence
to indicate that senescence is a genetically controlled process (Gan
and Amasino, 1997 ; Noodén et al., 1997 ). One of the major events
taking place during the senescence process is the ordered degradation
of cell constituents, and the degradation of proteins is a
characteristic of senescence. Protease genes have been cloned from
several senescent plants (Jones et al., 1995 ; Smart et al., 1995 ; Drake
et al., 1996 ), and thiol-proteases are the most common proteolytic
enzymes induced in senescent plant cells (Granell et al., 1998 ).
The unpollinated pea (Pisum sativum) ovary is a convenient
system in which to study the natural senescence of reproductive organs
in plants. When pollination is prevented, the ovary stops growing about
3 d after anthesis; natural senescence then starts, leading to
ovary death and abscission within 2 or 3 d (Carbonell and
García-Martínez, 1980 ). This senescence process is
accompanied by the loss of sensitivity to GA3
treatments (García-Martínez and Carbonell, 1980 ) and by
an increase in proteolytic activity at neutral pH (Carbonell and
García-Martínez, 1985 ; Carrasco and Carbonell, 1988 ;
Cercós et al., 1992 ). New proteases have been found associated
with senescence in unpollinated pea ovaries (Granell et al., 1992 ;
Cercós and Carbonell, 1993 ; Cercós et al., 1993 ). The
senescence process is prevented when parthenocarpic fruit set is
induced by treatment of the unpollinated ovaries with
GA3 and other plant-growth regulators
(García-Martínez and Carbonell, 1980 ).
Like senescence, seed germination involves the degradation and
remobilization of stored nutrients. Thiol-proteases also play a key
role in this remobilization step (Granell et al., 1998 ). It is not
known whether the same thiol-proteases are involved in senescence and
germination or whether there are different thiol-proteases for each
process. There are few reports addressing this question (Griffiths et
al., 1997 ), and none of them reports a single-copy gene being expressed
in both senescence and germination.
In this study, we isolated and characterized a cDNA clone encoding
TPE4A, a thiol-protease induced during senescence of unpollinated pea
ovaries. The induction of TPE4A transcription during
senescence and its repression after GA3 treatment
were observed by northern-blot analysis and in situ hybridization. We
also detected TPE4A transcription in other organs, including
germinating seeds. We report evidence for a single-copy thiol-protease
gene that is induced in both senescence and seed
germination.
The accession number for the sequence reported in this article is
AJ004958.
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MATERIALS AND METHODS |
Plant Material
Pea (Pisum sativum L. cv Alaska) plants were grown as
described by Carbonell and García-Martínez (1985) , and
ovaries and fruits were collected as described by Cercós et al.
(1992) . After stamens and petals were removed 2 d before anthesis
to avoid pollination, two types of samples were prepared: (a)
presenescent and senescent ovaries, which were untreated and
unpollinated ovaries collected between the day of anthesis and 4 d
later; and (b) young fruits, in which fruit set was induced by
treatment with GA3 on the day of anthesis (d 0)
and fruits were collected between d 1 and 4 after anthesis.
Pea seeds were allowed to imbibe by placing them on top of sterile
cotton swabs previously saturated with either sterile water or 50 µM STS. Seeds were kept in the dark at room temperature and collected after 0, 1, 2, 3, 4, and 6 d. Embryonic axes were removed in samples collected after 3 d of imbibition. Collected samples were stored at 80°C until use.
Cloning Strategy
Two degenerate sets of primers were designed according to
conserved amino acid regions in the sequence of the papain family of
plant thiol proteases. TP4 (5 -TGYGGNAGYTGYTGG-3 ) was a sense degenerate set of oligonucleotides specific for the conserved CGSCW
motif, which includes the catalytic Cys residue. TP7
(5 -NCCCCANGARTT-3 ) was an antisense degenerate set of
oligonucleotides specific for the conserved NSWG motif, which includes
the catalytic Asn residue and a conserved Trp residue. For first-strand
cDNA synthesis, an XSC adaptor (5 -GACTCGAGTCGACATCGAT-3 ;
Frohman et al., 1988 ) was added at the 5 end of the TP7
oligonucleotide, generating the TP7-XSC oligonucleotide.
For first-strand synthesis, 0.1 µg of total RNA from senescent
ovaries collected on d 4 after anthesis was reverse transcribed with 10 units of avian myeloblastosis virus reverse transcriptase (Boehringer Mannheim) and 40 pmol of the TP7-XSC oligonucleotide in the
presence of 10 units of RNase inhibitor (RNA-Guard,
Pharmacia) for 1 h at 37°C. After alkaline hydrolysis
of RNA and purification of the single-stranded DNA with
Qiaex II (Qiagen, Chatsworth, CA), one-tenth of the purified
single-stranded DNA was used for second-strand synthesis and PCR
amplification.
First-strand cDNA was mixed with 10 pmol of TP4 oligonucleotide, 10 nmol of each nucleotide triphosphate, and 1 unit of Taq DNA-polymerase (Pharmacia). The second-strand synthesis reaction was
carried out in a thermocycler (Perkin-Elmer) by incubating the mixture
for 5 min at 94°C, 1 min at 40°C, and 15 min at 72°C. Next, 75 pmol of XSC oligonucleotide, 65 pmol of TP4 oligonucleotide, and 1 unit
of Taq were added and the double-stranded cDNA was PCR
amplified for 40 cycles at 94°C for 1 min, 40°C for 1 min, and
72°C for 1 min. The PCR product was electrophoresed onto a 1% (w/v)
agarose gel, and a single band of about 400 bp was obtained (data not
shown); this band was eluted with Qiaex II and cloned into the pT7-Blue
vector (Novagen, Madison, WI).
To compare the positive clones and group the identical ones into
families, the positions of the T residues in the nucleotide sequences
of the clones were determined. DNA was denatured, annealed with a
vector-specific primer (M13-20), and extended with Klenow fragment at
42°C for 5 min in the presence of 125 µM dCTP, 125 µM dGTP, 6.25 µM dTTP, 250 µM
ddTTP, and 2 µCi of [ -35S]dATP (10 µCi/µL, 1000 Ci/mmol). The mixture was heat denatured and loaded
onto a sequencing gel. Clones with the same T-band pattern were
considered identical.
To generate the complete TPE4A cDNA, the flanking sequences
for the initial PCR product were obtained by PCR. The template was a
cDNA library generated with poly(A+) RNA from
senescent pea ovaries on d 4 after anthesis in UNIZAP-XR vector
(Stratagene) according to the manufacturer's instructions. The 5 side
was obtained by PCR with the T3 primer (specific to the vector) and the
13BR primer (specific for TPE4A; Fig.
1). The 3 end was obtained by PCR with
the T7 primer (specific to the vector) and the 13B primer (specific for
TPE4A; Fig. 1). A single band was observed after each of the
PCR products was loaded onto an agarose gel. The PCR bands were gel
purified, cloned into pT7-Blue, and sequenced.

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| Figure 1.
Nucleotide and deduced amino acid sequences of
TPE4A cDNA. Numbers on the left correspond to the
nucleotide sequence, and numbers on the right correspond to the deduced
amino acid sequence. The protein-coding region is shown in uppercase
letters, and the 5 - and 3 -untranslated regions are shown in lowercase
letters. Boxed sequences correspond to the target sequences for the
oligonucleotides used in the PCR cloning experiments; the target amino
acid sequences for the two degenerated oligonucleotides, TP4 and TP7,
are also included in the boxes. Arrows next to the oligonucleotide
names indicate the oligonucleotide direction (5 to 3 ). The proposed
boundaries between the signal peptide, prosequence, and mature peptide
are indicated by arrows. The boundary between the signal peptide and
the prosequence was established based on the hydrophobicity plot of the
protein (data not shown) and comparison with other protease sequences.
Several motifs are highlighted: #, amino acids forming the ERFNIN
motif; @, putative N-glycosylation site; *, essential
catalytic amino acids; &, other conserved amino acid residues in the
active site; and =, Cys residues involved in disulfide bridges. The ER
retention signal (KDEL) is double underlined, the putative
polyadenylation signal is single underlined, and the two
HindIII restriction sites used for the genomic
Southern-blot analysis are highlighted.
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The entire TPE4A cDNA was generated by PCR using the same
cDNA library as the template and the two specific primers for
TPE4A, TPE4A-5 and TPE4A-3 (Fig. 1). The product was
cloned in pT7-Blue as described above. To minimize the possibility of
PCR artifacts, three independent PCR reactions were performed, and
three positive clones from each of the reactions were sequenced. No
differences were found between the nine sequenced clones with the
exception that one of the three products was shorter (data not shown).
DNA Sequencing
Automatic DNA sequencing was carried out (PRISM 377, Applied
Biosystems). Primers specific to the vector were used in the initial
sequencing runs, and new primers specific to the insert sequences were
synthesized after each run. Both DNA strands were completely sequenced.
To minimize the possibility of PCR errors, nine TPE4A clones
corresponding to three independent PCR reactions were completely
sequenced. Sequences were analyzed with the University of Wisconsin
Genetics Computer Group software package (Devereux et al., 1984 ).
Genomic Southern-Blot Analysis
Genomic DNA was isolated from pea leaves as described by
Dellaporta et al. (1983) . Twenty-microgram aliquots of genomic DNA were
digested with the appropriate restriction enzymes and electrophoresed on a 0.6% (w/v) agarose gel in 1× TAE buffer (40 mM
Tris-acetate and 1 mM EDTA, pH 8.0) as described by
Sambrook et al. (1989) . The gel was blotted onto Hybond N membranes
(Amersham) according to the manufacturer's instructions and hybridized
with the HindIII-HindIII fragment of the
TPE4A cDNA (Fig. 1) according to the protocol described by
Church and Gilbert (1984) .
RNA Isolation and Northern-Blot Analysis
Total RNA was isolated from pea ovaries using the RNeasy Plant
Mini Kit (Qiagen) according to the manufacturer's instructions. Total
RNA from seeds that had imbibed was extracted according to the
procedure described by Bugos et al. (1995) .
Ten-microgram aliquots of total RNA were electrophoresed in
formaldehyde-agarose gels as described by Sambrook et al. (1989) , blotted onto Hybond N membranes (Amersham) according to the
manufacturer's instructions, and hybridized in the same conditions
described above for Southern-blot analysis.
In Situ Hybridization
Localization of the TPE4A mRNA was determined by in
situ hybridization as described by Jackson (1992) . To generate the
riboprobes, the TPE4A cDNA insert was subcloned in pBluescript
SK (Stratagene). Antisense probes and sense
control probes were generated by in vitro transcription with T7 and T3
RNA polymerases, respectively. Probes were labeled with digoxigenin and
immunodetected with an alkaline-phosphatase-conjugated anti-digoxigenin
antibody. Alkaline phosphatase was detected by the
5-bromo-4-chloro-3-indolyl phosphate-nitroblue tetrazolium procedure. A
microscope (Diaphot-TMD, Nikon) was used for sample visualization under
phase contrast and photography.
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RESULTS |
Reverse Transcriptase-PCR Cloning of a New Senescence-Induced
Thiol-Protease
A single reverse transcriptase-PCR band was obtained by reverse
transcription with the TP7-XSC oligonucleotide and PCR with the TP4 and
XSC oligonucleotides. Because several thiol-protease genes should be
expressed in senescing pea ovaries, the PCR band should be a mixture of
different cDNAs (actually, sequence alignments showed that the spacing
between the two conserved sequences used for our oligonucleotide design
is conserved in most of the plant thiol-proteases). To separate the
different cDNA molecules present in the PCR band, 50 clones with insert
were subjected to T-sequencing reactions. By comparing the T-track
patterns, we were able to group the identical clones and found 11 different cDNA classes. One representative clone for each class was
sequenced, and only two of them (classes 7 and 10) were similar to
thiol-proteases. Clone 7 was identical to tpp, a previously reported
thiol-protease cDNA from senescing pea ovaries (Granell et al., 1992 ).
Clone 10 was a new thiol-protease cDNA expressed in senescing pea
ovaries that we named TPE4A. It was different from tpp, with
greatest similarity (90.8% at the protein level) to VSCYSPROA (Fig.
2), a thiol-protease cDNA isolated from
germinating seeds of common vetch (Becker et al., 1997 ).

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| Figure 2.
Sequence similarities between TPE4A and other Cys
proteases. The alignment was generated using the PileUp program of the
Genetics Computer Group package. The compared proteases are: EP-C1 from
bean (Ogushi et al., 1992 ); SEN102 (Valpuesta et al., 1995 ) from
daylily; SEN11 (Guerrero et al., 1998 ) from daylily; SH-EP from
Vigna mungo (Akasofu et al., 1990 ); vicilin peptide
hydrolase from mung bean (VICILIN-PE; Lee et al., 1997 ); and VSCYSPROA
from vetch (Becker et al., 1998).
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Because both the TP4 and TP7 oligonucleotides were directed to internal
conserved sequences of thiol-proteases, the cloned fragment of
TPE4A was internal to the gene (Fig. 1). To obtain the
complete cDNA clone, the remaining sequences were generated from a cDNA
library by PCR using TPE4A-specific and vector-specific oligonucleotides. Because the TPE4A-specific
oligonucleotides were directed to a nonconserved region of the
TPE4A cDNA, these bands were expected to correspond to
single cDNA species. After sequencing these PCR products, we found a
perfect match of the overlapping sequences with the initial PCR
fragment. Additionally, the new fragments aligned at the corresponding
parts of the VSCYSPROA sequence. The entire TPE4A cDNA was
obtained by PCR using oligonucleotides specific for the 5 and 3 ends.
Molecular Characterization of TPE4A
The isolated cDNA clone for TPE4A had an insert 1270 bp
long, with an open reading frame encoding a 361-amino acid polypeptide (Fig. 1). Comparison of the deduced amino acid sequence with
protein-sequence databases indicated homology with several plant
thiol-protease genes (Fig. 2), especially with VSCYSPROA from common
vetch (Becker et al., 1997 ), vicilin peptide hydrolase from mung
bean (Lee et al., 1997 ), SH-EP from Vigna mungo
(Akasofu et al., 1990 ), EP-C1 from bean (Ogushi et al., 1992 ), and
SEN11 (Guerrero et al., 1998 ) and SEN102 (Valpuesta et al., 1995 ) from
daylily. The putative thiol-protease activity of the TPE4A protein is
supported by the conservation of the three catalytic amino acids of
papain, Cys-154, His-298, and Asn-310 (Kamphuis et al., 1985 ), at
positions 153, 288, and 309, respectively (Fig. 1). Other conserved
amino acids involved in the catalytic activity of papain and some Cys
residues forming disulfide bridges are also conserved in TPE4A (Fig.
1).
A putative signal sequence was found at the protein N terminus
according to the rules proposed by Von Heijne (1983) , with the peptide
bond between Ala-20 and Thr-21 being the putative cleavage site with
the highest probability. Downstream of the putative signal peptide, the
consensus sequence of the ERFNIN motif
(EX3RX3FX2NX3I/VX3N;
Karrer et al., 1993 ) was found. The ERFNIN sequence has been described
as a part of the proenzyme that is involved in the inhibition of the
protease activity before processing (Karrer et al., 1993 ). The presence
of this motif in TPE4A, as well as the comparison with the sequences of
similar thiol-proteases, suggests that TPE4A is synthesized as a
proenzyme and is processed before becoming an active enzyme. After
alignment of the TPE4A amino acid sequence with the sequences of
previously reported plant thiol-proteases, the putative position of the
N-terminal residue in the mature protein was proposed to be Val-129
(Fig. 1). This agrees with the observation that in all of the
ERFNIN-containing thiol-proteases, the seventh amino acid residue of
the mature protein is Trp (Karrer et al., 1993 ).
Comparison of the TPE4A nucleotide sequence with the
sequences of similar thiol-proteases suggested that the
TPE4A cDNA was not full length, because only five
nucleotides of the leader region were present in the clone (Fig. 1). Of
the three independent PCR reactions carried out during TPE4A
cloning, two of them started at the same point and the other was even
shorter; this could suggest that a high degree of secondary structure
and/or some kind of instability of the mRNA leader region would make
the synthesis of a full-length cDNA difficult. However, the leader
region should not be very long, because northern-blot analyses in
ovaries and other tissues showed a single band that was smaller than
the rRNA bands (1.8 kb) (data not shown).
Genomic Southern-blot analysis (Fig. 3)
indicated that TPE4A is encoded by a single-copy gene. Among the
enzymes used for the restriction analysis, EcoRI,
XbaI, and BamHI did not cut into the cDNA insert,
whereas HindIII cut twice (Fig. 1). A single band of
approximately 6 kb was found after XbaI digestion,
suggesting that TPE4A is encoded by a single-copy gene. No band was
detected after BamHI digestion, which could mean that the
BamHI digestion product containing the TPE4A gene
was longer than the sizes resolved in the gel. This was confirmed by
the double-digestion results (Fig. 3A). The two bands formed in the
EcoRI digestion indicated the presence of an
EcoRI site in an intron. The difference in length of the
HindIII fragment in the genomic DNA (about 1.5 kb; Fig. 3A)
and in the cDNA clone (773 bp; Fig. 1) confirmed the presence of one or
more introns between the HindIII sites, with a total intron
length of about 700 bp. Figure 3B represents a proposed restriction map
for the genomic DNA region containing the TPE4A gene.

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| Figure 3.
TPE4A is encoded by a single-copy gene. A, Genomic
Southern-blot analysis showing that TPE4A is encoded by a single gene.
Ten micrograms of pea genomic DNA was digested with
EcoRI (E), XbaI (X),
HindIII (H), and BamHI (B), and double
digestions with combinations of these enzymes were also performed. The
HindIII fragment of the cDNA clone was used as the
probe. B, Deduced genomic organization of the TPE4A
gene. Thick black lines represent the interrupted open reading frame,
and thin lines represent the putative intron and the flanking regions
of the gene. For simplicity, a single intron bearing the
EcoRI site is shown.
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Expression of the TPE4A Gene
Northern-blot analysis of unpollinated pea ovaries indicated the
induction of TPE4A transcription after the onset of
senescence on d 2 after anthesis in nontreated ovaries (Fig.
4). No hybridization signal was detected
in GA3-treated ovaries, whereas a slight signal was detected in presenescent ovaries, suggesting a repression of the
basal expression levels after the hormonal treatment.

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| Figure 4.
TPE4A expression is induced during pea ovary
senescence. Northern-blot analysis showing the progressive accumulation
of the TPE4A transcript in presenescent (d 0, 1, and 2)
and senescent (d 3 and 4) nontreated pea ovaries ( GA) and the
repression of TPE4A expression in
GA3-treated ovaries (+GA). dpa, Days postanthesis.
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The distribution of the TPE4A transcripts in senescent pea
ovaries was studied by in situ hybridization (Fig.
5). Using the antisense TPE4A
RNA as the probe, we detected the presence of the TPE4A
transcripts in the endocarp and, at lower amounts, in the outer cell
layers of the ovule (Fig. 5, A, C, E, and G). The TPE4A
transcript distribution was not uniform along the ovary endocarp. The
concentration was highest in the endocarp area next to the ovule (Fig.
5, C and E) and almost undetectable at the opposite end of the
transverse section (Fig. 5I), and an intermediate concentration was
detected between these two areas (Fig. 5G). No hybridization occurred
with the sense TPE4A RNA as a control probe (Fig. 5, B, D,
F, and H). Some labeling was also detected associated with the cell
walls of the mesocarp cells (Fig. 5E), but this could also be detected
with the control probe (Fig. 5F), suggesting that it was not specific.
This nonspecific labeling was also detected in the mesocarp cells of
developing fruits on d 4 after anthesis (Fig. 5, K and L). No labeling
was detected in the endocarp or ovules in developing fruits (Fig. 5, K
and L). Northern-blot analysis indicated a complete suppression of TPE4A transcripts in developing fruits (Fig. 4); therefore,
the detection of some labeling associated with the mesocarp cell
walls in histological sections of developing fruits can be
considered to be nonspecific.

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| Figure 5.
Detection of tissue-specific TPE4A
expression by in situ hybridization. A through J, Cross-sections of
senescent pea ovaries (d 4 after anthesis) hybridized with the
TPE4A antisense riboprobe (A, C, E, G, and I) and the
sense control probe (B, D, F, H, and J). C and D, Ovule and surrounding
area of the sections shown in A and B at higher magnification; G, H, I,
and J, other parts of the same sections. E and F, Detail of the ovule
and surrounding endocarp area of different sections. K and L,
Cross-section of the ovule and surrounding endocarp area of developing
pea fruits (GA3-treated ovaries on d 4 after anthesis)
hybridized with the TPE4A antisense riboprobe (K) and
the sense control probe (L). Hybridization is indicated by the dark
staining in the endocarp (e) area surrounding the ovule (o) and, at
lower levels, in the outer cell layers of the ovule in senescent
ovaries. m, Mesocarp; ex, exocarp.
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The TPE4A mRNA was also detected by northern-blot analysis
in germinating pea seeds. When seeds were allowed to imbibe in water,
the TPE4A band and another band of approximately 2.8 kb were
induced after 3 d (Fig. 6); when
seeds were allowed to imbibe in the presence of STS, these mRNA bands
were not detected. Because Southern-blot analysis detected only one
copy of the TPE4A gene in the pea genome (Fig. 3), and
additional experiments conducted at lower-stringency conditions did not
show any additional bands (data not shown), the 2.8-kb band could be
either a cross-reacting mRNA expressed only in seeds or an artifact
from the tissue- and RNA-extraction protocol.

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| Figure 6.
TPE4A expression is also induced during seed
germination. Northern-blot analysis showing the accumulation of the
TPE4A transcript (lower band) and another cross-reacting
transcript (about 2.8 kb) during the imbibition of pea seeds in water
( STS) and STS (+STS). dai, Days after imbibition.
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Northern-blot analysis of total RNA from different tissues of the pea
plant showed the presence of the TPE4A transcript in the
stem and the tendrils but not in the roots and the shoot apex. Expression of TPE4A was detected in petals, increasing in
abundance during senescence (petals become senescent after anthesis).
No signal was detected in young, mature, or senescing pea leaves. (Fig.
7).

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| Figure 7.
Expression of the TPE4A gene in
different tissues of the pea plant. Northern-blot analysis showing the
accumulation of the TPE4A transcript in leaves. Lane 1, Young leaves; lane 2, mature leaves; lane 3, senescent leaves; lane A,
apex; lane S, stem; lane T, tendrils; lane R, roots. Petal lanes are as
follows: d 1, 1 d before anthesis; d 0, day of anthesis; and d+1,
1 d after anthesis, when the petals were senescent.
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DISCUSSION |
We have cloned a thiol-protease cDNA (TPE4A) from
senescing pea ovaries by reverse transcriptase-PCR using two degenerate primers derived from consensus sequences found in all plant
thiol-proteases of the so-called papain family. With the two degenerate
primers we used, only two protease genes were amplified:
TPE4A and tpp, a previously reported
thiol-protease gene induced in senescent pea ovaries (Granell et al.,
1992 ). Because these two primers correspond to a subset of the possible
primers encoding the target-protein sequences, the use of more primer
combinations would probably allow the cloning of more
senescence-related thiol-protease cDNAs.
TPE4A can be classified as a papain family member according to sequence
similarity and the conserved positions of the amino acids forming the
active site (Figs. 1 and 2). According to Karrer et al. (1993) , TPE4A
is a member of the ERFNIN-containing thiol-proteases (cathepsin L- and
cathepsin H-like thiol-proteases), in that an ERFNIN motif can be found
in its prosequence. All of the proteases of this family share several
common structural properties that make them different from the
cathepsin B-like thiol-proteases (Karrer et al., 1993 ). We have used
all of these features to confirm the protein alignments in Figure 2 and
the conserved features highlighted in Figure 1. The first 20 amino
acids of the TPE4A deduced amino acid sequence can be considered a
signal peptide according to the rules of Von Heijne (1983) , suggesting
that TPE4A enters the secretory pathway cotranslationally.
The deduced amino acid sequence of TPE4A contains a putative
ER-retention signal in the C terminus (KDEL; Bednarek and Raikhel, 1992 ). Several plant thiol-proteases contain a similar signal at the C
terminus (Fig. 2). The presence of a KDEL tetrapeptide at the C
terminus of a fusion protein is in some cases sufficient for the
retention of the protein in the ER (Bednarek and Raikhel, 1992 ). As
proposed by Valpuesta et al. (1995) and Guerrero et al. (1998) , a
protease in the ER would be involved in homeostatic controls rather
than protein mobilization, so further translocation to a different cell
compartment is expected for a protease involved in the mobilization of
storage proteins.
Studies carried out with VSCYSPROA, the vetch homolog of TPE4A (Becker
et al., 1997 ), showed that the purified mature protein lacks the KDEL,
indicating that it is removed after translation. It was proposed that
VSCYSPROA is retained in the ER until it is needed for the germination
process; the KDEL motif would then be removed and the protease
translocated to the protein bodies. This would explain the time gap
found between the transcription of the protease gene and proteolytic
activity (Becker et al., 1997 ). Something similar could happen to TPE4A
during the germination of pea seeds. The increase in the
TPE4A mRNA amount 6 d after imbibition (Fig. 6) was not
correlated with an increase in proteolytic activity in seed extracts
(data not shown), suggesting that there is also a time gap between
transcription of the TPE4A gene and the proteolytic activity
in pea seeds. However, during ovary senescence no time gap has been
found between transcription and proteolytic activities, suggesting that
the ER-retention step would be unnecessary in the senescent ovaries.
Further work concerning the changes in the subcellular localization of
the TPE4A protein in senescent pea ovaries will be needed to clarify
this point.
TPE4A is similar to several plant thiol-proteases (Fig. 2), with the
closest similarity found with VSCYSPROA (Becker et al., 1997 ). The
similarity between TPE4A and VSCYSPROA deduced amino acid sequences was
78% in the signal peptide, 91% in the prosequence, and 92% in the
mature peptide. This close similarity is conserved even in sequences
not shared with other similar thiol-proteases (Fig. 2). These data
suggest that TPE4A and VSCYSPROA could be homolog
genes. If this is true, they should have the same physiological functions, because pea and vetch belong to the same plant family. Furthermore, both proteases are expressed in the same tissues of the
corresponding plants (compare Fig. 6 and Becker et al., 1997 ).
Because both senescence and germination processes are characterized by
nutrient remobilization, thiol-proteases play a key role in both
processes (Granell et al., 1998 ); however, there is no report
demonstrating that a single protease gene can be induced in both
processes. Griffiths et al. (1997) isolated a vacuolar thiol-protease
(See1) from senescent maize leaves and found that it is very similar
(99.3% in the cDNA sequence) to CCP2, a previously known
thiol-protease associated with the germination of maize seeds. It was
difficult to conclude whether See1 and CCP2 corresponded to different
genes or to alleles of the same gene. These investigators also found
two copies of the gene by Southern-blot and restriction fragment length
polymorphism analyses (Griffiths et al., 1997 ), and they observed
induction during both senescence and germination using northern-blot
analysis with the See1 probe. However, because of this similarity, both
mRNAs could be detected simultaneously in the northern-blot
experiments, so it was not possible to conclude whether the two genes
are expressed in both senescence and germination or if each gene is
specific to one of the two processes. Because TPE4A is a
single-copy gene (Fig. 3) and its expression was detected by
northern-blot analysis in both ovary senescence (Figs. 4 and 5) and
seed germination (Fig. 6), we conclude that this gene is expressed in
both processes.
TPE4A accumulation in germinating seeds was suppressed when the seeds
were allowed to imbibe in the presence of 50 µM STS, a
known inhibitor of ethylene action (Davies et al., 1990 ). This suggests
the possibility that, at least during seed germination, TPE4A transcription could be induced by ethylene. However,
in the presence of STS, seed germination was slower during the first days of imbibition and seedling growth apparently stopped at
approximately d 6. Therefore, it is not possible with our data to
determine whether the observed repression of TPE4A
expression was caused by the STS inhibition of ethylene action or by
altered germination. In germinating cereal seeds,
GA3 induces the transcription of thiol-proteases
(Mikkonen et al., 1996 ). In legume seeds, there is a different control
of protease expression; Cervantes et al. (1994) reported the first
evidence of an ethylene-induced thiol-protease gene associated with the
germination of chickpea seeds. We also found a possible induction of
the TPE4A gene by ethylene; in addition, tpp,
another thiol-protease gene induced in senescent pea ovaries, was also
expressed during seed germination in pea (data not shown) and was
repressed when seeds were allowed to imbibe in STS. It could be a
general rule that in cereals germination-related thiol-protease genes
are induced by GA3, whereas during the
germination of legume seeds, they are induced by ethylene.
The data in Figure 4 indicate that TPE4A transcription is
completely suppressed after treatment of the ovaries with
GA3. Even the low background expression detected
in presenescent ovaries is suppressed by GA3.
These data suggest that TPE4A transcription is not
controlled by GA3 in the same way as
tpp transcription (greatly decreased but not completely
suppressed by GA3; Granell et al., 1992 ). In
addition, the TPE4A mRNA level increased from d 3 to 4, whereas tpp had a maximum level on d 3 and then decreased. Comparing
the temporal patterns of gene expression and the evolution of proteases
(Cercós and Carbonell, 1993 ; Cercós et al., 1993 ) with
proteolytic activity (Cercós et al., 1992 ), we conclude that
TPE4A evolution is more closely related to proteolytic
activity changes than is tpp evolution.
The spatial distribution of TPE4A expression in senescent
pea ovaries is also different from that of tpp (Granell et
al., 1992 ) and a senescence-induced protease purified from senescent pea ovaries (Cercós et al., 1993 ). By combining the results found in the histological localization of the three known proteases induced
in senescent pea ovaries, we hypothesize that the action of different
proteases is needed for the proper mobilization of proteins from the
senescent ovaries to the growing parts of the pea plant.
 |
FOOTNOTES |
1
This work was supported by grant no. GV-3208/95
from Generalitat Valenciana and by grant no. PB95-0029-C02-01 from
Dirección General de Investigación Científica y
Técnica, Spain.
*
Corresponding author; e-mail jcarbon{at}ibmcp.upv.es; fax
34-96-387-7859.
Received September 14, 1998;
accepted January 11, 1999.
 |
ABBREVIATIONS |
Abbreviation:
STS, silver thiosulfate.
 |
ACKNOWLEDGMENTS |
We thank Dr. Antonio Granell for helpful suggestions. We also
thank Dr. E. Grau for help with automatic DNA sequencing, Dr. M.D.
Gómez for help with the in situ hybridization experiments, and
Donnellan-Barraclough for help with the English language.
 |
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