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Plant Physiol. (1999) 120: 1193-1204
Determination of the Motif Responsible for Interaction between
the Rice APETALA1/AGAMOUS-LIKE9 Family Proteins Using a Yeast
Two-Hybrid System1
Yong-Hwan Moon,
Hong-Gyu Kang,
Ji-Young Jung,
Jong-Seong Jeon,
Soon-Kee Sung, and
Gynheung An*
Department of Life Science, Pohang University of Science and
Technology, Pohang 790-784, Republic of Korea
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ABSTRACT |
A MADS family gene,
OsMADS6, was isolated from a rice (Oryza
sativa L.) young flower cDNA library using
OsAMDS1 as a probe. With this clone, various MADS box
genes that encode for protein-to-protein interaction partners of the
OsMADS6 protein were isolated by the yeast two-hybrid screening method.
On the basis of sequence homology, OsMADS6 and the
selected partners can be classified in the
APETALA1/AGAMOUS-LIKE9 (AP1/AGL9)
family. One of the interaction partners,
OsMADS14, was selected for further study. Both genes
began expression at early stages of flower development, and their
expression was extended into the later stages. In mature flowers the
OsMADS6 transcript was detectable in lodicules and also
weakly in sterile lemmas and carpels, whereas the
OsMADS14 transcript was detectable in sterile lemmas,
paleas/lemmas, stamens, and carpels. Using the yeast two-hybrid system,
we demonstrated that the region containing of the 109th to 137th amino
acid residues of OsMADS6 is indispensable in the interaction with
OsMADS14. Site-directed mutation analysis revealed that the four
periodical leucine residues within the region are essential for this
interaction. Furthermore, it was shown that the 14 amino acid residues
located immediately downstream of the K domain enhance the interaction,
and that the two leucine residues within this region play an important
role in that enhancement.
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INTRODUCTION |
The vegetative-to-reproductive transition is an important event in
a plant's development. Upon initiation of the reproductive phase, the
development of the floral meristem is initiated by floral meristem
identity genes such as LFY (LEAFY) and
AP1 (APETALA1) in Arabidopsis (Mandel et al.,
1992 ; Weigel et al., 1992 ; Hempel et al., 1997 ). At a later step, the
fate of floral organ primordia is specified by three classes of
homeotic genes (for review, see Weigel and Meyerowitz, 1994 ):
AP1, AG (AGAMOUS), PI
(PISTILATA), and AP3 in Arabidopsis (Yanofsky et
al., 1990 ; Jack et al., 1992 ; Mandel et al., 1992 ; Goto and Meyerowitz,
1994 ), and SQUA (SQUAMOSA), PLE
(PLENA), GLO (GLOBOSA), and
DEF (DEFICIENS) in snapdragon (Sommer
et al., 1990 ; Huijser et al., 1992 ; Tröbner et al., 1992 ; Bradley
et al., 1993 ). These homeotic genes belong to the MADS-domain protein
gene family. MADS box genes encode a family of highly conserved
transcription factors that participate in signal transduction and
developmental control in plants, animals, yeast, and fungi.
In addition to the three classes of organ identity genes in plants,
there are a large number of other MADS box genes whose function is less
well defined. In Arabidopsis at least 17 AGL (AG-LIKE) genes have been isolated (Ma et al., 1991 ; Mandel
and Yanofsky, 1995 ; Rounsley et al., 1995 ). It was revealed that some of these genes are floral organ specific and appear to be involved in
controlling floral organ initiation and development. For example, AGL2 and AGL4 are first expressed very early in
flower development (after the floral meristem has emerged from the
inflorescence meristem but before any of the organ primordia emerge),
suggesting that AGL2 and AGL4 play important
roles in the intermediate step between inflorescence initiation and
floral organ initiation (Flanagan and Ma, 1994 ; Savidge et al., 1995 ).
In addition to flower development, several MADS box genes are involved
in the control of ovule and seed development, vegetative growth, root
development, embryogenesis, or symbiotic induction (Mandel et al.,
1994 ; Angenent et al., 1995 ; Heard and Dunn, 1995 ; Flanagan et al.,
1996 ; Perry et al., 1996 ; Buchner and Boutin, 1998 ; Zhang and Forde,
1998 ).
Plant MADS box proteins consist of a MADS box domain, an I region, a K
domain, and a C-terminal region. The conserved MADS box domain is
required for sequence-specific DNA binding and dimerization (Mizukami
et al., 1996 ; Riechmann et al., 1996a , 1996b ; West et al.,
1998). The MADS box domains bind to the consensus DNA sequence, the CArG motif (Huang et al., 1993 , 1995 ; Tilly et al., 1998 ). In
AP3 and PI the MADS box and the I region are
needed for nuclear localization of the proteins (McGonigle et al.,
1996 ). The K domain is the second conserved region, carrying 65 to 70 amino acid residues and located in the middle of the MADS box proteins.
The K domain was named due to its structural resemblance to the
coiled-coil domain of keratin, and has been suggested to be involved
in protein-to-protein interactions (Ma et al., 1991 ; Pnueli et
al., 1991 ; Theissen et al., 1995 ). The C-terminal region is rich in
acidic amino acids, which are characteristic of transactivation
domains. Using the yeast two-hybrid system, we recently demonstrated
that OsMADS16, a rice (Oryza sativa L.) AP3 homolog,
contains a transcription activation domain in the C-terminal region of
the protein (Moon et al., 1999 ).
It has been demonstrated that the K domain is required for interactions
between MADS box proteins (Davies et al., 1996 ; Fan et al., 1997 ). In
experiments using the yeast two-hybrid system, GLO and DEF, the B class
proteins of snapdragon, specifically selected each other as a partner
in the protein-to-protein interaction, and the K domain played an
important role in the interaction (Davies et al., 1996 ). Furthermore,
in studies using the same system, AG interacted with AGL2, AGL4, AGL6,
and AGL9 (Fan et al., 1997 ). In that study it was demonstrated that the
K domain is necessary in the protein-to-protein interaction. These
results indicate that MADS box proteins cooperate with other MADS box
proteins in a K-domain-mediated interaction to carry out their
functions.
Almost all of our knowledge about the interaction between MADS box
proteins has been obtained from the two dicots Arabidopsis and
snapdragon. Although many MADS box proteins were isolated from
monocots, including maize, sorghum, orchid, and rice (Lu et al., 1993 ;
Schmidt et al., 1993 ; Chung et al., 1995 ; Kang et al., 1995 , 1997 ; Mena
et al., 1995 ; Montag et al., 1995 ; Greco et al., 1997 ; Kang and An,
1997 ), the interaction between the MADS box proteins has not been
elucidated. We previously reported the isolation of OsMADS1,
a rice MADS box gene that exhibited the highest homology with
AGL2 (Chung et al., 1994 ). It was demonstrated that ectopic
expression of the OsMADS1 gene in homologous and heterologous plants resulted in early flowering, suggesting that the
rice MADS gene is involved in flower induction (Chung et
al., 1994 ). In the present study, we report the isolation of a rice AP1/AGL9 family gene, OsMADS6, by screening a
young flower cDNA library from rice using OsMADS1 as a
probe. With this gene we isolated the protein-to-protein interaction
partners by the yeast two-hybrid system. We also investigated the motif
responsible for the interaction between MADS box proteins.
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MATERIALS AND METHODS |
Library Screening and Sequence Analysis
The expression cDNA libraries were constructed from mRNA isolated
from young rice (Oryza sativa L.) panicles (less than 2 cm
height) using Uni-ZAP XR and HybriZAP vectors (Stratagene; Moon et al.,
1999 ). Total cDNAs of a phagemid form were obtained by the mass in vivo
excision method. Hybridization was performed with
105 plaques using a labeled probe prepared from
the OsMADS1 coding region. The cDNA clones were rescued by
in vivo excision using a helper phage (ExAssist, Stratagene).
Double-stranded DNA was used as a template for DNA sequence analysis
following the manufacturer's instructions (Thermo Sequnase cycle
sequencing kit, Amersham). Amino acid sequence homology was compared
using the BLASTX alignment program (Altschul et al., 1997 ).
Plasmid Construction
The binding domain vector pBDGAL4 and the activation domain vector
pADGAL4 were purchased from Stratagene. The sequences containing a
portion of OsMADS1, OsMADS3, OsMADS4,
OsMADS5, OsMADS6, OsMADS7, OsMADS8, OsMADS14, OsMADS15,
OsMADS17, and OsMADS18 were generated by PCR. DNA
sequences encoding the following amino acid residues were amplified: 85 to 257 in OsMADS1 (OsMADS1-KC), 87 to 236 in OsMADS3 (OsMADS3-KC), 84 to 210 in OsMADS4 (OsMADS4-KC), 89 to 225 in OsMADS5 (OsMADS5-KC), 1 to
90 in OsMADS6 (OsMADS6-MI), 1 to 170 in OsMADS6 (OsMADS6-MIKC14), 86 to
156 in OsMADS6 (OsMADS6-K), 86 to 170 in OsMADS6 (OsMADS6-KC14), 86 to
250 in OsMADS6 (OsMADS6-KC), 90 to 249 in OsMADS7 (OsMADS7-KC),
90 to 248 in OsMADS8 (OsMADS8-KC), 1 to 90 in OsMADS14 (OsMADS14-MI), 1 to 172 in OsMADS14 (OsMADS14-MIKC14), 90 to 172 in OsMADS14
(OsMADS14-KC14), 90 to 246 in OsMADS14 (OsMADS14-KC), and the K
domain and C region of OsMADS15 (OsMADS15-KC), OsMADS17 (OsMADS17-KC),
and OsMADS18 (OsMADS18-KC). Regions containing amino acids 86 to 110 (OsMADS6-KI), 109 to 137 (OsMADS6-KII), 138 to 170 (OsMADS6-KIII), and
109 to 170 (OsMADS6-KII+KIII) of OsMADS6 were also amplified by PCR.
Replacement mutants in the K box region of OsMADS6 were generated by
PCR as follows: Leu-110 with Ser and Leu-118 with Arg in the KII
fragment
(OsMADS6-KIIS110R118);
Leu-126 with Arg and Leu-134 with Arg in the KII fragment
(OsMADS6-KIIR126R134);
Leu-110 with Ser and Leu-118 with Arg in the KII and KIII fragments
(OsMADS6-KIIS110R118+KIII); Leu-159 with Arg and Leu-166 with Arg in the KII and KIII fragments (OsMADS6-KII+KIIIR159R
166); and Leu-110 with Ser, Leu-118 with Arg,
Leu-159 with Arg, and Leu-166 with Arg of the KII and KIII fragments
(OsMADS6-KIIS110R118
+KIIIR159R 166). For all
constructs, the 5 EcoRI site and the 3 SalI
site were introduced by PCR. The PCR profile used was 1 min at 95°C,
1 min at 57°C, and 1.5 min at 72°C for a total of 40 cycles. The
PCR products were digested with EcoRI and SalI,
ligated to pBDGAL4 or pADGAL4, and transformed into appropriate hosts.
The sequences of all inserts were determined to confirm the proper
fusion of the constructs.
Yeast Two-Hybrid Screening
The yeast (Saccharomyces cereviseae) strain
YRG-2 (Mat , ura3-52,
his3-200, ade2-101,
lys2-801, trp1-901,
leu2-3, 112,
gal4-542, gal80-538,
LYS::UASGAL1-TATAGAL1-HIS3,
URA3::UASGAL4
17mers(x3)-TATACYC1-lacZ), was purchased from Stratagene. YRG-2 was transformed with
pBD/OsMADS6-KC14, the binding domain plasmid containing the K
domain and 14 amino acid residues of the C-terminal region of OsMADS6,
using a modified lithium acetate method (Gietz et al., 1992 ). The
transformants were tested for imidazoleglycerol-phosphate
dehydratase (HIS3) reporter gene expression and found
not to express this gene, as indicated by the absence of growth on a
medium lacking His.
The strain was transformed with 100 µg of plasmid DNA of the HybriZAP
(Stratagene) cDNA library, along with 3 mg of salmon-sperm carrier DNA, using the lithium acetate method. The transformants were
plated on SD (synthetic dropout) medium lacking Trp, Leu, and His, and
containing 1 mM 3-aminotriazole (SD-Trp-Leu-His+3-AT; Kaiser et al., 1994 ). Approximately 1.4 × 106 transformants were obtained, as estimated
based on the number of transformants grown on the SD-Trp-Leu plate. The
59 colonies that grew on the SD-Trp-Leu-His+3-AT plates after 5 d
were subsequently transferred onto the filter paper on the
SD-Trp-Leu-His plate and incubated for 1 d. The
-galactosidase activity was measured by filter assay according
to the method of Breeden and Nasmyth (1985) . The colonies that turned
blue in less than 6 h were selected for isolation of DNA, and
were then retransferred into the YRG-2 yeast strain
containing pBDGAL4 or pBD/OsMADS6-KC14. Plasmid DNA was recovered from
yeast according to the method of Hoffman and Winston (1987) and
transformed into Escherichia coli strain XL-1-Blue (Stratagene) by electroporation.
Isolation of the 5 Region of the OsMADS14 cDNA
The 5 region of the OsMADS14 cDNA was isolated by PCR using the
T3 primer (5 -AATTAACCCTCACTAAAGGG-3 ) and the OsMADS14
gene-specific primer (5 -ATGGACTCGAGCATTAGTTGG-3 ) located within the K
domain. The template was total cDNA in vivo excised from the
Uni-ZAP (Stratagene) cDNA library. The amplified fragment was
cloned into pBlueScript II KS(+) (Stratagene).
DNA and RNA Blot Analyses
Genomic DNA was prepared from 2-weak-old rice seedlings according
to the protocol of Shure et al. (1983) . DNAs (10 µg) were digested
with EcoRI, HindIII, or PstI,
subjected to electrophoresis in a 0.8% (w/v) agarose gel, and then
blotted onto a Hybond-N+ filter (Amersham). The filter was
prehybridized, hybridized, and washed according to the method of Moon
et al. (1999) .
Total RNA was isolated (TRI reagent, Molecular Research Center,
Cincinnati) from young flowers with a panicle size of 1 to 5 cm,
flowers at the early vacuolated pollen stage, flowers at the late
vacuolated pollen stage, leaves, roots, lodicules, sterile lemmas,
paleas/lemmas, stamens, and carpels. Total RNA (20 µg) was
fractionated on a 1.3% (w/v) agarose gel as described previously (Sambrook et al., 1989 ). After RNA transfer onto a nylon membrane, the
blots were prehybridized, hybridized, and washed according to the
method of Moon et al. (1999) .
The OsMADS6-specific probe (296-bp fragment between
nucleotides 748 and 1043) and the OsMADS14-specific probe
(626-bp fragment between nucleotides 730 and 1355) were labeled by the
random priming method (Amersham).
Quantitative Assay of -Galactosidase Activity
Mid to late exponential-phase yeast cells were collected and
resuspended in Z buffer (Miller, 1972 ). The cells were assayed for
-galactosidase activity as described by Miller (1972) using O-nitrophenyl -D-galactopyranoside
as a substrate. The activity unit was calculated using the formula:
1,000 × A420/(A600 × assay time in minutes × assay volume in milliliters).
Construction of Phylogenetic Trees
Alignment of conceptual amino acid sequences was made using the
Jotun Hein method in the program MegAlign of the DNASTAR (Madison, WI)
phylogenetic package. Phylogenetic trees were constructed by comparing
170 amino acid sequences comprising the MADS box, the I region, and the
K domain.
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RESULTS |
Isolation of a Rice cDNA Clone Encoding a MADS Box Protein
A cDNA clone was isolated by screening the Uni-ZAP cDNA library
that was prepared from rice floral primordia using the
OsMADS1 cDNA as a probe (Chung et al., 1994 ). This clone was
designated OsMADS6. DNA sequence analysis showed that this
cDNA clone is 1,043 nucleotides long and encodes a putative protein of
250 amino acid residues (calculated Mr = 28,400; accession no. U78782). The MADS box domain of the cDNA clone
is located between the 2nd and 57th amino acids of the protein (Fig.
1A). This region is the most conserved
region, as observed from other MADS box proteins. The second conserved
domain, the K box, is located between the residues 91 and 156.

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| Figure 1.
Deduced amino acid sequence comparisons of MADS
box proteins. A, Alignment of the amino acid sequences of OsMADS6,
ZAG3, ZAG5, and AGL6. The two conserved motifs of the C region are
indicated in bold. B, Alignment of the amino acid sequences of OsMADS14
and ZAP1, an AP1 homolog of maize. The MADS box regions are underlined
and the K domains are double underlined. Asterisks indicate identical
amino acid residues. Dashes indicate gaps introduced to maximize
alignments.
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The OsMADS6 protein contains two variable regions: the I region between
the MADS and K boxes and the C-terminal region downstream of the K box
(Purugganan et al., 1995 ). The C-terminal region of OsMADS6 has two
short motifs, EPTLQIG and AENNFMLGWVL, which are partially conserved in
ZAG3, ZAG5, AGL2, AGL4, and
AGL9 (Fig. 1A). Based on amino acid sequence similarity of
the entire coding region, OsMADS6 can be grouped into the
AP1/AGL9 family (Purugganan et al., 1995 ), which
includes AGL2 and AGL4 of Arabidopsis (Ma et al.,
1991 ), ZAG3 and ZAG5, the maize homolog of
AG (Mena et al., 1995 ), floral binding protein 2 (FBP2) of petunia (Angenent et al., 1994 ),
TM5 of tomato (Pnueli et al., 1994 ), and
OsMADS1, OsMADS5, OsMADS7, and
OsMADS8 of rice (Chung et al., 1994 ; Kang and An, 1997 ; Kang
et al., 1997 ). Among these genes, OsMADS6 was the most
homologous to ZAG3 (84%) and ZAG5 (82%).
Two-Hybrid Screening
We conducted yeast two-hybrid screening to identify proteins that
interact with OsMADS6. We initially made a fusion between the GAL4
binding domain and the OsMADS6 protein containing the K domain and the
C-terminal region. This fusion molecule (pBD/OsMADS6-KC) by itself was
able to activate the HIS3 and -galactosidase
(LacZ) selectable reporter genes, which were under the
control of the GAL1 and GAL4 upstream activating sequences,
respectively. This indicates that the K domain and the C-terminal
region carries an activation domain. It was recently observed that
other MADS box proteins also carry an activation domain in the
C-terminal regions (Moon et al., 1999 ). Therefore, we made another
molecule that was identical to pBD/OsMADS6-KC except that most of the
C-terminal end was deleted, leaving only the 14 amino acid residues of
the C region located immediately downstream of the K region. This plasmid, pBD/OsMADS6-KC14, was introduced into the yeast strain YRG-2,
and the transformants were tested for activation of the HIS3
selectable marker. The transformants did not grow on a medium lacking
His, demonstrating that the fragment containing the K domain and 14 amino acid residues of the C region of OsMADS6 does not contain an
activator domain.
We therefore proceeded to introduce the cDNA expression library
constructed from the mRNA of young rice panicles into the YRG-2 yeast
strain containing pBD/OsMADS6-KC14. A total of 1.4 × 106 transformants was screened for their ability
to grow on a medium lacking His. This initial screening identified 59 colonies, which were subsequently tested for activation of the
LacZ gene. These experiments resulted in the identification
of 45 colonies that activated both HIS3 and LacZ.
Plasmid DNAs were prepared from these colonies and retransferred into
the YRG-2 strain to confirm whether the activation is indeed due to the
presence of the fusion protein. We observed that 39 plasmids were able
to activate the LacZ gene only in the presence of
pBD/OsMADS6-KC14. Sequence determination of these clones revealed that
38 plasmids contained an ORF that exhibited a significant homology to
MADS box proteins (Table I). The
remaining plasmid had some homology to MADS genes, but was significantly different from typical plant MADS box genes. This clone
was not studied further.
Eleven of the clones encoded for previously identified MADS box
proteins; of these, six clones belong to OsMADS1 (Chung et al., 1994 ), two to OsMADS5 (Kang and An, 1997 ), and three to
OsMADS7 (Kang et al., 1997 ). The remaining plasmids encode
for MADS box proteins not previously reported. Twelve of these were
partial clones of an identical MADS box gene, although the 5 ends were different from each other (Fig. 2). This
gene was designated OsMADS14. Thirteen clones encoded for an
identical protein of another MADS box protein. The gene for these
clones was designated OsMADS15. Both the OsMADS14 and
OsMADS15 proteins were highly homologous to ZAP1. Among the remaining
two clones, one clone, OsMADS17, showed a high similarity
with ZAG3 and the last clone, OsMADS18, was the
most homologous to ZAP1.

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| Figure 2.
The nucleotide sequence and the deduced amino acid
sequence of OsMADS14. The MADS box region is underlined,
and the K domain is double underlined. The 10 repeats of the GGA
sequence in the 5 -UTR are indicated in bold type. The primer sequence
used in isolation of the 5 region of the gene is underlined.
Arrowheads and numbers below the amino acid sequence indicate positions
of the first amino acid of the fusion proteins selected by the yeast
two-hybrid screening and the number of selected clones with the same
first amino acid, respectively. The XhoI site used for
generation of the gene-specific probe (accession no. AF058697) is
indicated in bold type.
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Isolation of the OsMADS14 cDNA Clone Containing an Entire ORF
All of the twelve cDNA clones of OsMADS14
selected by the two-hybrid screening were partial, lacking the 5
region that encodes for the N-terminal end of the protein (Fig. 2). The
5 region was isolated by PCR using a vector primer and the cDNA
specific primer. A cDNA clone of 1,355 bp, containing the entire ORF,
was generated by connecting the 5 region to the cDNA clone obtained from the two-hybrid screening. It contains a 287-bp 5 -UTR and an ORF
of 246 amino acid residues (calculated
Mr = 28,500; accession no. AF058697).
The 5 UTR of OsMADS14 cDNA contains 10 repeats of the GGA
sequence (Fig. 2), and such repeat sequences were previously observed from other rice MADS-box genes (Chung et al., 1994 ; Kang and An, 1997 ;
Kang et al., 1997 ). The OsMADS14 protein contains a MADS box domain
which consists of 56 conserved amino acids present in the N-terminal
region of all of the MADS transcription factors (Figs. 1B and 2). The K
box domain, a region considered to participate in the
protein-to-protein interaction, is also present between amino acid
residues 91 and 158. Amino acid sequence comparison revealed that
OsMADS14 was 72.4% homologous to ZAP1, an AP1 homolog of maize.
Expression Patterns of OsMADS6 and OsMADS14
It has been well established that there are a large
number of MADS box genes in the rice genome (Chung et al., 1994 ).
Therefore, it was necessary to identify the region that does not cross
hybridize with other MADS box genes by genomic DNA blot analyses. It
was observed that the 300-bp PstI-EcoRI fragment
located at the C-terminal region of OsMADS6 hybridized to a
single DNA fragment (Fig.
3A). Likewise, the 630-bp XhoI
fragment of OsMADS14 was shown to be a
gene-specific region. In genomic DNA analysis of OsMADS14,
three PstI fragments were hybridized with the probe (Fig.
3A), due to the presence of two PstI sites in the region
used for the probe.

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| Figure 3.
Genomic DNA blot analysis and RNA blot analysis of
OsMADS6 and OsMADS14. A, Southern blot
analysis of OsMADS6 and OsMADS14. The
rice genomic DNA was digested with EcoRI (E),
HindIII (H), or PstI (P). The numbers
indicate the size (in kb) of the DNA markers. B, RNA blot analysis of
OsMADS6 and OsMADS14. Ethidium bromide
staining of 25S and 17S rRNAs demonstrated equal amounts of RNA loading
(data not shown). Lane L, Leaves; lane R, roots; lane Sl, sterile
lemmas; lane P, paleas/lemmas; lane Lo, lodicules; lane S, stamens;
lane C, carpels; lane 1, young flowers with a panicle size of 1 to 5 cm; lane 2, flowers at the early vacuolated pollen stage; lane 3, flowers at the late vacuolated pollen stage.
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RNA blot analyses were conducted using the gene-specific probes. The
results showed that the OsMADS6 transcript was detectable primarily in lodicules and also weakly in sterile lemmas and carpels of
flowers at the late vacuolated pollen stage (Fig. 3B). However, the
transcript was not detectable in stamens, paleas/lemmas, and vegetative
organs. The spatial expression pattern of OsMADS14 was
different from that of OsMADS6. Transcripts of this clone were detectable primarily in sterile lemmas and also weakly in paleas/lemmas, stamens, and carpels (Fig. 3B). However, the
OsMADS14 transcripts were not detected in lodicules and
vegetative organs. During flower development the OsMADS6 and
OsMADS14 genes were expressed at an early stage, and their
expression was extended into later stages of flower development (Fig.
3B).
Interaction between OsMADS6 and Other MADS Box Proteins
The yeast two-hybrid screening resulted in identification of seven
types of MADS box proteins that interact with OsMADS6. To confirm these
results, we investigated the protein-to-protein interaction between
OsMADS6 and other rice MADS box proteins. The C-terminal half
containing the K domain and C region of OsMADS1, OsMADS3, OsMADS4, OsMADS5,
OsMADS6, OsMADS7, OsMADS8,
OsMADS14, OsMADS15, OsMADS17, and
OsMADS18 was fused to the activation domain of
GAL4 using the pADGAL4 vector. These plasmids were
introduced into the yeast strain YRG-2 containing the binding domain
plasmid pBD/OsMADS6-KC14. The colonies that grew on a medium lacking
Leu and Trp were examined for -galactosidase activity. The
results in Table II show that the KC
regions of OsMADS1, OsMADS5, OsMADS7, OsMADS8, OsMADS14, OsMADS15,
OsMADS17, and OsMADS18 were able to activate the LacZ gene.
However, the KC regions of OsMADS3, OsMADS4, and OsMADS6 did not
activate the reporter gene. Western blot analyses showed that the
-galactosidase protein level was proportional to the enzyme activity
(data not shown).
To confirm the lack of interaction, the region containing the K domain
and 14 amino acids of the C-terminal region of the OsMADS3 and OsMAS4
proteins were fused to the binding domain vector pBDGAL4. Most of the
C-terminal regions of OsMADS3 and OsMADS4 were not included in the
construction to avoid a potential activator domain. Introduction of
these plasmids into the YRG-2 strain containing pAD/OSMADS6-KC did not
activate the LacZ gene (data not shown). These results
showed that OsMADS6 interacts with OsMADS1, 5, 7, 8, 14, 15, 17, and
18, members of the AP1/AGL9 family, but not to the B and C class of
MADS box proteins, OsMADS4 and OsMADS3; it also failed to interact with
OsMADS6 itself.
Identification of the Protein-to-Protein Interaction Motif
The motif responsible for the protein-to-protein interaction
between OsMADS6 and OsMADS14 was investigated using the yeast two-hybrid system. The MADS box domain and the I region (MI), the K
domain and 14 amino acid residues of the C-region (KC14), the MI and
KC14 region (MIKC14), and the K domain (K) of OsMADS6 were connected to
the activation domain and the binding domain of GAL4. The K domain and
C-terminal region (KC) of OsMADS6 was fused to the activation domain of
GAL4. Similarly, the MI region, the MIKC14 region, and the KC14 region
of OsMADS14 were connected to the activation domain and the binding
domain of GAL4, and the KC region of OsMADS14 to the activation domain.
The transformants that grew on a medium lacking Leu and Trp were
examined for activation of the LacZ gene by a
-galactosidase activity analysis (Table III). When pAD/OsMADS6-K and
pBD/OsMADS14-KC14 were introduced into YRG-2, the LacZ gene
was activated. Similarly, pBD/OsMADS6-K and pAD/OsMADS14-KC activated
the reporter gene expression. Moreover, OsMADS6-MIKC14 activated the
LacZ gene in the presence of OsMADS14-MIKC14. However, the C
region by itself containing amino acids 171 to 250 of OsMADS6 did not
activate the LacZ gene in the presence of OsMADS14-KC (data
not shown). Furthermore, OsMADS6-MI and OsMADS14-MI did not activate
the LacZ gene (Table III). These results suggest that the K
box is primarily responsible for heterodimerization between OsMADS6 and
OsMADS14. Interestingly, including the 14 amino acid residues
immediately downstream of the K box enhanced the enzyme activity by 5- or 20-fold (Table III), suggesting that the 14 residues stabilized or
enhanced the interaction in the yeast two-hybrid system.
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Table III.
Investigation of the motif responsible for
protein-to-protein interaction between OsMADS6 and OsMADS14
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To narrow down the motif responsible for the protein-to-protein
interaction, the KC14 region of OsMADS6 was divided into three regions;
KI (86th to 110th amino acid), KII (109th to 137th amino acid), and
KIII (138th to 170th amino acid) (Fig.
4). The three regions were connected into
the binding domain of GAL4 and introduced into the yeast strain YRG-2
containing pAD/OsMADS14-KC. The results in Table III show that only the
KII region activated the LacZ gene, suggesting that this
region plays an important role in the protein-to-protein interaction.
The experiment also indicated that the KIII region alone did not bind
to OsMADS14, but enhanced the interaction between these proteins. When
pAD/OsMADS14-KC14 was used as the activation domain plasmid instead of
pAD/OsMADS14-KC, similar results were observed, although the
-galactosidase activities generally decreased (data not shown).
Also, when those regions of OsMADS6 were fused into the activation
domain and OsMADS14 was connected to the binding domain, similar
results were obtained, except that pAD/OsMADS6-KII did not activate the
LacZ gene in the presence of pBD/OsMADS14-KC14 (Table III).
None of the activation domains or binding domain plasmids used in these
experiments activated the LacZ gene by itself (data not
shown).

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| Figure 4.
Amino acid sequence alignment of the region
containing the K domain of OsMADS6 with those of OsMADS1, OsMADS5,
OsMADS7, OsMADS8, OsMADS14, OsMADS15, OsMADS17, and OsMADS18. The
region of OsMADS6 was divided into three regions: the KI region (amino
acids 86-110), the KII region (amino acids 109-137), and the KIII
region (amino acids 138-170). The entire K domain of OsMADS6 is
underlined. The replaced amino acids are indicated below each Leu with
arrows. The conserved hydrophobic residues, such as Leu, Ile, Val, and
Met, are shaded. The numbers indicate the positions of mutagenized Leu
residues and the first and last amino acids of the K region elucidated
in this study.
|
|
Identification of the Amino Acid Residues Responsible for the
Protein-to-Protein Interaction
Because it was determined that the KII and KIII regions containing
amino acids 109 to 170 of OsMADS6 play an important role in the
protein-to-protein interaction between OsMADS6 and OsMADS14, we
investigated the amino acid residues responsible for the interaction. The KII and KIII regions of OsMADS6 have periodical and conserved Leu
residues (Fig. 4). It has been previously suggested that such hydrophobic repeats may be involved in protein-to-protein interactions (Ma et al., 1991 ; Pnueli et al., 1991 ; Theissen et al., 1995 ). Therefore, we made the following five mutant fragments:
OsMADS6-KIIS110R118: replacement of Leu-110 residue with Ser and Leu-118 with Arg in the KII
fragment;
OsMADS6-KIIR126R134:
replacement of Leu-126 and Leu-134 Leus with Arg residues in the KII
fragment;
OsMADS6-KIIS110R118+KIII: replacement of Leu-110 with Ser and Leu-118 with Arg in the KII+KIII fragment;
OsMADS6-KII+KIIIR159R166:
replacement of Leu-159 and Leu-166 with Arg residues in the KII+KIII
fragment; and
OsMADS6-KIIS110R118+KIIIR159R166: replacement of Leu-110 with Ser and Leu-118, Leu-159, and Leu-166 Leus
with Arg residues in the KII+KIII fragment.
These mutant fragments were connected to the binding domain of GAL4 and
transferred into the YRG-2 strain containing the activation domain
plasmid pAD/OsMADS14-KC. The results in Table
IV show that mutations in Leu-110 and
Leu-118 diminished the interacting ability of the KII fragment.
Similarly, mutations of Leu-126 and Leu-134 also significantly affected
the activity. These results suggest that the four periodical Leus in
the KII region are necessary for interaction between the K box regions.
When the mutations at Leu-110 and Leu-118 were introduced into the
KII+KIII fragment, the enzyme activity was reduced, but still retained
a significant level of activity. However, when mutations were
introduced into both KII and KIII regions by replacing Leu-110,
Leu-118, Leu-159, and Leu-166, the activity was almost completely
diminished. These results, together with the results shown in Table
III, indicate that the KIII region alone is not sufficient for protein
interaction, but is able to enhance the interaction between MADS box
proteins.
View this table:
[in this window]
[in a new window]
|
Table IV.
Investigation of the amino acid residues
responsible for the interaction between OsMADS6 and OsMADS14 by
site-directed mutagenesis of amino acids in the K domain and 14 amino acids of the C region of OsMADS6
|
|
When the mutant fragments were used in the construction of activation
domain plasmids and their interaction ability in the yeast strain
carrying the binding domain plasmid pBD/OsMADS14-KC14 was tested,
similar results were obtained except that pAD/OsMADS6-KII and
pBD/OsMADS14-KC14 did not activate the LacZ gene (Table IV). Taken together, these results suggest that the Leu residues in the KII
region are important for the protein interaction and the Leu residues
in the KIII region are involved in enhancing the interaction.
 |
DISCUSSION |
We have isolated the OsMADS6 gene by screening a young
rice flower library using OsMADS1 as a probe. On the basis
of deduced amino acid sequences, the OsMADS6 gene can be
classified into the AGL6 subfamily (Theissen et al., 1996 ),
which belongs to the AP1/AGL9 family (Purugganan
et al., 1995 ) (Fig. 5). In addition, we
have isolated various MADS box genes that encode for protein-to-protein interaction partners of OsMADS6 by the yeast two-hybrid screening method.

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| Figure 5.
Phylogenetic tree showing the relationship among
AP1/AGL9 family proteins. Rice MADS box proteins are indicated in bold
type. The horizontal branches are proportional to the number of base
substitutions. 1, 7, 8, 18, 23, 24, and 25, Arabidopsis; 9, 19, 20, and
26, snapdragon; 10, 14, and 15, maize; 11, 12, 13, 16, 17, 27, 28, 29, and 30, rice; 21, petunia; 3, potato; 4 and 22, tomato; 5, Silene latifolia; 2 and 6, Sinapis
alba.
|
|
It was observed that the region containing the K domain and the
C-terminal region of OsMADS6 had transcription activation ability in
yeast. The region responsible for the activation appears to be located
in the C-terminal region, since deletion of the region eliminated the
activation ability. Recently, we reported that OsMADS16, a rice AP3
homolog, contains a motif responsible for the transcription activation
ability in the C-terminal region (Moon et al., 1999 ). We also observed
the transcription activation ability of other rice MADS box proteins
such as OsMADS1, OsMADS3, OsMADS5, OsMADS7, OsMADS8, and OsMADS14
(unpublished data), and found that one of the roles of the C-terminal
region of MADS box proteins is transcription activation.
Almost all of the genes isolated by two-hybrid screening using OsMADS6
corresponded to MADS box proteins. This suggests that MADS box proteins
efficiently interact with each other in yeast. The isolated clones
belonged to seven MADS genes that can be classified into three groups
in the AP1/AGL9 family (Table I; Fig. 5). The OsMADS1, OsMADS5, and OsMADS7 genes
belong to the AGL2 subfamily, the OsMADS17 gene belongs to
the AGL6 subfamily, and the OsMADS14, OsMADS15, and OsMADS18 genes belong to the
SQUA subfamily (Theissen et al., 1996 ). In addition to these
seven MADS box proteins, OsMADS6 also interacted with OsMADS8, which is
also a member of the AGL2 subfamily (Kang et al., 1997 ). However,
OsMADS6 did not interact with OsMADS3 and OsMADS4, rice homologs of
AG and PI, respectively (Table II). In addition,
OsMADS6 failed to interact with itself.
In studies using the yeast two-hybrid system, it was previously
reported that AG, a C-class protein in Arabidopsis, interacted with
AP1/AGL9 family proteins such as AGL2, AGL4, AGL6, and AGL9, most of
which are expressed at the early flowering stage (Fan et al., 1997 ).
Moreover, MADS box proteins expressed at the early (SQUA), intermediate
(DEFH200 and DEFH72), and late (DEFH49) stages of flower development
were also identified as interaction partners of PLE, a C-class MADS box
protein in snapdragon, by the two-hybrid screening method (Davies et
al., 1996 ). Sequence similarity and expression patterns showed that
DEFH200 and DEFH72 were very similar to
FBP2 and TM5, and DEFH49 was very
similar to AGL2. These results indicate that C-class
proteins and AP1/AGL9 family proteins interact with each other in
Arabidopsis and snapdragon. However, we demonstrated that in rice the
AP1/AGL9 family proteins interact with each other within the family,
but do not interact with OsMADS3, a C-class protein.
The temporal expression patterns of the rice AP1/AGL9 family
genes, such as OsMADS1, OsMADS5,
OsMADS6, OsMADS7, OsMADS8, and OsMADS14, were similar (Chung et al., 1994 ; Kang and An,
1997 ; Kang et al., 1997 ). These six MADS box genes were expressed at the early stage of the flower development and their expressions were
extended into later stages of flower development. However, the spatial
expression patterns of these MADS box genes were different. In mature
flowers the OsMADS1 transcript was present in paleas/lemmas and carpels (Chung et al., 1994 ), OsMADS5 in anthers and
weakly in carpels (Kang and An, 1997 ), OsMADS7 and
OsMADS8 in carpels and weakly in anthers (Kang et al.,
1997 ), OsMADS14 in sterile lemmas, paleas/lemmas, stamens,
and carpels, and OsMADS6 in lodicules, sterile lemmas, and
carpels (Fig. 3B). It is likely that an AP1/AGL9 protein cooperates
with another AP1/AGL9 protein coexisting in specific cell types at a
particular developmental stage.
Ectopic expression of OsMADS6 and OsMADS14 in
rice exhibited extreme early flowering and dwarfism, which were also
observed in rice plants ectopically expressing OsMADS1,
OsMADS5, OsMADS7, and OsMADS8
(unpublished results). However, the early flowering and dwarfism in
transgenic plants of those four MADS genes was not as extreme as in
those of OsMADS6 and OsMADS14, indicating that
OsMADS6 and OsMADS14 might regulate a very early
stage of flower development. Further in vivo studies are now being
undertaken to identify whether a heterodimer between OsMADS6 and its
interaction partners participates in these developmental processes.
It is known that MADS box proteins interact with each other to form
dimers (Davies et al., 1996 ; Fan et al., 1997 ). In the present study,
motifs responsible for the interaction between OsMADS14 and OsMADS6
proteins were investigated using the yeast two-hybrid screening method.
Our results showed that the K domain plays a very important role in the
protein-to-protein interaction. In Arabidopsis, it was previously
reported that AG forms a dimer with various AGL proteins via
K-domain-mediated interaction (Fan et al., 1997 ). It was also reported
that the K domain was essential for protein-to-protein interaction
between GLO and DEF (Davies et al., 1996 ).
It has also been suggested that the AG and AGL proteins contain two
helices in the K domain, which may participate in the protein-to-protein interaction (Ma et al., 1991 ). The KI and KII regions of OsMADS6 contain one helix each. In the present study, we
demonstrated that the KII region carrying the second helix plays a more
important role in the interaction. The site-directed mutation analysis
revealed that Leu-126 and Leu-134 of the KII region play an important
role in the interaction. These amino acids are the hydrophobic residues
suggested to cluster on one face of the putative helices (Theissen et
al., 1995 ). Therefore, it can be proposed that the putative helix
structure plays an important role in the K-domain-mediated interaction
between OsMADS14 and OsMADS6.
In Arabidopsis, it was reported that the C region of the AG and AGL
proteins enhanced the K-domain-mediated interaction between these
proteins (Fan et al., 1997 ). In the present study, we showed that the
14 amino acid residues located immediately downstream of the K domain
enhanced the interaction between OsMADS6 and OsMADS14. In Arabidopsis,
ag-4 mutants that result from deletions of 12 or 14 amino
acids downstream of the K domain retain a partial AG activity (Sieburth
et al., 1995 ). Therefore, it appears that the region is not essential
for function, but is necessary for full activity, probably by enhancing
the interaction between AG and its partner. The deleted amino acids
correspond to the residues between amino acids 142 and 153 or 142 and
155 of OsMADS6, which are located in the KIII region.
We demonstrated by site-directed mutagenesis experiments that Leu-110,
Leu-118, Leu-126, and Leu-134 in the KII region and at Leu-159 and
Leu-166 residues in the KIII region of OsMADS6 play a very important
role in the protein interaction. These periodical hydrophobic residues
are conserved in OsMADS6 and its interaction partners such as OsMADS1,
OsMADS5, OsMADS7, OsMADS8, OsMADS14, OsMADS15, OsMADS17, and
OsMADS18 (Fig. 4), supporting the idea that these amino acids are
important for the function of MADS box proteins.
 |
FOOTNOTES |
1
This work was supported in part by grants from
the Korean Science and Engineering Foundation (no. 96-0401-06-01-3)
and from the Korea Research Foundation (no. 1998-019-D00090).
*
Corresponding author; e-mail genean{at}postech.ac.kr; fax
82-562-279-2199.
Received January 29, 1999;
accepted May 17, 1999.
 |
ACKNOWLEDGMENTS |
We wish to thank Sung Key Jang for valuable suggestions during
yeast two-hybrid experiments, Dong-Hoon Jeong, Jongmin Nam, and Jinwon
Lee for DNA sequencing, and Chahm An for critical reading of the
manuscript.
 |
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