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Plant Physiol, January 2000, Vol. 122, pp. 275-282
Biosynthesis and Elongation of Short- and
Medium-Chain-Length Fatty Acids
Rutger S.
van der Hoeven and
John C.
Steffens*1
Department of Plant Breeding and Biometry, 252 Emerson Hall,
Cornell University, Ithaca, New York 14853.
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ABSTRACT |
Short- and medium-chain-length fatty
acids (FAs) are important constituents of a wide array of natural
products. Branched and straight short-chain-length FAs originate from
branched chain amino acid metabolism, and serve as primers for
elongation in FA synthase-like reactions. However, a recent model
proposes that the one-carbon extension reactions that utilize
2-oxo-3-methylbutyric acid in leucine biosynthesis also catalyze a
repetitive one-carbon elongation of short-chain primers to
medium-chain-length FAs. The existence of such a mechanism would
require a novel form of regulation to control carbon flux between amino
acid and FA biosynthesis. A critical re-analysis of the data used to
support this pathway fails to support the hypothesis for FA elongation
by one-carbon extension cycles of -ketoacids. Therefore, we tested
the hypothesis experimentally using criteria that distinguish between
one- and two-carbon elongation mechanisms: (a) isotopomer patterns in
terminal carbon atom pairs of branched and straight FAs resulting from differential labeling with [13C]acetate; (b)
[13C]threonine labeling patterns in odd- and even chain
length FAs; and (c) differential sensitivity of elongation reactions to
inhibition by cerulenin. All three criteria indicated that biosynthesis
of medium-chain length FAs is mediated primarily by FA synthase-like reactions.
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INTRODUCTION |
The broad structural diversity of short- and medium-chain length
fatty acids (scFAs and mcFAs, respectively) and their derivatives is
incorporated into a wide array of biomolecules as components of
antibiotics, insect pheromones, and plant storage lipids (Denoya et
al., 1995 ; Laakel et al., 1994 ; Tang et al., 1994 ; Giblin-Davis et al.,
1996 ; Schal et al., 1994 ; Pennanec' et al., 1991 ; Charlton and
Roeloffs 1991 ; Knapp et al., 1991 ; Thompson et al., 1990 ; Hartman and Reimann, 1989 ). Understanding the biosynthesis of these compounds is critical both to understanding their regulation and
designing strategies for their manipulation.
scFAs and mcFAs are also found in sugar polyesters secreted by
Solanaceous plants as defensive agents against a wide array of insect
herbivores and pathogens (Gentile and Stoner, 1968 ; Gentile et al.,
1968 , 1969 ; Juvik et al., 1982 , 1994 ; França et al., 1989 ). These
polyesters are composed of either Glc or Suc to which as many as five
or six FAs, respectively, may be esterified (Schumacher, 1970 ; Severson
et al., 1985 ; King et al., 1986 , 1988 , 1990 ; King and Calhoun, 1988 ;
Shinozaki et al., 1991 ; Shapiro et al., 1994 ). The acyl substituents
exhibit a remarkable degree of species-specific structural diversity:
They range in length from 3:0 to 12:0, and include straight-chain,
iso-branched, and anteiso-branched FAs with both
odd and even numbers of carbon atoms.
The biosynthesis of branched-chain FAs has been extensively
investigated in bacteria (Oku and Kaneda, 1988 ; Kang et al., 1997a , 1997b ; Zelles, 1997 ). Iso- and anteiso-branched FAs 14 to 17 carbon atoms long are derived from -keto derivatives of Leu, Val, and Ile,
which serve as short-chain primers for elongation. In this model,
NAD+- and CoA-dependent branched-chain ketoacid
dehydrogenase provides acyl-CoA primers through oxidative
decarboxylation of these ketoacid precursors. A FA synthase (FAS)
system then elongates these three- to five-carbon primers utilizing
malonyl-CoA as a substrate. As an alternative to this model, Oku and
Kaneda (1988) proposed that decarboxylation by branched-chain ketoacid
decarboxylase, rather than oxidative decarboxylation, provides an
aldehyde-based primer for elongation; however, evidence for such
aldehyde derivative products of decarboxylation has not been obtained.
In plants, iso-branched scFAs of sugar polyesters are
similarly derived from branched-chain amino acid metabolism: Val and Leu are incorporated into i4:0 and i5:0 acids
(2-methylpropionic and 3-methylbutyric acid, respectively) through a
process of transamination and oxidative decarboxylation of the
resulting 2-oxoacid (Fig. 1; Kandra and
Wagner, 1990 ; Walters and Steffens, 1990 ; Luethy et al., 1997 ).

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Figure 1.
Role of branched-chain amino acid metabolism in
the biosynthesis of scFA primers. The one-carbon elongation reaction
represented by reactions 1, 2, and 3 (IPMS, IPMDH, and IPMDCase,
respectively) were proposed by Kroumova et al. (1994) to also carry out
further elongation reactions yielding FAs up to C12. Other enzymes or
enzyme complexes include: 4, aminotransferase; 5, branched-chain
oxoacid dehydrogenase complex; 6, Thr dehydratase; 7, aminohydroxy acid
synthase; 8, acetolactate synthase; and 9, dihydroxyacid dehydratase.
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Similar to the iso-branched scFAs, ai5:0
(2-methylbutyric acid) is derived from Thr through conversion into
2-oxo-butyric acid by Thr dehydratase, followed by a multi-enzyme
conversion into 2-oxo-3-methylpentanoic acid (also derived by
transamination of Ile) and subsequent decarboxylation (Fig. 1; Walters
and Steffens, 1990 ). In addition, the incorporation of iso-
and anteiso-branched scFAs and mcFAs into sugar polyesters
is sensitive to chlorsulfuron, an inhibitor of acetolactate synthase, a
key enzyme in branched-chain amino acid metabolism (Kandra et al.,
1990 ; Walters and Steffens, 1990 ). Biogenesis of straight and
iso-branched mcFAs was proposed to occur either through de
novo initiation and extension (for n-fatty acids) or through
utilization of i4:0 or i5:0 primers to generate
even or odd chain-length iso-branched mcFAs, respectively (Walters and Steffens, 1990 ).
However, for petunia (Petunia hybrida) and species in the
genus Nicotiana, which synthesize FAs extended from an
ai5:0 primer to form, for example, ai6:0 and
ai7:0 (3-methylpentanoic and 4-methylhexanoic acid,
respectively; Shapiro et al., 1994 ; Son et al., 1994 ), it is less clear
how a two-carbon elongation mechanism such as FAS could give rise to
the even chain-length ai6:0 product. A novel route for FA
biosynthesis was suggested in which the one-carbon extension reactions
of branched amino acid biosynthesis, i.e. the Leu pathway, were
hypothesized to carry out a much broader range of reactions, including
the elongation reactions leading to biosynthesis of all mcFAs (Fig. 1;
Kroumova et al., 1994 ). The authors propose that one- to
eight-carbon-atom elongation of 2-oxoacids ( -ketoacids) derived from
the cognate amino acids is catalyzed by 2-isopropylmalate synthase
(IPMS), 3-isopropylmalate dehydratase (IPMDH) and 3-isopropylmalate
dehydrogenase (IPMDCase), without the involvement of ketoacyl synthases
or associated reactions of a FAS complex. The proposed mechanism
results in the addition of acetate at each condensation event, followed
by oxidative decarboxylation of the terminal carboxylate, and leads to
formation of a series of elongated FAs varying by one-carbon
increments. A scheme in which extension occurs in one-carbon increments
provides a plausible explanation for ai6:0 and
ai7:0 elongation from ai5:0; however, Kroumova et
al. (1994) suggest that KAE also controls biosynthesis of
iso-branched and normal-chain FAs of both odd and even carbon length.
The initial substrate for the Leu pathway is 2-oxo-3-methylbutyric acid
(Fig. 1). The -ketoacid (2-oxoacid) elongation ( KAE) model
requires that IPMS, IPMDH, and IPMDCase accept, in addition to the
terminal isopropyl group of 2-oxo-3-methylbutyric acid, both
n- and branched alkyl substituents ranging up to 11 carbons in length. Therefore, if IPMS, IPMDH, and IPMDCase were multifunctional enzymes capable of accepting an extremely wide range of alkyl substituents, this would require a far greater degree of integration of
amino and FA metabolism than has been previously understood. Control of
both amino acid and FA biosynthesis by this complex would raise novel
questions with respect to substrate level regulation and
cell-type-specific regulation of IPMS to effect amino acid rather than
FA biosynthesis or vice versa. In addition, this would impose a very
complex regulation of carbon flux between Leu biosynthesis and flux
through iso-, anteiso-branched, and
straight-chain FAs ranging from 3:0 to 12:0.
In addition to the regulatory questions posed by a dual functionality
of IPMS, IPMDH, and IPMDCase in Leu biosynthesis and FA biosynthesis by
elongation of 2-oxoacids, we found that the evidence presented for the
existence of the KAE model posed a number of problems. Therefore, we
chose to critically examine the existence of KAE in FA
biosynthesis using stable isotope-labeling techniques in conjunction
with differentially 13C- or
2H-labeled substrates and gas chromatography-mass
spectrometry (GC-MS).
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MATERIALS AND METHODS |
Materials
L-Val-d8
and [U-13C]Thr were purchased from
Cambridge Isotope Laboratories (Andover, MA).
L-Leu-d10 was
purchased from MSD Isotopes (Claire-Pointe, Quebec). Cerulenin (2,3 epoxy-4-oxo-7, 10 dodecadienamide), [1-13C]acetate,
[2-13C]acetate,
[U-13C]acetate, and
TBA-HSO4 (tetrabutylammonium-hydrogensulfate)
were purchased from Sigma (St. Louis). PFBBr (pentafluorobenzylbromide) was purchased from Pierce Chemical (Rockford, IL).
Precursor Administration
Terminal branch tips of Lycopersicon pennellii (LA
716), Nicotiana umbratica, and petunia (Petunia
hybrida cv Falcon Red) were removed from the plants and placed in
water until further use. Plant material was immersed for 4 to 5 s
in anhydrous ethanol with careful agitation to remove trichome exudate,
after which time the shoots were immediately immersed in water to
remove residual ethanol. Samples of the ethanol wash were saved as
exudate reference samples. After the water wash, shoots and peduncels
were gently blotted with paper towels and a diagonal cut was made on
the stem. The stem was inserted through a layer of Parafilm stretched
across a 5-cm Petri dish filled with a solution of labeled substrate. Substrates were composed of 5 mM
[2H]amino acid or
[13C]NaOAc solutions in deionized water.
Optionally the substrate solutions were provided with 100 µM cerulenin. Incubations were performed for
24 h under a 75 W incandescent lamp placed approximately 15 cm
from the shoots. Every 6 to 8 h the substrate reservoir was
replenished with deionized water. Cerulenin incubations were provided
with a fresh 100 µM solution after the first
6 h of incubation. Samples were prepared by rinsing the shoots in
20 mL of anhydrous ethanol for 4 to 5 s as described above.
Product Analysis
The ethanol extracts were evaporated at 30°C under vacuum, and
dissolved in 600 µL of
CH2Cl2. The FA constituents
of the sugar polyesters were trans-esterified to ethylesters with
sodium ethoxide. Sample preparation and GC conditions were as described
by Walters and Steffens (1990) . A 1-µL aliquot was used for GC injection.
[U-13C]Thr-labeled samples were derivatized
using PFBBr. A 100-µL sample in
CH2Cl2 was evaporated to
dryness under a continuous flow of N2. Sugar
polyesters were treated with 50 µL of 1 M NaOH for 1 h at RT. One-hundred microliters of TBA-HSO4 and
200 µL of 0.06 M PFBBr in
CH2Cl2 were then added and
the derivatization was allowed to proceed for 25 min with frequent
vortexing. GC analysis of [13C]acetate- or
[2H]amino acid-labeled FA ethyl esters employed
a Hewlett-Packard 5890 gas chromatograph (model 5890, Hewlett-Packard,
Palo Alto, CA), equipped with either a flame-ionization or
mass-selective detector (model 5970, Hewlett-Packard) in the selected
ion monitoring (SIM) mode, run as described in Walters and Steffens
(1990) . A DB-FFAP capillary column (30 m, 0.24 mm in diameter, J&W
Scientific, Folsom, CA) was used. The oven was programmed to hold at
60°C for 5 min and then increase to 250°C at 10°C/min.
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RESULTS AND DISCUSSION |
Incorporation of Differentially Labeled [1-, 2-, U-13C]Acetates
We used stable isotopes and SIM-GC-MS to assess how acetate is
incorporated into n-, iso-, and
anteiso-branched FAs. FAs were derivatized as ethyl esters
to facilitate observation of acetate incorporation into the
carboxy-terminal two carbon atoms of each FA. In electron
ionization (EI)-MS these two atoms are retained in the major
McLafferty rearrangement product, m/z 88 (Fig.
2A; McLafferty, 1959 ; Ryhage and
Stenhagen, 1963 ). Therefore, by monitoring m/z 88 and
its +1-atomic mass unit and +2-atomic mass unit isotopomers (m/z 89 and m/z 90, respectively), the means by
which differentially labeled [13C]acetate is
incorporated during FA biosynthesis can be unambiguously assessed. The
biogenesis of normal, iso-branched, and
anteiso-branched scFAs and mcFAs can be visualized
as taking place by three possible routes; two distinct patterns of
labeling with [1-13C]-,
[2-13C]-, or
[U-13C]acetate can be predicted:

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Figure 2.
A, McLafferty rearrangement of FA ethyl esters in
EI-MS permits sampling of isotopic enrichment in the carboxy-terminal
two-carbon fragment. B, Biosynthetic mechanism of FA elongation
predicts distinct patterns of [13C]-enrichment ( ) of
FA carboxy-terminal two-carbon fragments (m/z 88 isotopomer) after incorporation of differentially labeled
[13C] acetates into either m/z 89 or
m/z 90. Consecutive incorporation of two labeled
acetates was not detectable by SIM-MS, because at incorporation rates
of approximately 1%, this results in an insignificantly low enrichment
of 0.01%. Also note that in the KAE model, both
[2-13C]- and [U-13C]acetate incorporation
predicts enrichment of the m/z 89 isotopomer in either
C1 or C2. Randomization of label would result in m/z 89 enrichment regardless of whether [1-13C]-,
[2-13C]-, or [U-13C]actetate is
administered. For example, when petunia was used in these studies,
m/z 89 was enriched in all FAs analyzed, regardless of
initial position of the heavy atom in the precursor.
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1. De novo biosynthesis through FAS-mediated reactions and extension of
n-, branched-, even-, or odd-chain-length primers via
FAS-mediated reactions predicts enrichment of the m/z 89 isotopomer when either [1-13C]- or
[2-13C]acetate is incorporated, and enrichment
of the m/z 90 isotopomer when
[U-13C]acetate is incorporated.
2. Biosynthesis through the KAE pathway or through the FAS-mediated
extension reactions coupled to one-carbon chain-shortening events
predicts enrichment of the m/z 89 isotopomer when either [2-13C]- or
[U-13C]acetate is incorporated, but no
enrichment when [1-13C]acetate is incorporated
(Fig. 2B).
The data can be interpreted directly from these predictions (Table
I). For the iso-branched FAs
of L. pennellii and N. umbratica, i5:0
shows m/z 89 enrichment with
[2-13C]- and
[U-13C]acetate and no enrichment with
[1-13C]acetate, in accordance with its
IPMS-based biosynthesis from 2-oxo-3-methylbutyric acid; oxidative
decarboxylation of 2-oxo-4-methylpentanoic acid results in loss of the
C1-carboxyl derived from acetyl-CoA. i8:0 and
i10:0 (6-methylheptanoic and 8-methylnonanoic acid) are extension products from an i4:0 primer (Walters and
Steffens, 1990 ). Both i8:0 and i10:0 show a
pattern of incorporation consistent with elongation by a FAS-based
mechanism: enrichment of m/z 89 when
[1-13C] or
[2-13C]acetate is incorporated, and
m/z 90 enrichment when
[U-13C]acetate is incorporated. The labeling
patterns for i8:0 (in N. umbratica) and
i10:0 (in L. pennellii) are consistent with two
and three cycles, respectively, of FAS-like extension from an
i4:0 primer, as suggested by the previous observation of
d8-Val incorporation into
d7-i10:0 (Walters and
Steffens, 1990 ). In accordance with this, the FAS-like extension of
d9-i5:0
(d9-3-methylbutyric acid), which is
derived from d10-Leu by transamination
and oxidative decarboxylation, results exclusively in the formation of
d9-i9:0 and
d9-i11:0 (7-methyloctanoic
and 9-methyldecanoic acid [Walters and Steffens, 1990 ; this paper]).
In contrast, the labeling of i6:0 (4-methylpentanoic acid)
in N. umbratica resembles that predicted for a
chain-shortening or KAE event: enrichment of m/z 89 when [2-13C]- and
[U-13C]acetate are incorporated, and no
enrichment when [1-13C]acetate is provided.
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Table I.
Percent enrichment of FA-derived m/z 89 and 90 isotopomers after incorporation of differentially
[13C]-labeled acetates
The abundance of m/z 89 and 90 isotopomers relative to the
m/z 88 fragment was calculated, and enrichment was obtained
by subtracting the ratios for m/z 89, and 90 fragments of
the control sample. The m/z 88 McLafferty rearrangement
fragment allowed analysis of the abundant (>1 mol %) branched and
n-FAs of L. pennellii (L.p.) and N. umbratica (Nu.). Mol % fatty acid composition (FID
detection) in L. pennellii (LA 716) sugar polyesters:
n3:0; 0.18, i4:0; 50.62, ai5:0; 19.38, i5:0; 3.64, i9:0; 0.16, n9:0; 0.03, i10:0; 13.73, n10:0; 8.36, i11:0; 0.40, n11:0; 0.07, i12:0; 0.38, n12:0; 3.05. For
N. umbratica: n3:0; 3.13, i4:0; 5.67, ai5:0; 17.92, i5:0, 5.52, ai6:0; 51.37, i6:0; 5.03, ai7:0; 8.10, n7:0; 1.45, i8:0; 1.44, n8:0; 0.37. The fatty acids n4:0,
n5:0, and n6:0 <0.5% in N. umbratica were only detectable by SIM GC-MS. The acetyl group
constitutes 40.3 mol % of total acyl groups in N. umbratica
sugar polyesters (Shinozaki et al. 1991 ); however, in these
GC-experiments ethylacetic acid is obscured by the solvent peak
(hexane), and is therefore not accounted for in calculating the mol % fatty acid composition. The mol % distribution for the straight acyl
groups in Petunia cv, Falcon Red (P.h.).
n5:0; 3.61, i5:0; 34.54, n6:0, 8.84, i6:0; 11.96, n7:0; 19.35, nC8: 21.70. However,
Petunia cv Falcon Red also contains a number of branched fatty acids
and minor amounts of other straight fatty acids, which are not
accounted for here. Note that for structural reasons
i4:0 and ai5:0 cannot undergo
McLafferty rearrangement to m/z 88 and related isotopomers
(Fig. 1). ND, Not detectable (<0.01%
enrichment).
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Similarly, the branched acids ai6:0 and ai7:0
(3-methylpentanoic and 4-methylhexanoic acid) of N. umbratica exhibit a labeling pattern consistent with that
predicted by either terminal C1 elimination of FAS-extended products or
KAE. Both ai6:0 and ai7:0 show enrichment of
m/z 89 when [2-13C]- and
[U-13C]acetate are incorporated, and none when
[1-13C]acetate is incorporated. It is possible,
as an alternative mechanism for the KAE-model, that in N. umbratica i6:0 originates from one cycle of FAS-like elongation of
i5:0 to i7:0, followed by C-1 elimination to
yield i6:0. By analogy, in this species ai5:0 may
be elongated to ai7:0 to yield ai6:0 after C-1
elimination. Subsequently, ai6:0 would serve as a primer to
yield ai7:0 through a similar process.
Even- and odd-numbered n-FAs ranging in length from 7:0 to
12:0 in L. pennellii and N. umbratica precisely
follow the pattern predicted by FAS, with enrichment of m/z
89 when [1-13C] or
[2-13C]acetate is incorporated, and
m/z 90 enrichment when
[U-13C]acetate is incorporated. This is
consistent with a de novo origin of the even-chain-length FAs, and for
the odd-chain-length FAs is consistent with a two-carbon elongation of
an odd-carbon-chain-length primer supplied by Thr, through its
conversion to 2-oxobutyric acid followed by oxidative decarboxylation
(Walters and Steffens, 1990 ; Kroumova et al., 1994 ).
In contrast to L. pennellii and N. umbratica,
enrichment of the m/z 89 isotopomer occurs regardless of
whether [1-13C],
[2-13C]-, or
[U-13C]acetate is administered to petunia. This
pattern of labeling is consistent only with a high degree of label randomization.
Analysis of [U-13C]Thr Incorporation
An interesting question concerns the identity of the primers used
to elongate FAs of odd and even carbon atom chain length. For example,
Table I shows that odd-carbon-chain-length n-FAs are
extended from an odd-chain-length primer by a FAS-like mechanism. We
have previously shown that feeding Thr to L. pennellii
elevated the levels of n3:0, n9:0, and
n11:0 FAs occurring in sugar polyesters. Together, these
data suggest that Thr is converted to the n3:0 primer via
Thr dehydratase to yield 2-oxo-butyric acid and oxidative decarboxylation to yield propionyl-CoA. The n3:0 primer is
then elongated by FAS-like mechanisms to n9:0 and
n11:0. Similarly, when acetolactate synthase is inhibited by
chlorsulfuron, n3:0, n9:0, and n11:0
become significant constituents of sugar polyesters (Walters and
Steffens, 1990 ). This is consistent with elongation of an 2-oxobutyric
acid-derived n3:0 primer by three and four cycles of
FAS-like extension to n9:0 and n11:0, respectively.
In contrast, the KAE pathway predicts that both odd- and
even-chain-length FAs are derived from single-carbon extension
reactions acting upon a Thr-derived n3:0 primer (Walters and
Steffens, 1990 ). Therefore, we examined the ability of
[U-13C]Thr to serve as a primer for normal and
anteiso-branched scFAs and mcFAs (Table II). In this case we
prepared pentafluorobenzyl esters to maximize the appearance of FA
molecular ions by EI-MS. Because incorporation of amino acids into
sugar polyester acyl substituents is far more efficient than
incorporation of acetate, SIM analysis was sensitive enough to detect
the less-abundant straight-chain FAs of length n3:0 in N. umbratica
(n4:0-n8:0), and n9:0 and
n11:0 in L. pennellii, in addition to abundant
anteiso-branched and straight FAs in both species (legend of
Table II). Incorporation of
[U-13C]Thr, containing four
13C atoms, into FAs leaves three
13C atoms to form the backbone of both
n3:0 (13C loss by oxidative
decarboxylation of 2-ketobutyrate) and ai5:0 through the Ile
pathway (13C loss by oxidative decarboxylation of
2-oxo-3-methylpentanoic acid). Therefore, SIM analysis followed the
molecular and M+3 isotopomer ions of PFB-derivatized FAs.
In accordance with the data for acetate incorporation, we found
incorporation of Thr into all anteiso-branched FAs,
confirming that 2-oxo-3-methylpentanoic acid serves as a primer in the
anteiso-branched pathway. Furthermore, we found that M+3 enrichment
occurred exclusively in n3:0, n9:0, and
n11:0 of L. pennellii. No Thr was incorporated into even chain-length FAs. Therefore, together with the evidence that
acetate is incorporated intact into the carboxyl-terminal two carbon
atoms of these FAs, it can be concluded that in L. pennellii
odd-chain-length n-FAs are derived from the odd-chain-length n3:0 primer. Therefore, even-chain-length normal FAs are
likely to be derived from de novo synthesis initiated from a two-carbon primer extended in two-carbon increments.
In contrast, N. umbratica showed Thr incorporation into a
much wider array of FAs. This occurred at high efficiency in
n3:0, n4:0, n5:0, and n7:0
(up to 50% of incorporation) and much less efficiently in
n8:0 (less than 5%). As demonstrated earlier,
n7:0 and n8:0 are extended in two-carbon
increments (Table I) in which n5:0 and n4:0,
respectively, are implicated to serve as intermediates, thereby
accounting for the incorporation of the isotopically enriched n3:0 primer. The biogenesis of n4:0 remains
uncertain. Clearly, n3:0 is extended to n5:0 and
n7:0. We propose that n5:0, derived from one
cycle of FAS elongation of n3:0, undergoes C1 elimination to
form n4:0, which then serves as a primer for FAS-like
elongation to n8:0 (Shine and Stumpf, 1974 ; Baardseth et
al., 1987 ).
Inhibition of FA Elongation by Cerulenin
Because patterns of stable isotope labeling strongly indicated
FAS-like mediation of mcFA elongation in sugar polyester mcFAs, we
explored the sensitivity of this process to cerulenin, a specific inhibitor of -ketoacyl synthase (KAS). A number of KAS-condensing enzymes have been identified in plants: KAS I, II, III, and IV (Shimakata and Stumpf, 1982 ; Jaworski et al., 1989 ; Dehesh et al.,
1998 ). KAS I is capable of utilizing 2:0-ACP to 14:0-ACP as a substrate
for elongation and is completely inhibited in vitro by 10 µM cerulenin. KAS II is primarily active with 14:0-ACP
and 16:0-ACP as a substrate for elongation and is much less sensitive to cerulenin, i.e. 50% inhibition at 50 µM cerulenin
(Shimakata and Stumpf, 1982 ). KAS III specifically synthesizes scFAs
and is not sensitive to cerulenin (Jaworski et al., 1989 ). KAS III utilizes 6:0-ACP to form 8:0-ACP, and is inactive with 8:0- and longer
acyl-ACPs as a substrate (Clough et al., 1992 ). Similarly, KAS IV has
been shown to extend 6:0-ACP to 8:0-ACP in an extract of KAS IV
overexpressing transgenic Brassica seeds in the presence of
100 µM cerulenin, but the further extension of
8:0-ACP to 10:0-ACP activity was strongly inhibited by cerulenin
(Dehesh et al., 1998 ).
Incorporation of label into the elongated iso-branched and
normal 10:0, 11:0, and 12:0 FAs was inhibited in vivo in the presence of cerulenin (Table III). Incorporation
of d8-Val into
d7-i10:0 is inhibited 48% by
cerulenin, and its incorporation into
d7-i11:0 is inhibited
approximately 70% (after incorporation of
d8-Val into
d7-i5:0). As shown previously,
d10-Leu is incorporated into d9-i5:0 and elongated in
two-carbon increments exclusively into d9-i9:0 and
d9-i11:0 (Walters and
Steffens, 1990 ). Incorporation of
d10-Leu into
d9-i11:0 is also inhibited
approximately 60% by cerulenin (Table III). Cerulenin also inhibits
the incorporation of [U-13C]acetate into
n10:0, i10:0, and n12:0 by 81%, 67%,
and 51%, respectively, while having no effect on incorporation into
shorter FAs (data not shown).
Incorporation of d8-Val and
d10-Leu into i4:0 and
i5:0 is not significantly affected by cerulenin treatment.
However, incorporation into i9:0 is increased substantially
as a result of cerulenin treatment when either
d8-Val or
d10-Leu are administered. Together with the evidence for FAS-like activities driving elongation of FAs
from straight and branched primers, the cerulenin insensitivity of
elongation to i9:0 may be related to the involvement of a
KAS III- or KAS IV-like enzyme in the initial elongation of primers; increased incorporation into i9:0 (in length equivalent to
n8:0) would result from cerulenin inhibition of KAS I
activities, which, from cerulenin sensitivity, appear to be responsible
for further elongation to 10:0, 11:0, and 12:0 FAs.
There is no known mechanism by which cerulenin interferes with
branched-chain amino acid biosynthesis; therefore, the proposed -KAE
pathway (Kroumova et al., 1994 ) is unlikely to contribute to the
process of mcFA biosynthesis. Cerulenin sensitivity of FA elongation
strongly indicates that FAS-like reactions are responsible for the
synthesis of mcFAs of sugar polyesters. Together with the stable
isotope labeling patterns employing differentially labeled acetate,
branched amino acids, and Thr, there is little doubt that the
biosynthesis of these mcFAs is a FAS-dependent process.
Our results are therefore at variance with those of Wagner and
co-workers, who based the KAE model on their results with L. pennellii, N. glutinosa, and P. hybrida
(Kandra et al., 1990 ; Kroumova et al., 1994 ). However, in the present
study, petunia completely randomized differentially labeled acetate,
and no conclusion of any kind could be drawn. Furthermore the model for
FA biosynthesis proposed by Wagner and co-workers depends on
observation of differential incorporation of
[1-14C]- and
[2-14C]acetate. According to their proposed
scheme, [1-14C]acetate should not be
incorporated into FAs due to the decarboxylation step catalyzed by
IPMDCase (Kroumova et al., 1994 ). However, when they administered
1-labeled acetate, it was efficiently incorporated in FAs of petunia
(Kroumova et al., 1994 ). This finding was reported to be consistent
with "extensive randomization of this label" (Kroumova et al.,
1994 ). The observation would seem to invalidate the study. The central
assumption required of isotopic labeling is that biological systems do
not discriminate between isotopically labeled molecules and unlabeled
molecules, nor between different isotopically labeled versions of the
same molecule. Therefore, if
[1-14C]acetate is extensively randomized prior
to incorporation, then randomization of
[2-14C]acetate must also be assumed.
Randomization would preclude the conclusion that
[2-14C]acetate is differentially incorporated
into FAs.
In fact, their data also strongly indicate randomization of
[2-14C]acetate as well. Synthesis of isobutyric
acid (2-methyl-propionic acid), analogous to biosynthesis of
2-oxo-3-methylbutyric acid in the formation of Val, is initiated via
acetolactate synthase-catalyzed condensation of acetaldehyde and
pyruvate to form acetolactic acid. Accordingly, the carbonyl carbon
atom of 2-oxomethylbutyric acid, which becomes the carboxyl atom of
isobutyrate, is derived from pyruvate. Therefore, the administration of
labeled acetate should not result in significant carboxyl labeling of
isobutyrate (in the absence of randomization). However, if one assumes
randomization of labeled acetate into pyruvate, the prediction is that
25% of the label should reside in each carbon atom of isobutyrate.
Indeed, the authors report that when
[2-14C]acetate is administered to L. pennellii, about one-quarter (27%) of the radioactivity recovered
in isobutyrate resides in the carboxyl atom.
The experimental design of Kroumoun et al. (1994) requires that
radioactivity does not partition into carbon atoms derived from the
pyruvate primers utilized both by IPMS and by acetolactate synthase;
analysis depends on the ratio of counts per mimute in the terminal
carbon atom to total radioactivity of the molecule. Acceptance of the
hypothesis that the authors' observed ratios match those predicted for
KAE depends on the presence of radioactivity exclusively in those
atoms derived directly from acetate (Fig. 1 in Kroumova et al., 1994 ).
Therefore, the observation that [2-14C]acetate
labels pyruvate invalidates the basis for concluding that KAE-based
elongation reactions contribute to the synthesis of any FA (Kroumova et
al., 1994 ).
In the absence of evidence for the KAE elongation model, we believe
that a simpler explanation for the ai6:0, ai7:0
and i6:0, and n4:0 and n5:0 labeling
patterns observed for N. umbratica may involve a C1
elimination mechanism occurring between some two-carbon elongations at
the short-chain level (Shine and Stumpf, 1974 ; Baardseth et al., 1987 ).
Nevertheless, we have shown here that the structural diversity of sugar
polyester acyl substituents is explicable on the basis of a combination
of amino acid biosynthesis, FAS-like elongation of branched- and
straight-chain primers provided by amino acid biosynthesis, and by de
novo FA biosynthesis to yield the odd- and even-chain-length
n- and branched FAs synthesized by these species.
 |
FOOTNOTES |
Received June 4, 1999; accepted October 11, 1999.
1
Present address: Novartis Agribusiness
Biotechnology Research, 3054 Cornwallis Road, Research Triangle Park,
NC 27709-2257.
*
Corresponding author; e-mail
john.steffens{at}nabri.novartis.com; fax 919-541-8557.
 |
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