Plant Physiol, December 2000, Vol. 124, pp. 1532-1539

UPDATE ON SUGAR SENSING
Plant Sugar-Response Pathways. Part of a Complex Regulatory Web¹

Department of Biochemistry and Cell Biology, MS140, Rice University, 6100 Main Street, Houston, Texas 77005-1892

	INTRODUCTION

TOP INTRODUCTION USE OF SUGAR ANALOGS... WHICH SUGAR ANALOGS ARE... DO HEXOKINASES ACT AS... SNF1-RELATED PROTEIN KINASES... IDENTIFYING SUGAR-RESPONSE... MANY SUGAR-RESPONSE MUTANTS ARE... MANY SUGAR-RESPONSE MUTANTS ARE... CONCLUSIONS LITERATURE CITED

In addition to playing a central role in metabolism, soluble sugars such as Glc and Suc help regulate many developmental and physiological processes in plants (for review, see Koch, 1996; Smeekens, 1998; Sheen et al., 1999; Yu, 1999). For example, sugar levels have been postulated to play an important role in determining the time at which some plant species flower. Treatments that induce flowering can also lead to increased transport of carbohydrates from leaves to shoot apical meristems (Corbesier et al., 1998). This increased sugar transport takes place prior to the rise in metabolic activity that occurs during the transition to flowering, suggesting that sugar levels do not simply rise in response to greater metabolic demand and that sugars may be acting to signal the transition to flowering (for review, see Bernier et al., 1993). Recent findings that Arabidopsis can be induced to flower under conditions of complete darkness by supplying the aerial portions of the plant with exogenous Suc also suggest a role for sugar levels in regulating floral induction (Roldán et al., 1999). A role for sugars in seed germination is suggested by reports that exogenous sugars allow wild-type seeds to germinate in the presence of abscisic acid (ABA; Garciarrubio et al., 1997; Finkelstein and Lynch, 2000). Other developmental processes affected by soluble sugar levels include tuber formation by potatoes (Müller-Röber et al., 1992) and control of root to shoot ratios in a variety of plant species (for review, see Wilson 1988). Sugars are also thought to help control key metabolic processes such as photosynthesis (Krapp et al., 1993) and starch synthesis and breakdown (for review, see Koch, 1996). Strong evidence for the importance of sugars in controlling plant processes is also provided by reports that sugars help regulate the expression of a significant number of plant genes (for review, see Koch, 1996).

Whereas sugars have been implicated in control of many plant processes, the molecular mechanisms by which sugars act remain largely unknown. In contrast, sugar-response pathways have been relatively well characterized in the yeast Saccharomyces cerevisiae (for review, see Johnston, 1999). Information obtained from studies on yeast may be used to make predictions regarding plant sugar-response pathways. For example, as yeast mediate sugar responses via multiple signal transduction pathways, plants may also be expected to utilize several sugar-response pathways. In addition, plant sugar-response pathways may employ homologs of some of the components of yeast sugar-response pathways. The available evidence suggests that some of the most important factors thought to act in yeast sugar-response pathways, such as hexokinase (Hohmann et al., 1999) and SNF1 protein kinase (for review, see Hardie et al., 1998), also play important roles in plant sugar-response pathways. However, although plant and yeast sugar-response pathways are likely to share many features, plants utilize some factors not involved in yeast sugar-response pathways. For example, a calcium-dependent protein kinase acts in sugar-regulated gene expression in plants, but is not known to play a similar role in yeast (Ohto and Nakamura, 1995).

Despite the importance of soluble sugars in regulating plant development and physiology, many fundamental questions regarding plant sugar responses have barely begun to be addressed. For example, precisely which plant processes are sugar regulated remains controversial. In addition, which plant processes are affected by sugars acting in metabolism, as opposed to in signaling, has yet to be determined in most cases. In fact the identities of the molecule(s) that trigger sugar-response pathways remain in question. Although Glc or Suc may act directly as signaling molecules in some sugar-response pathways, other pathways may sense the level of a different sugar or sugar metabolite. In addition, some sugar-response pathways may sense the rate of flux through a particular metabolic pathway, rather than the absolute levels of sugars or sugar metabolites (Krapp et al., 1993). The pathways by which plants respond to sugars as signaling molecules remain to be elucidated. Characterization of these pathways is complicated by the fact that they form part of a complex regulatory web that also includes phytohormone and environmental-response pathways. Several approaches are being employed to address these issues. The remainder of this review focuses on a description of these approaches and some of the results obtained using them.

	USE OF SUGAR ANALOGS TO CHARACTERIZE PLANT SUGAR RESPONSES AND RESPONSE PATHWAYS

TOP INTRODUCTION USE OF SUGAR ANALOGS... WHICH SUGAR ANALOGS ARE... DO HEXOKINASES ACT AS... SNF1-RELATED PROTEIN KINASES... IDENTIFYING SUGAR-RESPONSE... MANY SUGAR-RESPONSE MUTANTS ARE... MANY SUGAR-RESPONSE MUTANTS ARE... CONCLUSIONS LITERATURE CITED

Experiments aimed at testing the effects of sugar concentration on plant developmental or physiological processes often employ treatments designed to alter endogenous sugar concentrations. However, these experiments typically do not allow a distinction to be made between the role of sugars as metabolites as opposed to as signaling molecules.

How then can the role of sugars as signaling molecules be distinguished from their role as metabolites? One possibility is to use non-metabolizable sugar analogs. In theory, demonstration that a non-metabolizable sugar analog can trigger a particular sugar response should provide a good indication that the response is the result of sugars acting as signaling molecules, rather than as metabolites. In addition, it should be possible to use different sugar analogs to obtain information about sugar-response pathways. For example, to determine whether uptake via a specific sugar-transport system is necessary to trigger a particular sugar response, the effects of sugar analogs that are, or are not, substrates for that transport system can be determined. In a similar manner, whether phosphorylation by hexokinase is an essential step in a sugar-response pathway can be assessed by comparing the effects of sugar analogs that are hexokinase substrates versus those that are not. This type of analysis has led to the hypothesis that phosphorylation of sugars by hexokinase, but not further metabolism, plays a key role in triggering sugar-regulated expression of certain genes (Graham et al., 1994; Jang and Sheen, 1994).

	WHICH SUGAR ANALOGS ARE REALLY "NON-METABOLIZABLE"?

TOP INTRODUCTION USE OF SUGAR ANALOGS... WHICH SUGAR ANALOGS ARE... DO HEXOKINASES ACT AS... SNF1-RELATED PROTEIN KINASES... IDENTIFYING SUGAR-RESPONSE... MANY SUGAR-RESPONSE MUTANTS ARE... MANY SUGAR-RESPONSE MUTANTS ARE... CONCLUSIONS LITERATURE CITED

Experiments of the type described above require the availability of appropriate sugar analogs. Experiments to test the role of a particular Glc transporter in sugar responses, for example, ideally would compare the effects of a Glc analog that is transported as efficiently as Glc with the effects of a Glc analog that is not transported at all. Figure 1 presents an idealized model of the transport and metabolism of some of the most commonly used sugar analogs. Although this idealized model may be fairly accurate for some plant systems, unfortunately it is quite inaccurate for others. For example, celery suspension cultures have similar growth rates when fed Man, Suc, or mannitol, suggesting that contrary to the idealized model, Man and mannitol are efficiently metabolized by these cells (Stoop and Pharr, 1993). In Chenopodium rubrum cell-suspension cultures, the primary metabolic products of exogenously-supplied Man and 2-deoxy-Glc are not Man-6-P and 2-deoxy-Glc-6-P (Klein and Stitt, 1998). Also, 3-O-methyl-Glc is a poor substrate for some Glc-uptake systems (Komor et al., 1985). Therefore, the extent to which a particular sugar analog is transported and metabolized varies tremendously among plant species. As a result, unequivocal interpretation of sugar-analog experiments requires that transport and metabolism of the analogs be characterized in the species used in the experiments. This characterization, unfortunately, has yet to be reported for some popular model organisms, such as Arabidopsis.

View larger version (19K): [in this window] [in a new window]   Figure 1.   Idealized model of sugar-analog metabolism. Arrows indicate different steps in transport and metabolism of sugar analogs. Crosses through arrows indicate that, according to the idealized model (shown in blue), the indicated compounds do not progress through that step. Selected exceptions to the idealized model are shown in red and italicized. "1" refers to reference by Stoop and Pharr (1993). "2" refers to reference by Komor et al. (1985).

	DO HEXOKINASES ACT AS SENSORS?

TOP INTRODUCTION USE OF SUGAR ANALOGS... WHICH SUGAR ANALOGS ARE... DO HEXOKINASES ACT AS... SNF1-RELATED PROTEIN KINASES... IDENTIFYING SUGAR-RESPONSE... MANY SUGAR-RESPONSE MUTANTS ARE... MANY SUGAR-RESPONSE MUTANTS ARE... CONCLUSIONS LITERATURE CITED

The question of how plants sense sugar is fundamental to our understanding of plant sugar-response pathways. In yeast, hexokinases have been postulated to have dual functions in Glc sensing and phosphorylation. According to this model the conformational alteration induced in hexokinase PII during binding and/or phosphorylation of Glc may allow hexokinase PII to interact with some as yet unidentified factor(s), thereby triggering sugar responses (Entian and Fröhlich, 1984). Hexokinases have also been suggested to act as hexose sensors in plants (Graham et al., 1994; Jang and Sheen, 1994). However, models postulating that hexokinases play a role in Glc sensing that is separable from their role in Glc phosphorylation remain controversial and require further testing (Halford et al., 1999). Progress toward testing these models is provided by the recent identification of mutations that have differential effects on the hexose-sensing and phosphorylation activities of yeast hexokinase PII (Hohmann et al., 1999). In addition, transgenic Arabidopsis expressing a yeast hexokinase gene exhibit increased hexokinase catalytic activity, but are actually less sensitive to exogenous Glc (Jang et al., 1997). These findings suggest that it is possible to separate the Glc sensing and phosphorylation activities of hexokinases. Further identification and characterization of hexokinase mutants should help clarify the role of hexokinases in hexose sensing.

Although the debate over whether hexokinases act as sensors for some sugar-response pathways is likely to continue, the available evidence indicates that hexokinases are not involved in all plant sugar-response pathways. For example, expression of several genes is known to be regulated by Suc, but not by Glc, suggesting that hexokinases are not involved in sugar-regulated expression of these genes (Chiou and Bush, 1998; Rook et al., 1998; Loreti et al., 2000; Müller et al., 2000).

	SNF1-RELATED PROTEIN KINASES ACT AS "METABOLIC SENSORS"

TOP INTRODUCTION USE OF SUGAR ANALOGS... WHICH SUGAR ANALOGS ARE... DO HEXOKINASES ACT AS... SNF1-RELATED PROTEIN KINASES... IDENTIFYING SUGAR-RESPONSE... MANY SUGAR-RESPONSE MUTANTS ARE... MANY SUGAR-RESPONSE MUTANTS ARE... CONCLUSIONS LITERATURE CITED

The SNF1-related protein kinases represent a large family of proteins that are conserved among animals, fungi, and plants. Many organisms encode several SNF1-related protein kinases. In mammalian systems, SNF1-related protein kinases were first identified as key components of environmental stress-response pathways. In S. cerevisiae, SNF1 protein kinases are activated by Glc deprivation and play a central role in response to nutritional stress. Both environmental and nutritional stresses result in increased AMP:ATP ratios, suggesting that SNF1-related protein kinases may function as "metabolic sensors" that enable organisms to regulate metabolism and gene expression in response to changes in cellular energy status. Although less is known about the role(s) of SNF1-related protein kinases in plants, they are likely to be involved in response to nutritional and/or environmental stress (for review, see Hardie et al., 1998). A role for these proteins in plant sugar-response pathways is suggested by experiments in which antisense expression of a SNF1-related protein kinase gene in potato resulted in loss of sugar-inducible expression of Suc synthase (Purcell et al., 1998). A role for plant SNF1-related protein kinases in stress responses is similarly suggested by the finding that mutations in the Arabidopsis SOS2 gene, which encodes a protein that is similar in sequence to the yeast SNF1 protein kinase, lead to an osmo-sensitive phenotype (Liu et al., 2000). As plant SNF1-related protein kinases may function in both environmental stress and sugar responses, some apparent sugar responses may actually result from stimulation of an SNF1-mediated stress-response pathway, rather than induction of an SNF1-mediated sugar-response pathway.

Understanding how plant SNF1-related protein kinases act as metabolic sensors will require increased information regarding the regulation of these proteins and the identities of their substrates. Progress in this area has been rapid, with recent reports indicating Suc deprivation, cytokinin, and light increase transcript levels of a SNF1-related protein kinase from wheat (Ikeda et al., 1999). In addition, an SNF1-related protein kinase is up-regulated by ABA and inhibits gibberellin-induced expression of certain genes (Gómez-Cadenas et al., 1999). These findings suggest that phytohormones play an important role in some SNF1-mediated responses. Several SNF1-related protein kinase substrates have been identified. Proteins shown to be phosphorylated, and consequently inactivated, by SNF1-related protein kinases include 3-hydroxy-3-methylglutaryl coenzyme A reductase, nitrate reductase, and Suc phosphate synthase. As these enzymes play key roles in isoprenoid biosynthesis, nitrogen metabolism, and Suc synthesis, respectively, their inactivation by SNF1-related protein kinases provides a means by which these kinases may help regulate several major metabolic pathways (Sugden et al., 1999).

	IDENTIFYING SUGAR-RESPONSE MUTANTS

TOP INTRODUCTION USE OF SUGAR ANALOGS... WHICH SUGAR ANALOGS ARE... DO HEXOKINASES ACT AS... SNF1-RELATED PROTEIN KINASES... IDENTIFYING SUGAR-RESPONSE... MANY SUGAR-RESPONSE MUTANTS ARE... MANY SUGAR-RESPONSE MUTANTS ARE... CONCLUSIONS LITERATURE CITED

A powerful method for characterizing plant sugar responses is to identify and analyze mutants that are defective in one or more sugar responses. Sugar-response mutants can also serve as invaluable tools for identifying components of sugar-response pathways. In recent years, several laboratories have conducted genetic screens to identify plant sugar-response mutants (Table I). These screens have used Arabidopsis as a model system and have generally employed one of two approaches. One approach has been to screen for mutants that are defective in the expression of a particular sugar-regulated gene. Mutants isolated using this approach include the lba and hba mutants, which are defective in -amylase expression (Mita et al., 1997a, 1997b), the rsr mutants, which are defective in patatin expression (Martin et al., 1997), and the sun mutants, which are defective in plastocyanin expression (Dijkwel et al., 1997).

A second approach used to identify sugar-response mutants is to screen for altered sensitivity to the inhibitory effects of high concentrations of exogenous Glc or Suc on early seedling development. As shown in Figure 2, wild-type Arabidopsis seeds sown on media containing high (e.g. 0.3 M) concentrations of Suc germinate, but the majority of seedlings fail to develop green, expanded cotyledons or true leaves. High concentrations of exogenous Glc exert a similar effect. It is interesting that germinating seeds/seedlings are only sensitive to high sugar concentrations during the first approximately 48 h after the start of imbibition. This finding suggests that completion of some critical, but as yet unidentified, developmental or metabolic transition results in loss of susceptibility to high sugar concentrations (S. Gibson, R. Laby, and D. Kim, unpublished data).

View larger version (153K): [in this window] [in a new window]   Figure 2.   Effects of high concentrations of exogenous sugar on seedling development. Wild-type ArabidopsIs seedlings were grown on the indicated media for 16 d prior to photographing. The red bars indicate 2 mm.

The sugar-insensitive, or sis (Laby et al., 2000) and Glc-insensitive, or gin (Zhou et al., 1998; Arenas-Huertero et al., 2000), mutants exhibit reduced sensitivity to high sugar concentrations. As high concentrations of Suc and Glc inhibit wild-type seedling development, one of the first questions that arises is whether these mutants exhibit altered sensitivity to both sugars, or just to the one used in their selection. To date, there have been no reports regarding the response of gin mutants to Suc. However, the sis mutants have altered responses to both sugars (Laby et al., 2000; S. Gibson, D. Kim, L. Hoot, and R. Laby, unpublished data). These results suggest that Suc inhibits wild-type seedling development by being metabolized to Glc, thereby triggering a hexose-response pathway. Besides being insensitive to high concentrations of Glc and Suc, at least most of the sis and gin mutants also exhibit decreased sensitivity to the inhibitory effects of exogenous Man on early seedling development (Zhou et al., 1998; Laby et al., 2000).

In contrast to the sis and gin mutants, the pleiotropic regulatory locus 1 (prl1) mutant shows increased sensitivity to Glc and Suc (Németh et al., 1998). The PRL1 gene encodes a protein with sequences characteristic of WD-40 repeat proteins (Németh et al., 1998). It is interesting that the PRL1 protein interacts with the yeast SNF1 protein, as well as with two SNF1-related proteins from Arabidopsis, in a yeast two-hybrid system (Bhalerao et al., 1999). These results suggest that PRL1 may play an important role in one or more sugar-response pathways. However, as SNF1 and related proteins may act in stress responses, as well as in sugar responses, the possibility that PRL1 primarily functions in stress responses must also be considered (Gibson and Graham, 1999).

	MANY SUGAR-RESPONSE MUTANTS ARE OSMO-TOLERANT

TOP INTRODUCTION USE OF SUGAR ANALOGS... WHICH SUGAR ANALOGS ARE... DO HEXOKINASES ACT AS... SNF1-RELATED PROTEIN KINASES... IDENTIFYING SUGAR-RESPONSE... MANY SUGAR-RESPONSE MUTANTS ARE... MANY SUGAR-RESPONSE MUTANTS ARE... CONCLUSIONS LITERATURE CITED

As high concentrations of exogenous sugars were used to identify the prl1, sis, and gin mutants, an important question is whether these mutants are defective in their response to osmotic stress. When grown on concentrations of either mannitol or sorbitol that are equimolar to the Glc or Suc concentrations used in their selection (0.3-0.33 M), the gin1 (Zhou et al., 1998), sis1, 2, 4, and 5 (Laby et al., 2000; S. Gibson, D. Kim, L. Hoot, and R. Laby, unpublished data) mutants appear similar to wild-type plants. However, when grown on higher concentrations of sorbitol, the sis1, 2, 4, and 5 mutants display osmo-tolerant phenotypes during early seedling development (Laby et al., 2000; S. Gibson, D. Kim, L. Hoot, and R. Laby, unpublished data). Testing of the gin1 mutant at higher concentrations of sorbitol or mannitol has not been reported. The molecular basis for the osmo-tolerant phenotype of these mutants currently remains to be determined. One possibility is that mutants defective in the ability to sense and/or respond to sugar may accumulate unusually high concentrations of endogenous sugars, which could have an osmo-protectant effect.

Although most, and possibly all, mutants that are resistant to the inhibitory effects of high concentrations of exogenous sugars on early seedling development are also resistant to osmotic stress during the same developmental time period, several lines of evidence suggest that the mutants' sugar-response phenotypes are not simply a result of osmotic-stress tolerance. First, osmo-tolerant and sugar-response phenotypes are genetically separable, as some mutants, such as the abi2-1 mutant, that are osmo-tolerant exhibit normal sugar responses (Laby et al., 2000). In addition, at least most of the sugar-response mutants characterized to date are also resistant to the inhibitory effects of concentrations of Man (e.g. 1-4 mM) that are too low to exert an osmotic stress. Man is a Glc analog that has been postulated to inhibit seed germination via a hexokinase-mediated sugar-response pathway (Pego et al., 1999). However, Man metabolism has yet to be analyzed in Arabidopsis. Therefore, the possibility remains that hexokinase-mediated inhibition of Arabidopsis seed germination by Man is the result of Man-6-P being metabolized to form a toxic product, rather than of induction of a sugar-response pathway. As a result, the possibility that some sugar-response mutants may have relatively broad defects in stress responses, rather than being specifically defective in sugar responses, cannot be ruled out at this time.

	MANY SUGAR-RESPONSE MUTANTS ARE ALSO DEFECTIVE IN PHYTOHORMONE RESPONSE OR METABOLISM

TOP INTRODUCTION USE OF SUGAR ANALOGS... WHICH SUGAR ANALOGS ARE... DO HEXOKINASES ACT AS... SNF1-RELATED PROTEIN KINASES... IDENTIFYING SUGAR-RESPONSE... MANY SUGAR-RESPONSE MUTANTS ARE... MANY SUGAR-RESPONSE MUTANTS ARE... CONCLUSIONS LITERATURE CITED

Characterization of plant sugar-response mutants reveals that many of them also exhibit defects in phytohormone response or metabolism. For example, the prl1 mutant shows increased sensitivity not only to sugars, but also to ABA, ethylene, cytokinin, and auxin (Németh et al., 1998). In addition, the sis5 (Laby et al., 2000), sun6 (Huijser et al., 2000), and gin6 (Arenas-Huertero et al., 2000) mutants are allelic to the ABA-insensitive mutant abi4, and the sis4 (Laby et al., 2000) and gin1 (J. Sheen, personal communication) mutants are allelic to the ABA-biosynthesis mutant aba2 (Table I). It is interesting that mutations in the ABI5 gene, but not mutations in the ABI1, ABI2, or ABI3 genes also confer a weak sugar-insensitive phenotype (Arenas-Huertero et al., 2000; Huijser et al., 2000; Laby et al., 2000). These results are significant because they show that only mutations in specific ABI genes cause a sugar-insensitive phenotype. Only certain paclobutrazol-resistant mutants also display a sugar-insensitive phenotype. For example, the sis2 mutant is resistant to high concentrations of sugar and to paclobutrazol, an inhibitor of gibberellin biosynthesis. In contrast, the spy3 mutant is resistant to paclobutrazol, but not to high concentrations of sugar (D. Kim, L. Hoot, and S. Gibson, unpublished data). Mutants that over-produce ethylene or that exhibit a constitutive ethylene response also have sugar-insensitive phenotypes (Zhou et al., 1998; S. Gibson, R. Laby, and D. Kim, unpublished data).

The above results raise the question of how certain mutations might affect both sugar responses and phytohormone responses or metabolism. For example, how might mutations in the ABI4 gene lead to ABA and sugar-insensitive phenotypes? As shown in Figure 3, several different types of mechanisms are possible. Distinguishing between these mechanisms will require more information about ABA and sugar-response pathways than is currently available. One possibility is that ABA and Glc act in the same pathway, with either acting first (Fig. 3, A and B). For example, ABA might act via a signal transduction pathway that requires ABI4, but not ABI1, 2, or 3 to induce expression of a Glc sensor. Wild-type plants would then be expected to produce relatively low levels of the Glc sensor in response to endogenous ABA. Endogenous Glc might then act via the Glc sensor to cause low level activation of a pathway that slows early seedling development. Exogenous ABA or Glc might then lead to over-stimulation of this pathway, strongly inhibiting early seedling development. Plants carrying mutations in ABI4 would be ABA insensitive as a result of being unable to increase Glc sensor levels in response to ABA. These plants would also be Glc insensitive as a result of producing lower levels of the Glc sensor in response to endogenous ABA.

View larger version (25K): [in this window] [in a new window]   Figure 3.   Models for inhibition of early seedling development by Glc and ABA. Glc and ABA may inhibit seed germination and early seedling development via one of the following mechanisms, or by a combination of two or more of them. A, Glc and ABA may act in the same pathway, with ABA acting first. B, Glc and ABA may act in the same pathway, with Glc acting first. C, Glc and ABA may act via converging pathways. D, Glc and ABA may act via completely independent pathways.

Glc and ABA, alternatively, might act via pathways that are initially independent, but then converge (Fig. 3C). For example, Glc and ABA might act via independent pathways to induce expression of ABI4, thereby activating a pathway that slows early seedling development. Mutations in ABI4 would then lead to ABA- and Glc-insensitive phenotypes. The relationship between the converging pathways might also be less direct. For example, they might have complementary effects on second messenger levels. Glc and ABA might also act via completely independent pathways (Fig. 3D). For example, ABA (acting via a pathway that requires ABI4, but not ABI1, 2 or 3) and Glc might inhibit expression of different lipase genes involved in seed storage lipid mobilization. A mutation in ABI4 might then result in increased levels of the ABA-inhibited lipase, which could lead to a Glc-insensitive phenotype by compensating for decreased levels of the Glc-inhibited lipase in response to exogenous Glc.

The mechanism(s) by which phytohormones and sugars inhibit early seedling development are likely to be even more complex than suggested by the above models. First, these models describe responses to only a single phytohormone (ABA) and Glc, whereas several phytohormones, Glc, light, and other factors are involved in early seedling development. Second, more than one of the above models may be required to describe the mechanism(s) by which just one phytohormone and Glc affect early seedling development. In other words, ABA and Glc might each affect early seedling development via several response pathways. Some of these pathways might be involved in response to ABA and Glc, whereas others might be involved in response to only one of these factors. Precedent for this type of "combinatorial" model is provided by studies on the effects of ABA and gibberellin on seed germination. ABA and gibberellin are postulated to regulate seed germination via several pathways, some of which are responsive to both phytohormones and others of which are responsive to just one phytohormone. For example, ABA and gibberellin have antagonistic effects on Ca²⁺ levels, whereas only gibberellin acts via effects on cGMP levels (for review, see Lovegrove and Hooley, 2000).

	CONCLUSIONS

TOP INTRODUCTION USE OF SUGAR ANALOGS... WHICH SUGAR ANALOGS ARE... DO HEXOKINASES ACT AS... SNF1-RELATED PROTEIN KINASES... IDENTIFYING SUGAR-RESPONSE... MANY SUGAR-RESPONSE MUTANTS ARE... MANY SUGAR-RESPONSE MUTANTS ARE... CONCLUSIONS LITERATURE CITED

Plant development, physiology, and metabolism are regulated by input from a number of signaling/response pathways. These pathways include those involved in response to phytohormones, environmental stimuli, and metabolites such as sugars and nitrogen. In recent years it has become increasingly clear that the idea that plants respond to each of these stimuli via separate, linear pathways is over-simplified. Instead, many researchers feel it may be more useful to consider plant response pathways as forming an interconnected web. A signal that affects one part of the web can then affect other parts of the web, more or less strongly and directly. As a result, determining whether a mutation affects response to a particular stimulus by altering a factor that acts directly or indirectly in a response pathway for that stimulus, or by exerting a compensatory effect on a response pathway for a different stimulus, may be difficult.

Elucidation of sugar-response pathways, as well as characterization of the relationships between these pathways and other response pathways, will require much more extensive knowledge regarding the components of these pathways than is currently available. Isolation of more genes identified by sugar-response mutations represents an important step toward this goal. The availability of these genes will then make possible, for example, experiments designed to detect direct, physical interactions between the factors encoded by these genes, as well as regulation of one gene product by another. Use of high-density cDNA microarrays and similar technologies to identify genes regulated in response to a variety of stimuli will also help provide information critical to constructing models of plant response webs.

	ACKNOWLEDGMENTS

Dr. Ruth Finkelstein is thanked for several stimulating conversations. The many helpful suggestions made regarding this manuscript by Dr. Bonnie Bartel, Dr. Janet Braam, Lydia Hoot, and Donna Pattison are also gratefully acknowledged.

	FOOTNOTES

Received August 14, 2000; accepted September 20, 2000.

¹ This work was supported by the U.S. Department of Energy, Energy Biosciences Program (grant no. DE-FG03-00ER15061).

^* E-mail sig{at}bioc.rice.edu; fax 713-348-5154.

	LITERATURE CITED

TOP INTRODUCTION USE OF SUGAR ANALOGS... WHICH SUGAR ANALOGS ARE... DO HEXOKINASES ACT AS... SNF1-RELATED PROTEIN KINASES... IDENTIFYING SUGAR-RESPONSE... MANY SUGAR-RESPONSE MUTANTS ARE... MANY SUGAR-RESPONSE MUTANTS ARE... CONCLUSIONS LITERATURE CITED

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