|
|
||||||||
|
Plant Physiol, April 2001, Vol. 125, pp. 1941-1948 Expression of D-myo-Inositol-3-Phosphate Synthase in Soybean. Implications for Phytic Acid Biosynthesis1Department of Plant Pathology, Physiology, and Weed Science, Fralin Biotechnology Center, Virginia Polytechnic Institute and State University, Blacksburg, Virginia 24061-0346
Phytic acid, a phosphorylated derivative of myo-inositol, functions as the major storage form of phosphorus in plant seeds. Myo-inositol phosphates, including phytic acid, play diverse roles in plants as signal transduction molecules, osmoprotectants, and cell wall constituents. D-myo-inositol-3-phosphate synthase (MIPS EC 5.5.1.4) catalyzes the first step in de novo synthesis of myo-inositol. A soybean (Glycine max) MIPS cDNA (GmMIPS1) was isolated by reverse transcriptase-PCR using consensus primers designed from highly conserved regions in other plant MIPS sequences. Southern-blot analysis and database searches indicated the presence of at least four MIPS genes in the soybean genome. Northern-blot and immunoblot analyses indicated higher MIPS expression and accumulation in immature seeds than in other soybean tissues. MIPS was expressed early in the cotyledonary stage of seed development. The GmMIPS1 expression pattern suggested that it encodes a MIPS isoform that functions in seeds to generate D-myo-inositol-3-phosphate as a substrate for phytic acid biosynthesis.
Nutrient reserves accumulate during
seed development for remobilization during germination and early
seedling growth. Phosphorus in seeds is stored primarily in the form of
phytic acid (phytate, myo-inositol hexakisphosphate,
InsP6), which is a derivative of inositol. During
seed development phytic acid is deposited in spherical inclusions known
as globoids or as complexes with seed storage proteins in protein
bodies (Prattley and Stanley, 1982 As a component of animal feed, phytate from seeds compromises the
availability of dietary phosphorus because non-ruminants lack the
digestive enzymes to hydrolyze phytic acid. The negatively charged
phytic acid molecule also chelates other mineral nutrients, which
lowers their bioavailablity. In addition to the nutritional effects of
phytate in animal diets, there are also environmental consequences.
Undigested phytic acid is excreted in manure, which leads to elevated
soil phosphorus levels when manure is applied repeatedly as fertilizer
in areas of livestock production. High soil phosphorus levels, coupled
with the potential for run-off, can lead to environmental phosphorus
pollution and eutrophication (Sharpley et al., 1994 Myo-inositol is a precursor to compounds in plants that
function not only in phosphorus storage, but also in signal
transduction, stress protection, hormonal homeostasis, and cell wall
biosynthesis (for review, see Morré et al., 1990 The first step in the synthesis of myo-inositol is the
conversion of D-Glc-6-P to
D-myo-inositol-3-phosphate by the isomerase D-myo-inositol-3-phosphate synthase (MIPS). The
proposed phytic acid biosynthetic pathway (Loewus and Murthy, 2000
MIPS sequences comprise gene families in some plant species. In maize,
seven sequences hybridizing to a MIPS probe were mapped to different
chromosomes (Larson and Raboy, 1999 We report the isolation of a MIPS cDNA from developing soybean (Glycine max) seeds. The genomic organization of soybean MIPS genes and the structure of the gene corresponding to the isolated MIPS cDNA were examined. At least four different MIPS sequences were identified from the soybean expressed sequence tag (EST) database and Southern hybridization results. Patterns of MIPS expression were analyzed in developing soybean seeds and other plant tissues. Together, these data suggest that we have isolated a member of a MIPS gene family that is abundantly expressed in developing soybean seeds to function in phytic acid synthesis.
Isolation and Analysis of a MIPS cDNA A MIPS cDNA (GmMIPS1) was isolated from developing
soybean seeds using reverse transcriptase- (RT) PCR (Fig.
2). The 1,791-bp cDNA sequence
contained a 1,533-bp open reading frame that could encode a
protein of 510 amino acids. The putative soybean MIPS protein has a
predicted molecular mass of 56.5 kD. BLAST database searches were
performed with the MIPS cDNA sequence and predicted protein sequence
(Altschul et al., 1997
MIPS Gene Structure and Organization An estimate of MIPS sequence copy number was determined by Southern-blot analysis. Under stringent conditions, multiple high-Mr bands were detected using the full-length cDNA as the MIPS hybridization probe (Fig. 3). The data indicated that the soybean genome contains four or more loci with MIPS homology.
A MIPS genomic sequence corresponding to GmMIPS1 was generated by PCR amplification and was compared with the cDNA sequence for assignment of exons and introns. The region encompassing the start (ATG) to stop (TGA) codons in the genomic PCR product consisted of 2,607 bp containing nine introns (Fig. 2A). Sequence analysis revealed that restriction sites for EcoRI, HindIII, and XbaI were absent in the genomic sequence. Genomic restriction fragments generated by the three enzymes were larger than the size of the genomic PCR product, consistent with the lack of these sites in the sequence (Fig. 3). Due to the high degree of sequence similarity among plant MIPS genes, high stringency hybridization did not reveal which fragment corresponded to the cloned GmMIPS1 sequence. Analysis of Soybean cDNAs with Homology to MIPS The GmMIPS1 cDNA sequence was compared with soybean ESTs that have been identified as putative MIPS sequences in a soybean database, SoyBase (R. Shoemaker, U.S. Department of Agriculture-Agricultural Research Service, Iowa State University). Analysis of the large number of soybean cDNA sequences with MIPS homology facilitated assignment of the ESTs to four highly similar, yet distinct MIPS sequences (GmMIPS1-GmMIPS4) as shown in Table I. (The complete GmMIPS1 sequence and alignment with other MIPS family members from the EST database, as well as EST accession nos., are shown in online supplementary material.) The GmMIPS1 cDNA isolated from immature seeds in these studies was identical to the EST sequences obtained from several immature cotyledon libraries. The majority of ESTs from GmMIPS2 originated primarily from root libraries, but also included sequences from shoot, flower, and seed coat libraries. GmMIPS1 and GmMIPS2 showed 96% identity over a span of 1,465 nucleotides and shared a very similar 3'-untranslated region. The EST sequences corresponding to GmMIPS3 were derived predominantly from flower libraries, but were also found in leaves, buds, and germinated cotyledons. Only two ESTs were assigned to GmMIPS4 (from buds and young pods). GmMIPS4 sequences were similar to GmMIPS3 in coding and 3'-untranslated sequences. In addition to the soybean cDNAs that were assigned to GmMIPS1 through GmMIPS4, there were several individual cDNAs in the EST database that could not be placed with any other sequences.
The data from the soybean EST project facilitated the generation of an "electronic northern," which served as a predictive first step in determining the expression patterns of MIPS gene family members (Table I). The frequency of GmMIPS1 EST sequences and the derivation of these GmMIPS1 sequences from immature cotyledons suggests that GmMIPS1 is abundantly expressed early in seed development, perhaps to serve in phytic acid biosynthesis. Soybean MIPS RNA Expression Northern-blot analyses were performed with total RNA from
different soybean tissues and various stages of seed development using
the GmMIPS1 cDNA as the hybridization probe (Fig.
4). Steady-state RNA levels were higher
in developing seeds than in other soybean tissues, including flowers,
leaves, roots, germinating cotyledons, and somatic embryos (Fig. 4A).
MIPS transcript was observed in cotyledons at the earliest
developmental stages analyzed, 0 to 2 mm (corresponding in size up to
approximately stage C; Meinke et al., 1981
Immunodetection of Soybean MIPS Western-blot analyses were performed to further corroborate the
pattern of MIPS expression. To produce an antibody for immunodetection studies, a MIPS fusion protein construct was generated by insertion of
a PCR product into an expression vector containing a His tag. After
demonstrating that the fusion protein was successfully expressed in
bacterial cells, the vector was used for large-scale protein expression
and antibody production (Styer, 2000
The pattern of MIPS expression observed in developing soybean seeds was
consistent with the expectation that high levels of MIPS expression
should precede and/or accompany synthesis and accumulation of phytic
acid. In rice, recent studies demonstrated a clear relationship between
patterns of MIPS expression and accumulation of phytic acid (Yoshida et
al., 1999 Raboy and Dickinson (1987) Potential for Seed-Specific MIPS Isoforms Further evidence for seed-specific MIPS expression is provided by
studies on low phytic acid (lpa) mutants in maize. Reduction in phytate levels by 50% to 95% has been achieved in lpa
mutants following ethyl methanesulfonate mutagenesis (Larson and
Raboy, 1999 The association between the MIPS gene and the lpa phenotype
is less clear in other cereals. The lpa-1 mutations in
barley and rice mapped to chromosomes 2H and 2L, respectively (Larson et al., 1998 In Arabidopsis, two distinct MIPS sequences were identified (Johnson,
1994 Compared with Arabidopsis, soybean has a greater capacity for nutrient
storage in the seed. The amount of phytate stored in soybean seeds may
exceed levels required for normal seed function. Raboy et al. (1985) Alteration of the MIPS gene is a potential approach for the development
of low-phytic acid soybeans (Hitz and Sebastian, 1998 Summary Our MIPS RNA and protein expression data suggest that GmMIPS1 expression is under the control of a strong, developmentally regulated promoter in immature seeds. This is further supported by the fact that the GmMIPS1 ESTs are abundant and derived primarily from cDNA libraries from immature cotyledons. The observation of at least four bands by high stringency Southern-blot analysis is consistent with the presence of four loci containing highly similar MIPS sequences in the soybean genome. It is likely that GmMIPS1 is expressed most strongly in seeds and plays a critical role in phytic acid biosynthesis, whereas the other three soybean MIPS genes may be involved in other aspects of inositol metabolism. Differential regulation of multiple genes would allow specific MIPS expression during periods of high demand for inositol, such as would be expected during phytic acid accumulation in seed development. Closer examination of the expression of these sequences in plant tissues using sensitive methods such as differential RT-PCR will aid in elucidating the multiple roles for MIPS in plant cells.
Plant Material Soybean (Glycine max L. Merr. cv Williams 82)
plants were grown in an environmental chamber (Conviron, Pembina, ND)
in 24 h of light until approximately 8 weeks of age and were then
transferred to a 16-h light/8-h dark cycle to induce flowering. Somatic
embryos were initiated from immature soybean cotyledons and were
maintained on D20 medium (Finer, 1988 DNA and RNA Extraction DNA for restriction endonuclease digestion and Southern-blot
analysis was isolated as described by Dellaporta et al. (1983) Isolation and Analysis of cDNA and Genomic Sequences A soybean MIPS cDNA was isolated from developing seeds using a
PCR approach that was based on conservation of MIPS coding sequences
among plant species. A multiple sequence alignment of several
previously reported plant MIPS cDNA sequences from GenBank (Arabidopsis, Phaseolus vulgaris, oilseed rape,
Spirodela polyrrhiza, and common ice plant) was
performed using the Clustal method (Thompson et al., 1994 Oligo-dT-primed cDNA synthesis was performed with 5 µg of total RNA from pooled seeds using Superscript II reverse transcriptase (3'-RACE system, Life Technologies, Rockville, MD). PCR reactions (50 µL) were assembled with Taq Master Mix according to the manufacturer's recommendations (Qiagen) and amplification was performed with a Robocycler Gradient 40 thermocycler (Stratagene, La Jolla, CA). An initial 496-bp MIPS PCR product was cloned into the SmaI site of pTZ19R (Fermentas, Hanover, MD). Dideoxy sequencing was performed using the Sequitherm Excel II kit (Epicenter Technologies, Madison, WI). RACE was used to amplify the 5' and 3' ends of the soybean MIPS cDNA sequence (Life Technologies). A 412-bp PCR product from the 3' end of the MIPS cDNA was cloned into the SmaI site of pTZ19R and was sequenced as described above. The 5' end of the MIPS cDNA was amplified in two rounds of 5'-RACE. PCR products of 836 and 295 bp were cloned into the SmaI site of pTZ19R and were sequenced. The sequences from the overlapping MIPS cDNA fragments were assembled into a contiguous sequence using the program SeqMan (DNAstar). A 1,551-bp product containing the full-length MIPS cDNA was amplified by high-fidelity PCR (Pfu polymerase; Stratagene) and cloned into the SmaI site of pTZ19R. The MIPS sequence was submitted to GenBank (accession no. AF293970). DNA from soybean hypocotyls was utilized as a template for amplifying a genomic product spanning the MIPS coding region and was sequenced at the Virginia Polytechnic Institute and State University Sequencing Facility. DNA- and RNA-Blot Analyses DNA samples (10 µg) were digested with restriction enzymes,
separated by agarose gel electrophoresis, and transferred onto a nylon
membrane (Schleicher & Schuell, Keene, NH). For use as a hybridization
probe, a DNA fragment containing the full-length MIPS coding sequence
was gel purified and labeled with The expression of the MIPS gene in developing seeds and other tissues was analyzed by northern-blot hybridization. RNA (10 µg) from staged developing seeds and other soybean tissues (germinated cotyledons, young roots, somatic embryos, young leaves, and flowers) was separated by formaldehyde agarose gel electrophoresis (1.2% [w/v] agarose) prior to transfer to nylon membranes (Schleicher & Schuell). Duplicate sets of lanes were loaded and one set was stained with ethidium bromide to confirm sample integrity and equal loading of samples. The blots were probed and washed as described for Southern hybridizations. Detection of hybridizing RNA bands was performed using the phosphorimager as described above. Protein Expression and Immunoblot Analyses For high-level bacterial expression and subsequent protein
purification, a fragment containing the majority of the MIPS coding sequence was fused in frame to a 6× His sequence in the expression plasmid pET-32a (+) (Novagen, Madison, WI). A 1,425-bp portion of the
MIPS cDNA encoding amino acid residues 24 to 498 was amplified by
high-fidelity PCR from a MIPS cDNA and was cloned into the pET-32a (+)
vector. The resulting plasmid was introduced into the bacterial strain
BL21 (DE3) pLysS (Novagen). The constructs were provided to the
laboratory of Dr. Glenda Gillaspy (Virginia Polytechnic Institute and
State University) for production and purification of the MIPS fusion
protein (Styer, 2000 Total protein was extracted from developing seeds, flowers, germinating
cotyledons, leaves, roots, and somatic embryos. Immature seed samples
were grouped by developmental stages as described previously (Meinke et
al., 1981 For immunodetection of MIPS, protein extracts were subjected to SDS-PAGE and were subsequently transferred to membranes according to manufacturer's specifications (Bio-Rad). Membranes were incubated with primary antibody and secondary (horseradish peroxidase conjugated goat-anti-rabbit; Sigma) antibody at 1:10,000 dilutions. Protein bands were detected using the chemiluminescent enhanced chemiluminescence Plus Western Blotting Detection System according to the manufacturer's specifications (Amersham Pharmacia Biotech, Piscataway, NJ).
We thank Regina Hanlon for excellent technical assistance, and John McDowell and Craig Nessler for critical review of the manuscript.
Received September 12, 2000; returned for revision November 13, 2000; accepted January 9, 2001. 1 This work was supported in part by the U.S. Department of Agriculture National Research Initiative Competitive Grants Program (grant no. 97-35504-4997).
2 Present address: Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853.
* Corresponding author; e-mail egrabau{at}vt.edu; fax 540- 231-7126.
This article has been cited by other articles:
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH | TABLE OF CONTENTS |
| ASPB Publications | PLANT PHYSIOLOGY® | THE PLANT CELL | |
|---|---|---|---|