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Plant Physiol, April 2001, Vol. 125, pp. 2180-2188
Class III Pistil-Specific Extensin-Like Proteins from Tobacco
Have Characteristics of Arabinogalactan Proteins
Maurice
Bosch,*
Jens Sommer
Knudsen,
Jan
Derksen, and
Celestina
Mariani
Graduate School of Experimental Plant Sciences, Department of
Experimental Botany, University of Nijmegen, Toernooiveld 1, 6525 ED Nijmegen, The Netherlands (M.B., J.D., C.M.); and Cooperative
Research Centre for Bioproducts, School of Botany, University of
Melbourne, Parkville 3052, Australia (J.S.K.)
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ABSTRACT |
Class III pistil-specific extensin-like proteins (PELPIII) are
specifically localized in the intercellular matrix of tobacco (Nicotiana tabacum) styles. After pollination the
majority of PELPIII are translocated into the callosic layer and the
callose plugs of the pollen tubes, which could suggest a function of
PELPIII in pollen tube growth. PELPIII may represent one of the
chemical and/or physical factors from the female sporophytic tissue
that contributes to the difference between in vivo and in vitro pollen tube growth. PELPIII glycoproteins were purified and biochemically characterized. Because of their high proline (Pro) and hydroxy-Pro (Hyp) content, PELPIII proteins belong to the class of Pro/Hyp-rich glycoproteins. The carbohydrate moiety of PELPIII is attached through
O-glycosidic linkages and comprises more than
one-half the total glycoprotein. Deglycosylation of PELPIII revealed
two backbones, both reacting with PELPIII-specific antibodies.
N-terminal amino acid sequencing of these backbones showed that PELPIII
is encoded by the MG14 and MG15 genes.
Two heterogeneous N-terminal sequences of MG14 and
MG15, both starting downstream of the predicted signal
peptide cleavage site, seem to be present, which indicates a novel
N-terminal processing. Monosaccharide analysis showed that the
carbohydrate moiety of PELPIII almost completely consists of arabinose
and galactose in an equal molar ratio. Carbohydrate linkage analysis
showed terminal and 2-linked arabinofuranosyl residues, as well as
terminal and 6-, 3-, and 3,6-linked galactopyranosyl residues to be
present, indicating the presence of both extensin-like and Type II
arabinogalactan oligosaccharide units. The ability of -glucosyl
Yariv reagent to bind with PELPIII confirmed the arabinogalactan
protein-like characteristics of these proteins.
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INTRODUCTION |
The ultimate goal of pollination in
angiosperms is the delivery of the male gametes of the pollen to the
female gametophyte in the ovule. In many angiosperms, such as tobacco
(Nicotiana tabacum), a pistil separates the ovule from the
landing site (stigma) of the pollen. Upon germination, pollen extrudes
a tube that grows toward the ovary through the intercellular matrix
(IM) of the stylar transmitting tissue of the pistil. Apart from
providing a physical pathway for the pollen tubes, transmitting tissue
cells are also involved in providing appropriate physiological
conditions for the growth of compatible pollen by secreting molecules
such as free sugars, amino acids, fatty acids, lipids, polysaccharides, and glycolipids into the IM (Knox, 1984 ). It has been proposed that
these IM components might function in a variety of processes related to
pollen tube growth such as nutrition, protection/defense, guidance, and
signaling (Sanders and Lord, 1992 ; Cheung et al., 1995 ). Biochemical
and molecular analyses of secreted proteins found in the IM and their
genes or cDNAs led to the identification of several hydroxy-Pro
(Hyp)-rich glycoproteins (HRGPs), including arabinogalactan proteins
(AGPs), extensin-like glycoproteins, and Pro/HRGPs (P/HRGPs; Chen et
al., 1992 ; Goldman et al., 1992 ; Cheung et al., 1993 ; Wu et al., 1993 ;
Lind et al., 1994 ; Du et al., 1996 ; Sommer-Knudsen et al., 1996 ). The
biological function of most of these pistil-specific glycoproteins has
not yet been established, although some involvement in pollen tube
growth has been reported for some of these proteins (Cheung et al.,
1995 ; Lind et al., 1996 ; Sommer-Knudsen et al., 1998b ).
A class of genes encoding for the class III pistil-specific
extensin-like proteins (PELPIII) was isolated from tobacco and subsequently characterized at the mRNA level (Goldman et al., 1992 ).
The PELPIII mRNA comprises at least two members (MG14 and MG15) localized specifically in the transmitting tissue
cells of the tobacco style. Immunoblot and immunolocalization
experiments demonstrated that the accumulation of PELPIII in the pistil
transmitting tissue begins during the early stages of pistil
maturation. At flower anthesis the proteins are located in the stylar
IM of non-pollinated pistils. After pollination the majority of the
PELPIII are translocated into the callosic layer and the callose plugs
of the pollen tubes (de Graaf, 2000 ). These observations suggest that
the biological function of PELPIII directly or indirectly relates to
pollen tube growth. In this paper we describe the purification and the
biochemical characterization of PELPIII and show that these proteins
have both extensin- and AGP-like properties. Our results provide a better insight into the nature of this class of proteins and are important in elucidating the function of these proteins in the stylar
transmitting tissue.
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RESULTS |
Purification of PELPIII
Total stylar protein extracts were prepared using buffers of
various pH and salt concentrations, and extracts were tested for the
presence of PELPIII. Phosphate buffers supplemented with increasing
concentrations of NaCl did not result in an increase in the amount of
extracted PELPIII (data not shown). A comparison of the stylar proteins
that can be extracted with a citric acid buffer (84 mM
citric acid, 2 mM
Na2S2O4,
and 15 mM -mercaptoethanol [pH 3]; Cheung et al.,
1995 ) and a phosphate buffer (50 mM sodium phosphate and 15 mM -mercaptoethanol [pH 6]) is shown in Figure 1. The use of the citric acid buffer had
a 2-fold advantage because it released absolute and relatively higher
quantities of PELPIII. Densitometric measurements of equal amounts
of protein extract showed at least four times more PELPIII after
extraction with citric acid buffer than with the phosphate buffer. This
property of the citric acid buffer has also been described for other
Pro-rich glycoproteins (Cheung et al., 1995 ; Sommer-Knudsen et al.,
1998b ). The alkaline character (pI 9) and the high
Mr of these proteins (Fig. 1) led us to
apply a procedure by which PELPIII was purified in three sequential
chromatographic steps: cation exchange chromatography on sulfopropyl
Sepaharose, gel filtration chromatography on superose 12, and a cation
exchange chromatography on methyl-sulfonate (Fig. 2). SDS-PAGE and immunoblot detection
analysis of PELPIII showed that the glycoproteins migrate as a smear
from 110 to 140 kD (Fig. 2, B and C).

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Figure 1.
Extraction of PELPIII from the stylar tissue of
tobacco. Tobacco styles were extracted with 84 mM citric
acid and 2 mM
Na2S2O4
(pH 3; Cheung et al., 1995 ) and 50 mM sodium phosphate (pH
6). Both buffers contained 15 mM -mercaptoethanol. Each
extract (5 µg) was fractionated on a 10% (w/v)
polyacrylamide gel and stained with Coomassie (A) or electroblotted
onto nitrocellulose and immunostained with the antibodies raised
against PELPIII (B).
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Figure 2.
Purification of PELPIII from tobacco styles. A,
Chromatographs of the three purification steps. The fractions in the
gray area were pooled for the next purification step. I, Cation
exchange chromatography on SP Sepharose after buffer exchange of the
citric acid protein extract into 50 mM sodium phosphate (pH
6). Eluent A, 50 mM sodium phosphate (pH 6); eluent B, 50 mM sodium phosphate (pH 6) + 1 M NaCl.
Gradient: 0% to 100% (v/v) eluent B. II, Superose 12 gel
filtration chromatography using 50 mM sodium phosphate (pH
6) as eluent. III, Methyl sulfonate cation exchange chromatography.
Same conditions as in I. B, 10% (w/v) SDS-polyacrylamide gel
of the pooled fractions. Proteins were detected by Coomassie staining.
C, Immunostaining of the corresponding western blot using the PELPIII
antibody.
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Amino Acid Analysis
The amino acid composition of the purified PELPIII is shown
in Table I. The values obtained from the
amino acid analysis were almost identical to those deduced from the
MG14 and MG15 cDNA clones (Goldman et al., 1992 ).
Hyp (18.9 mol%) and Pro (13.5 mol%) were the most abundant amino
acids, followed by Leu (9.0 mol%), Lys (8.8 mol%), and Ser (7.6 mol%). Of the original Pro residues (32.4 mol%), 58% was
posttranslationally modified to Hyp.
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Table I.
Comparison of the amino acid composition of purified
PELPIII with the amino acid composition derived from the MG14 and MG15
cDNA clones (described by Goldman et al., 1992 )
nd, Not determined. The amino acid composition of MG15 was deduced
after cleavage at the predicted signal peptide cleavage site (Fig. 3).
For MG14, the whole cDNA clone was used to deduce the amino acid
composition (Fig. 3).
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The deduced amino acid compositions of MG14 and MG15 did not change
significantly when the downstream N-terminal processing sites, as
revealed by N-terminal amino acid sequencing (Table II; Fig.
3), were taken into account for the
calculations.
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Table II.
N-Terminal sequencing results of the two backbone
bands after deglycosylation
, Matching with MG14;
, matching with MG15;
, matching both MG14 and MG15.
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Figure 3.
Deduced amino acid sequences of the PELPIIIcDNA
clones MG14 and MG15. The predicted signal
peptide cleavage site is denoted by . The N-terminal sequences
obtained from amino acid sequencing are shown in the gray boxes
. Shows the corresponding
cleavage sites that would generate these N-terminal sequences.
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Deglycosylation
The high content of Hyp and Ser, both of which can be
O-glycosylated, the running pattern on SDS-PAGE (110-140
kD) versus the predicted backbone size of 42 kD, and the ability of
periodic acid to stain the purified protein (data not shown) indicate
that these proteins are extensively glycosylated. Removal of the
O-linked glycans by chemical deglycosylation with
trifluoromethanesulphonic acid (TFMS) resulted in two backbones that
migrated at about 50 and 60 kD on SDS-PAGE (Fig.
4A). Deglycosylation with anhydrous hydrogen fluoride (HF) gave the same results. No decrease in
Mr could be seen when both the native and
the chemically deglycosylated PELPIII were treated with
N-glycosidase F (data not shown).

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Figure 4.
Chemical deglycosylation of PELPIII.
Native PELPIII proteins were chemically deglycosylated with
TFMS and fractionated on a 10% (w/v) polyacrylamide gel and
stained with silver (A) or electroblotted to nitrocellulose and
immunostained with the PELPIII antibody (B). Both silver staining
and immunodetection of the deglycosylated proteins show the presence of
two backbones (Mr of 50 and 60).
Lanes were loaded with 0.5 to 3 µg of protein. M,
Mr marker.
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Both backbones reacted with the PELPIII antibody (Fig. 4B). The
observation that neither of the two backbones migrated at the predicted
42 kD may be explained by the fact that SDS does not bind as well to
proteins with a high content of Hyp (Desai et al., 1983 ) and therefore
has a slower electrophoretic mobility than expected for its size
(Gleeson et al., 1989 ).
Amino Acid Sequencing
To address the nature of the two backbones present after
deglycosylation of PELPIII, we subjected both bands to N-terminal amino
acid sequencing. The N-terminal amino acids obtained are listed in
Table II. The fact that each band (Fig. 4) turned out to be a
mixture of two backbones made unambiguous assignments difficult.
However, by comparison with the amino acid sequences deduced from the
cDNA clones (MG14 and MG15), we were able to establish that the 50-kD and 60-kD bands resulting from chemical deglycosylation both consist of MG14 and MG15
gene products (Table II). Figure 3 shows the position of the sequences
obtained in these two members of PELPIII. The N-terminal sequence of
the 60-kD band started with Glu-4 of MG14 and Asp-39 of MG15. This is
in contrast with the predicted signal peptide cleavage site, which would result in an N-terminal sequence starting with Lys-24 of MG15 (5'
sequence of the MG14 cDNA clone is missing). The 50-kD band
started with Pro-76 of MG14 and Leu-109 of MG15. The difference of 73 and 70 amino acids, respectively, between the N termini of MG14 and
MG15 in both protein backbones matches the
Mr difference of about 7 kD between these
two bands. Two independent deglycosylation steps and subsequent amino
acid sequencing gave the same results. The reproducibility and
specificity of the two backbones on SDS gel, together with the fact
that deglycosylation with either TFMS or anhydrous HF resulted in the
same protein backbones, suggest that acid hydrolysis of the proteins
did not occur.
Carbohydrate Analysis
To determine the nature of the carbohydrate moiety of PELPIII, we
performed both monosaccharide analysis and carbohydrate linkage
analysis. The monosaccharide composition of PELPIII is shown in Table
III. The carbohydrate part consisted
predominantly of Ara (48 mol%) and Gal (50 mol%) in almost equal
amounts. Glc (2 mol%) was also present, but in such a small amount
that its presence was probably due to contamination. The absence of
GlcNAc is in agreement with the presence of only O-linked
glycans. The linkage composition of the monosaccharide residues showed
terminal and 2-linked arabinofuranosyl residues as well as terminal and 6-, 3-, and 3,6-linked galactopyranosyl residues (Table
IV). The ratio of branching
3,6-galactosyl residues, linear (non-branching) residues and terminal
residues was approximately 1:2:2.5. The presence of low levels of
1,2,3,5-linked Araf and 1,2,3,4,6-linked Galp is
probably due to slight undermethylation of the PELPIII glycoprotein.
Binding to -Glucosyl Yariv Reagent
Classical AGPs have been defined as being rich in Ara and Gal and
containing high levels of Ala, Ser, and Hyp. In addition, an often-used
criterion for defining whether a protein can be classified as an AGP is
its ability to bind -glucosyl Yariv reagent (Yariv et al.,
1967 ; Fincher et al., 1983 ; Baldwin et al., 1993 ). Figure
5 shows that the purified PELPIII reacted
strongly with -glucosyl Yariv reagent, which indicates that these
proteins have at least some AGP-like properties.

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Figure 5.
Protein blot stained with -glucosyl Yariv
reagent. Lane A, Purified PELPIII (3 µg); lane B, stylar proteins (5 µg) extracted with the citric acid buffer; lane C, Gum Arabic AGP (2 µg); M, Prestained Mr marker.
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DISCUSSION |
Based on the amino acid sequence deduced from the MG14
and MG15 cDNA clones PELPIII were described as chimeric
proteins containing a Pro-rich extensin-like domain and a non-Pro-rich
C-terminal domain (Fig. 3; Goldman et al., 1992 ). Amino acid analysis,
after a purification of PELPIII based on solubility, charge properties, and Mr, showed that these proteins are rich
in both Pro (13.6 mol%) and Hyp (18.9 mol%). As such they belong to
the HRGPs. This family includes extensins, P/HRGPs, AGPs, and
solanaceous lectins (Showalter, 1993 ). Many proteins, however, cannot
be assigned to one class only, as they may share motifs and properties
usually attributed to one or more different classes (Kieliszewski and Lamport, 1994 ; Sommer-Knudsen et al., 1998a ). The low Tyr content (3 mol%) and the low number (four-five) of repeating
Ser-Pro4 motifs distinguishes PELPIII from the
extensins (6-15 mol% Tyr, high no. of Ser-Pro4
motifs; Showalter and Varner, 1989 ). The observation that the synthetic
chromophore -glucosyl Yariv phenylglycoside ( -D-Glc)3 (Yariv et al., 1962 )
binds to the purified PELPIII (Fig. 5) showed that these proteins have
AGP-like characteristics. AGPs are implicated in many aspects of plant
growth and development, including cell fate, cell proliferation, and
cell expansion, but other functions like protection and nutrition have
also been proposed (Knox, 1995 ; Du et al., 1996 ; Ding and Zhu, 1997 ;
Nothnagel, 1997 ; Cheung and Wu, 1999 ; Majewska-Sawka and Nothnagel,
2000 ). The AGP family can be divided into two classes designated as
"classical" AGPs and "nonclassical" AGPs (Du et al., 1996 ).
"Classical" AGPs contain a hydrophobic transmembrane domain at
their C terminus, which in the mature AGPs is replaced by a
glycosylphosphatidylinositol lipid anchor (Schultz et al., 1998 ; Youl
et al., 1998 ; Oxley and Bacic; 1999 ; Majewska-Sawka and Nothnagel,
2000 ). They also tend to have a neutral to acidic protein backbone and
a protein content typically lower than 10% by weight and rich in
Hyp/Pro, Ala, and Ser/Thr (Fincher et al., 1983 ; Showalter, 1993 ; Du et
al., 1996 ). PELPIII has a rather hydrophilic C terminus, a basic
protein backbone, a protein content between 35% and 50%, and a low
Ala content. As such these glycoproteins can be classified as P/HRGPs
with characteristics of "nonclassical" AGPs.
In recent years more evidence has appeared that indicates that
oligosaccharide units of glycoconjugates, such as glycoproteins, proteoglycans, and glycolipids, play an important role in a broad range
of biological processes, such as providing signals for cell surface
recognition as well as providing structural, protective, and
stabilizing features (Kobata, 1992 ; Varki, 1993 ). As a consequence, we
further analyzed the carbohydrate moiety of PELPIII. The carbohydrate moiety of PELPIII consists predominantly of Ara and Gal in a 1:1 molar
ratio (Table III). The carbohydrate linkage characteristics shown in
Table IV suggest that the PELPIII proteins have AGP-like carbohydrate
chains, typically composed of mainly -(1-3)-galactan chains with
-(1-6)-galactosyl side chains terminated primarily with arabinosyl
residues (Fincher et al., 1983 ), as well as extensin-like carbohydrate
chains due to the presence of 1,2-linked Ara residues (Fong et al.,
1992 ). The presence of eight 1,3,6-linked Gal branching residues for
every three 1,3-linked Gal residues suggests that the galactosyl
residues are arranged in highly branched chains, as was also suggested
for the style-specific 120-kD glycoprotein characterized in
Nicotiana alata (Lind et al., 1994 ).
Amino acid sequencing showed the presence of two distinct peptides,
which indicates that both the MG14 and MG15 genes
are transcriptionally active and that both transcripts are translated. This corresponds with the Southern analysis data showing that PELPIII
is encoded by a small gene family composed of two or three members (de
Graaf, 2000 ). The MG14 and MG15 gene products
each seem to have two heterogeneous N-terminal sequences, both starting downstream of the site predicted from signal sequence cleavage analysis
(Fig. 3). This could derive from nonspecific cleavage of peptide bonds
during chemical deglycosylation, as described previously by Vogeler et
al. (1990) . Proteolytic cleavage has also been suggested for negatively
charged (rich in Glu and Asp) N-terminal regions that may be highly
exposed to the solvent (Van Beeumen et al., 1993 ). The absence
of low-Mr products after deglycosylation argues against nonspecific hydrolysis of the protein backbone. In
addition, the lack of a negatively charged N terminus, together with
the reproducible appearance of the two backbones after chemical deglycosylation using TFMS and anhydrous HF, also indicate that nonspecific hydrolysis did not occur. Together, these observations could imply a novel type of N-terminal processing of PELPIII proteins. Unusual posttranslational processing of backbones has also been proposed to occur at the N and C terminus for other HRGPs (e.g. Mau et
al.; 1995 , Schultz et al., 1997 ). These findings suggest that such
processing may be more common than previously thought and could be
important for their function.
There are several P/HRGPs in the styles of tobacco and N. alata with an architecture comparable to that of PELPIII (for
references, see Cheung et al., 1993 ; Lind et al., 1994 ; Sommer-Knudsen
et al., 1996 ; Schultz et al., 1997 ). The protein that shows most resemblance to PELPIII is the N. alata 120-kD glycoprotein.
Comparison of the predicted backbone encoded by MG15 with
the predicted backbone of the 120-kD glycoprotein shows that the
C-terminal domain is 70% identical. However, the identity between the
Pro-rich domains is much lower (39%). Like PELPIII, the carbohydrate
moiety of the 120-kD glycoprotein contains linkages characteristic for
both AGPs and extensins (Lind et al., 1994 ). However, the amount of 1,2-linked Ara (17 mol% and 36 mol% in PELPIII and the 120-kD glycoprotein, respectively) and of 1,3,6-linked Gal (16 mol% and 8.5 mol%, respectively) differs significantly between these two glycoproteins. Moreover, in contrast to PELPIII, the 120-kD
glycoprotein does not bind to -glucosyl Yariv reagent (Lind et al.,
1994 ). Like PELPIII, this glycoprotein is located in the IM of the
transmitting tract and after pollination can also be detected in the
pollen tube cell walls. However, unlike PELPIII, it is also found in the pollen tube cytoplasm (Lind et al., 1996 ). The function of this
glycoprotein is still unknown.
Another architecturally related protein characterized in tobacco,
called transmitting tissue-specific protein (TTS), contains a
C-terminal domain that shares 54% identity with that of PELPIII. TTS
is translocated into the pollen tube wall after pollination but not
into the pollen tube cytoplasm. This protein, as well as the N. alata counterpart N. alata TTS (NaTTS), has been
shown to promote pollen tube elongation and to attract pollen tubes grown in a semi-in vivo pollen tube culture system (Cheung et al.,
1995 ; Wu et al., 2000 ). Moreover, TTS is deglycosylated by pollen
tube-bound deglycosylating enzymes (Wu et al., 1995 ). A very similar
glycoprotein, galactose-rich style glycoprotein (GaRSGP), isolated from the styles of N. alata did not promote pollen
tube growth and attract pollen tubes in culture assays or get
deglycosylated by pollen tube enzymes in vivo (Sommer-Knudsen et al.,
1998b ). So far there is no indication that growing tobacco pollen tubes in vivo significantly modify PELPIII (de Graaf, 2000 ), which makes a
role in nutrition unlikely and suggests a more structural function of
these proteins. Although the structural similarities of several abundant P/HRGPs in the stylar transmitting tissue initially suggest functional redundancy to be present, biochemical characterization and
immunolocalization experiments have shown significant differences between these proteins, which necessitates their further functional analyses.
The differences between in vivo and in vitro pollen tube growth
indicate a major contribution of chemical and/or physical factors from
the female sporophytic tissue to pollen tube growth in vivo
(Heslop-Harrison et al., 1985 ; Lush et al., 1997 ; Cheung and Wu, 1999 ).
The accumulation of PELPIII in the transmitting tract and the
translocation of these proteins from the IM into the pollen tube walls
after pollination (de Graaf, 2000 ) suggest that this class of proteins
could directly or indirectly serve such a role. The availability of
purified PELPIII together with bioassays should enable a biochemical
approach toward studying their function. The availability of clones for
PELPIII alternatively allows a molecular approach to understanding
their function.
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MATERIALS AND METHODS |
Plant Material
Tobacco (Nicotiana tabacum cv Petit Havana SR1)
plants were grown under standard greenhouse conditions. Styles at stage
10 through 11 of flower development (Goldberg, 1988 ) were collected, immediately frozen in liquid nitrogen, and stored at 80°C.
Protein Purification
Protein Extraction
Stylar tissue was ground in liquid nitrogen to a fine powder
with a mortar and pestle. To obtain the optimal extraction buffer we
added to 0.15-g aliquots of stylar powder several buffers (1 mL, 4°C)
with various pH and salt concentrations. Results are shown for two
buffers: 84 mM citric acid and 2 mM
Na2S2O4 (pH 3; Cheung et al., 1995 )
and 50 mM sodium phosphate (pH 6). All buffers contained 15 mM -mercaptoethanol. Proteins were extracted by repeated
vortexing (30 s) and incubation on ice (15 min). The extract was
centrifuged (14,000g, 15 min, 4°C), and the
supernatant was collected. After estimation of the protein
concentration according to the method of Bradford (Bradford, 1976 ;
Bio-Rad, Hercules, CA), equal amounts of total protein extracts
were analyzed by SDS-PAGE and immunoblots. Densitometric analysis of
the polyacrylamide gels and immunoblots were performed with the GS-700
Imaging Densitometer (Bio-Rad) using the Molecular Analist 1.5 software
(Bio-Rad).
For the batch purification of PELPIII, the 84 mM citric
acid, 2 mM Na2S2O4 (pH
3) buffer was used as the extraction buffer. One thousand frozen styles
were ground to a fine powder, and 100 mL of extraction buffer was
added. Proteins were extracted as described above. After an initial
centrifugation (2,400 rpm, 10 min, 4°C) any particulate material was
removed from the soluble protein fraction by filtration through
Miracloth; this was followed by a second centrifugation step
(14,000g, 15 min, 4°C). The final supernatant was used
for further protein purification.
Chromatographic Separation/Purification
After buffer exchange into 50 mM sodium phosphate
(pH 6) using a Sephadex G-25 column (PD-10 column, Amersham Pharmacia
Biotech, Uppsala), the protein fraction was applied to a
sulfopropyl Sepharose cation exchange column (HiTrap SP, Amersham
Pharmacia Biotech). Proteins were eluted by a linear gradient of 0 to 1 M NaCl. Fractions containing PELPIII were pooled and
concentrated with a Centricon Concentrator
(Mr cut-off 30, Millipore-Amicon,
Bedford, MA) and separated on a Superose 12 gel filtration
column (Amersham Pharmacia Biotech) removing residual high- and
low-Mr proteins from the PELPIII-containing
fraction. Lingering impurities were removed by running the
PELPIII-containing fractions through a methyl-sulfonate cation exchange
column (Mono S, Amersham Pharmacia Biotech) using a linear gradient of
0 to 1 M NaCl. Purified PELPIII proteins were stored at
80°C.
Deglycosylation
Chemical Deglycosylation
The glycoprotein, either dried in a speedvac or lyophilized
(20-200 µg), was deglycosylated for 3 to 4 h on ice using TFMS as described by Edge et al. (1981) . The deglycosylated protein fraction
was precipitated by adding diethyl ether and n-hexane (9:1, v:v; Lind et al., 1994 ) and subsequently incubating the solution
for 1.5 h at 80°C. After centrifugation (15 min, 500g, 4°C),
the transparent pellet was washed with 95% (v/v) ethanol and
dried under vacuum before being solubilized in water. As an alternative
to the chemical deglycosylation by TFMS, anhydrous HF was used as
described by Du et al. (1994) , based on the method of Mort and Lamport
(1977) .
Enzymatic Deglycosylation
Cleavage of N-linked oligosaccharides from native
(10 µg) and TFMS-deglycosylated (5 µg) PELPIII was performed with
peptide-N-glycosidase F (recombinant
N-glycanase, Oxford Glycosciences, Abingdon Oxon, UK) according to the manufacturer's recommended procedure.
Amino Acid Analysis
Amino acid analysis was carried out by the amino acid analysis
laboratory (AAA Laboratory, Mercer Island, WA). A Beckman 7300 Amino Acid Analyzer coupled with System Gold software was used. Analysis after hydrolysis (20 h in 6 N HCl, 0.05% [v/v]
-mercaptoethanol, and 0.02% [w/v] phenol at 115°C) was
performed by post-column derivitization with ninhydrin using the
ion-exchange chromatographic methods developed by Stein and Moore
(1951) .
Electrophoretic Separation of Proteins
Protein samples were separated with SDS-PAGE according to the
discontinuous buffer system of Laemmli (1970) using 10% or 12% (w/v) SDS-polyacrylamide gels (Mini-Protean II apparatus,
Bio-Rad). Proteins were visualized by either Coomassie Brilliant Blue
R-250 or by silver staining.
Western-Blot Analysis
The proteins separated by SDS-PAGE were electroblotted onto
nitrocellulose in a buffer consisting of 39 mM Gly, 48 mM Tris base, 0.037% (w/v) SDS, and 20% (v/v)
methanol (pH 8.3; mini-gel transfer apparatus, Bio-Rad). The
nonspecific binding sites for immunoglobulins on the nitrocellulose
membrane were blocked overnight with 5% (w/v) nonfat dried milk in
phosphate-buffered saline. After blocking, the membrane was incubated
for 2 h with immune serum containing antibodies against PELPIII
(I-C3P), diluted 1:000 in blocking buffer. Bound antibody was detected
with alkaline phosphatase-conjugated goat anti-rabbit antibodies
(Pierce, Rockford, IL), diluted 1:5,000 to 1:10,000 in blocking
buffer. The membranes were developed with 0.33 mg mL 1
nitro blue tetrazolium and 0.165 mg mL 1
5-bromo-4-chloro-3-indolyl phosphate in alkaline phosphatase buffer
(100 mM Tris [pH 9.5], 100 mM NaCl, and 5 mM MgCl2).
AGP Detection on Western Blots
-Glucosyl Yariv reagent (Biosupplies, Melbourne,
Australia), a diagnostic reagent for AGPs, was used to test for the
presence of AGPs after electroblotting onto nitrocellulose as described by Baldwin et al. (1993) .
Monosaccharide Analysis
Monosaccharides were either analyzed as their alditol acetates
after trifluoroacetic acid hydrolysis (as described below after methylation) or as their trimethylsilylated methylglycosides following methanolysis. (Chaplin, 1982 ; Bacic et al., 1987 ), using 1 to 5 µg of
purified PELP III. The trimethylsilyl methylglycosides were analyzed by
gas-liquid chromatography-mass spectrometry as described by Bacic et
al. (1987) .
Carbohydrate Linkage Analysis
Purified PELPIII samples (5-20 µg) were methylated according
to a modified procedure of Ciucanu and Kerek (1984) as described by
Oxley and Bacic (1995) . The methylated samples were hydrolyzed with 2 M trifluoroacetic acid at 100°C for 2 h, reduced
with 1 M NaBD4 (sodium borodeuteride) in 2 M NH3 at room temperature for 2.5 h, and
acetylated with acetic anhydride at 100°C for 2.5 h. After
extracting the partially methylated alditol acetates with
dichloromethane, they were identified and quantified by gas-liquid chromatography-mass spectrometry essentially as described by Sims and
Bacic (1995) .
Determination of Total Carbohydrate
The phenol-sulfuric acid assay (Dubois et al., 1956 ) was used to
quantitatively determine the total amount of carbohydrates in a given
sample using D(+) Gal and L(+) Ara as internal standards.
Determination of Protein Concentration
Protein concentrations were either determined from the amino
acid analysis or with a protein assay (Bio-Rad) based on the Bradford
(1976) dye-binding procedure using bovine serum albumin as the
internal standard.
Amino Acid Sequencing
The two backbones obtained after chemical deglycosylation
of purified PELPIII with TFMS were electrophoretically separated and
electroblotted to polyvinylidene fluoride membrane using 10 mM 3-[cyclohexylamino]-1-propanesulfonic acid.
Automated Edman degradation was performed using a protein sequencer
(Perkin-Elmer Applied Biosystems, Foster City, CA) by the
Protein Analysis Laboratory of the University of Alabama (Birmingham)
and by Midwest Analytical, Inc. (St. Louis).
 |
ACKNOWLEDGMENTS |
We gratefully acknowledge Professor Bacic for critically
reviewing the manuscript. We thank Professor Bacic and colleagues (Plant Cell Biology Research Centre, School of Botany, University of
Melbourne) for providing facilities and hospitality for the carbohydrate analysis, and the Dutch Foundation Nederlandse Organisatie voor Wetenschappelijk Onderzoek (NWO) for a travel grant to
Maurice Bosch.
 |
FOOTNOTES |
Received September 22, 2000; returned for revision November 8, 2000; accepted December 15, 2000.
*
Corresponding author; e-mail mbosch{at}sci.kun.nl; fax
31-243652490.
 |
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