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Plant Physiol, December 2001, Vol. 127, pp. 1845-1853
Quantitative Analysis of Indole-3-Acetic Acid Metabolites in
Arabidopsis1
Mariusz
Kowalczyk and
Göran
Sandberg*
Umeå Plant Science Center, Department of Forest Genetics and Plant
Physiology, Swedish University of Agricultural Sciences, SE-901 83 Umeå, Sweden
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ABSTRACT |
A general gas chromatography/mass spectrometry (MS)-based screen
was performed to identify catabolites and conjugates of indole-3-acetic acid (IAA) during vegetative growth of Arabidopsis. This experiment revealed the existence of two new conjugates:
N-(indole-3-acetyl)-alfa-alanine (IA-Ala) and
N-(indole-3-acetyl)-alfa-leucine (IA-Leu). A method for
quantitative analysis of IAA metabolites in plant extracts by liquid
chromatography-electrospray tandem MS has been developed. The accuracy
and precision of the new method are better than 10% for standards
close to the detection limit, and are between 6% and 16% for the
entire protocol applied to plant extracts. The low detection limits,
0.02 to 0.1 pmol for the different metabolites, made it possible to use
as little as 50 to 100 mg of tissue for quantitative analysis. The
analysis was performed on different tissues of an Arabidopsis plant at
two stages of development, using heavy labeled internal standards of
the catabolite 2-oxoindole-3-acetic acid as well as IAA conjugated to
amino acids: aspartate, glutamate, Ala, and Leu. Expanding leaves and
roots that generally contain high amounts of the free hormone also
contained the highest levels of IA-aspartate, IA-glutamate, and
2-oxoindole-3-acetic acid, supporting their role as irreversible
catabolic products. The levels of IA-Leu and IA-Ala did not follow the
general distribution of IAA. Interestingly, the level of IA-Leu was
highest in roots and IA-Ala in the aerial tissues.
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INTRODUCTION |
Indole-3-acetic acid (IAA, auxin) is
an important plant hormone controlling a variety of developmental
processes. Reliable and sensitive quantification methods for IAA have
been developed over the last decade, and a significant amount of
information is available on the levels of free hormone in plants
(Edlund et al., 1995 ; Ribnicky et al., 1998 ; Prinsen et al., 2000 ).
Although the metabolism of IAA is relatively well investigated, the
information on the levels and relative importance of its major
metabolites is rare. IAA can be catabolized by several pathways
including conjugation to sugars and amino acids and non-decarboxylative or decarboxylative oxidation (for review, see Normanly, 1997 ). Until
recently, conjugated IAA species have been quantified indirectly, via
hydrolysis to free hormone (Baldi et al., 1989 ; Bialek and Cohen,
1989 ). Ester conjugates can be hydrolyzed using mild alkaline conditions at room temperature, and amide conjugates require strong alkaline conditions and at least 100°C for hydrolysis. The latter approach is often called the total IAA method because under such conditions, both types of conjugated IAA are hydrolyzed and are subsequently measured as a sum of free IAA present in the sample before
hydrolysis and IAA resulting from hydrolyzed conjugates. This
relatively simple method has been favored by many researchers; however,
for the biochemical studies on IAA metabolism, it is not specific or
selective enough. Furthermore, some IAA-related indolic compounds have
been reported to interfere with the assay. Indole-3-acetonitrile (IAN)
can be converted to IAA during the strong alkaline hydrolysis, thus an
appropriate correction involving measurement of IAN in the same samples
has to be applied (Ilic et al., 1996 ). Müller and Weiler (2000)
have recently published results where they suggested interference of
indole-3-glycerol phosphate (IGP) with the total IAA method. One way to
avoid such interference is to measure the individual conjugates
directly. Suitable internal standards are not available commercially,
however, the
[indole-13C6]-labeled
parent IAA molecule is, and a relatively easy protocol for synthesis of
labeled amide conjugates has been published (Ilic et al.,
1997 ).
Normanly and coworkers (Tam et al., 2000 ) have tested direct gas
chromatography (GC)-selected ion monitoring-mass spectrometry (MS)
measurement of one ester (IA-Glc) and two amide conjugates (IA-Asp and
IA-Glu). Relatively high amounts of plant tissue had to be used to
obtain measurable amounts of analytes, which required samples to be
cleaned up with a complex procedure involving several preparative HPLC
steps. The results have shown very low endogenous levels of all
measured conjugates compared with total IAA results.
In this work, we performed a total screen to identify the IAA
conjugates present in Arabidopsis tissues during vegetative growth.
Thereafter, we developed a method with a relatively simple purification
protocol for low amounts of plant tissues and a sensitive liquid
chromatography (LC)-electrospray ionization (ESI)-MS/MS method for
quantification of IAA metabolites. The developed method was used to
describe the distribution of these metabolites in vegetative tissues of Arabidopsis.
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RESULTS AND DISCUSSION |
Screen for Amide Conjugates
We have performed a total screen based on initial HPLC
fractionation and subsequent GC/MS analysis to identify the IAA
conjugates present in Arabidopsis tissues during vegetative growth.
Plant extract was first fractionated into 65 samples by HPLC, and each individual sample was subjected to a full scan analysis. The generated full scan data served as a database to screen ions characteristic for
indoles (Östin et al., 1998 ). Using this procedure, we confirmed the presence of endogenous metabolites previously identified in Arabidopsis (Östin et al., 1998 ; Barratt et al., 1999 ; Tam et al., 2000 ) such as IA-Asp, 2-oxoindole-3-acetic acid (OxIAA), and
IA-Glu (data not shown), as well as identified two additional conjugates, N-(indole-3-acetyl)- -Ala and
N-(indole-3-acetyl)-Leu (Fig.
1). The ability of Arabidopsis tissues to
synthesize IA-Leu was previously indicated using thin layer
chromatography analysis (Sztein et al., 1995 ), but the compound was not
conclusively identified as an endogenous IAA conjugate. Our
identification based on mass spectrum, GC, and LC retention time is
important because IA-Leu is proposed to be a key substrate for ILR1
hydrolase (Bartel and Fink, 1995 ). The evidence of IA-Leu being an
endogenous constituent is also strong support for the suggested
importance of this hydrolase in auxin homeostasis. The Ala conjugate of
IAA has been identified in spruce (Picea abies; Östin
et al., 1992 ) and tobacco (Nicotiana tabacum; M. Kowalczyk
and G. Sandberg, unpublished data), but it has not been detected as an
endogenous component of Arabidopsis. Interestingly, this compound is a
high-specificity substrate for recently cloned IAR3
hydrolase (Davies et al., 1999 ). Formation of IA-Leu and IA-Ala was not
observed in response to applied IAA (Östin et al., 1998 ; Barratt
et al., 1999 ), which may show that their role in the hormone metabolism
is different from the other conjugates. High concentrations of
exogenous IAA stimulated the production of IA-Asp and IA-Glu, neither
of which is a good substrate for ILR1/IAR3 proteins. This suggests that
IA-Leu and IA-Ala may be used for hormone homeostasis and storage,
whereas IAA conjugated to Asp (and possibly Glu) is a "sink"
catabolite and a substrate for a further oxidative metabolism (Tuominen
et al., 1994 ; Östin et al., 1998 ). This is also supported by the
observation that IA-Ala is a good slow-release auxin source in the
plant tissue cultures (Hangarter et al., 1980 ; Caruso, 1987 ; Magnus et
al., 1992 ), whereas IA-Asp is only a mediocre auxin source.

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Figure 1.
Ion chromatograms for m/z 202 (left)
and mass spectra (right) of the new endogenous amide conjugates from
Arabidopsis identified during a screen for indolic compounds in
vegetative tissues. A, N-(indole-3-acetyl)- -Ala from HPLC
fraction 44; B, N-(indole-3-acetyl)- -Leu from HPLC
fraction 56. The asterisk on ion chromatogram indicates the peak from
which spectrum was taken.
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During the development of the multiple reaction monitoring analysis
(MRM), we have obtained data indicating that IAA conjugated to -Ala
may be present in the samples from wild-type Arabidopsis plants,
however, the full identification of this compound remains to be performed.
Although several other indolic compounds were picked up during the
screen, we failed to find any other amide conjugates among them. Thus,
it can be concluded that if such amide conjugates are present in
vegetative tissues, their relative levels must be much lower than the
ones we found. Alternatively, their chemical properties could prevent
them from being analyzed by GC/MS, as for example,
N -(indole-3-acetyl)-Gln (Barratt et al.,
1999 ) or protein/peptide-linked IAA molecules (Bialek and Cohen,
1986 ).
Some authors have speculated that a large variety of amide conjugates
must exist because of the variety and wide specificity of the
conjugate-hydrolyzing enzymes (Tam et al., 2000 ). Based on data
obtained from our screen, this seems not to be the case during the
vegetative stage of growth. However, it may be completely different in other developmental stages, for example, during seed maturation and germination.
Method Optimizations and Choice of Diagnostic
Transitions
Amide conjugates of IAA can be analyzed without any prior
derivatization in positive or negative ESI modes. Our primary concerns were sensitivity and good chromatographic separation, and with such
constraints, methylation of the carboxyl group is clearly an advantage.
In LC-ESI-MS, sensitivity depends upon the mobile phase composition and
the nature of the analyte. It is generally accepted that mobile phase
with lower concentrations of the electrolyte and higher composition of
the organic solvent is more suitable to obtain good ionization
efficiency. Methylated molecules elute from the column at higher
concentrations of an organic phase, thus making the response higher
because of an easier ion desorption process or because of a
partitioning effect within ESI droplets (Cech et al., 2001 ). For a
sensitive MRM method, stability of precursor and daughter ions are very
important because the yield of a daughter ion determines total
intensity of the signal (Guan et al., 1999 ). The optimal conditions for
MRM are such that the precursor ion is stable enough to pass through
the first quadrupole, yet fragile enough to fragment completely in the
second quadrupole (collision-induced dissociation zone) and yield an
abundant daughter ion that is monitored in the third quadrupole. We
have investigated the fragmentation patterns for methyl esters and
underivatized amide conjugates of IAA with no collision gas and
collision energy set to 0 eV in ESI+ mode to
evaluate the stability of [M+H]+ parent ions.
The stability of parent ions for underivatized conjugates in
ESI mode was not tested, primarily because it
required changes in pH of the mobile phase that resulted in poor
chromatographic resolution. For methylated and underivatized compounds
in "no collision" conditions, [M+H]+ ions
were very intense, and practically no fragmentation was observed (data
not shown). Introduction of collision-induced dissociation gas and
setting collision energy to 18 eV usually caused (notably not for
underivatized IA-Glu) complete breakage of the parent ions.
Underivatized analytes yielded almost exclusively
quinolinium/quinolonium ions (m/z 130 and 146) and amino
acid side chain daughter ions, whereas methylated compounds produced
some additional low-intensity fragments from the breakage of ester
bonds. The signal strength was 50 to 100 times higher for methylated in
comparison with underivatized conjugates. Prinsen and coworkers
(Prinsen et al., 1997 ) also reported a similar increase in sensitivity
and improvement in chromatography after methylation of the IAA carboxyl group.
Mass spectra for methylated amide conjugates were, in general, similar
to these reported before using continuous flow fast-atom bombardment
(Tuominen et al., 1994 ). In both types of ionization, the major
fragment was a quinolinium ion at m/z 130 for amide conjugates and a quinolonium ion at m/z 146 for OxIAA.
Transitions from the parent [M+H]+ ions to
these most intense fragment ions were chosen for monitoring in MRM.
Details of the mass spectra and diagnostic transitions are shown in
Table I, and example standards and
samples chromatograms in are shown in
Figures 2 and 3, respectively.
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Table I.
Diagnostic reactions and detection limits at signal
to noise ratio (S/N) of three for the methyl esters of analyzed
compounds and corresponding internal standards
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Figure 2.
Separation of the conjugates/catabolites standard
mixture during LC-MRM-MS measurement. Each trace represents one
transition from the pseudo-molecular parent ion to the most intense
daughter ion (details shown in Table I). The mixture contained 50 pg of
each metabolite.
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Figure 3.
Linearity and dynamic range of the response during
LC-MRM-MS analysis of IAA conjugates/catabolites. Each data point on
the calibration curves represents the mean of five independent samples,
and the error bars represent the SD.
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To avoid interference from other plant metabolites and to reduce the
noise level, we decided to perform the analysis using groups (Fig. 2).
Within the retention frame, the mass spectrometer was set to detect
only two parent/daughter transitions: one for the endogenous compound
eluting at that time frame and one for the added internal standard of
the same or similar retention time. Although such an approach heavily
depends on the retention time reproducibility, it usually produces very
clean and interference-free results, making integration and
quantification easier. In addition, using groups for the measurement
allows increasing dwell time for each pair of ions, which may in turn
increase sensitivity and selectivity.
Linearity, Accuracy, Precision, and Limits of Detection and
Quantification
Linearity of the response was evaluated by analysis of several
native standards replicates with
[indole-13C6]-labeled
internal standards. Response curves were found to be linear up to a
ratio of 4 (linearity in the working range up to a ratio of 1.5 is
shown in Fig. 4). With ratios twice as
high, slight curvature was detected (data not shown). Because the
internal standards have six 13C atoms, this
curvature cannot be attributed to the effect of the natural isotope
abundance and is caused by a fixed, independent-of-sample-concentration ion signal at higher analyte concentrations. Nevertheless, coefficients of determination (the square root of correlation coefficient) were
between 0.998 and 0.999 for all calibration equations.

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Figure 4.
LC-MRM-MS measurements of OxIAA and the conjugates
in 100 mg of plant tissue. Endogenous metabolites of IAA in roots (A)
and 3rd and 4th leaves (B) 10 d after germination (DAG). Traces
for IA-Ala, IA-Asp, and IA-Glu are magnified to allow the same scaling
for all chromatograms.
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The reproducibility of the peak ratio response (Table
II) for five replicate analyses
corresponding to 5 and 200 pg were between 1.9% and 7.9%. Variation
was higher for the 5-pg range, possibly because the analyses were
performed very close to the detection limits. Due to the nature of the
peak detection and integration algorithms in the software we have used,
manual correction of the integration was usually required, probably
introducing some additional errors. However, we found reproducibility
of the peak ratio response to be in an acceptable range. The precision
and accuracy was also estimated using plant extracts. Three purified plant samples were pooled and analyzed three times by MRM. Results obtained from the repetitions were almost identical for all the conjugates analyzed, with RSD of approximately 1.5% (Table
III). The precision of purification was
estimated using the extract from 1 g (fresh weight) of plant
tissue subsequently divided into 10 samples purified and analyzed
independently (Table III). For all the analytes, precision of
purification was within the range of 15%. The least satisfactory
results, 16.2% and 14.5%, were obtained for OxIAA and IA-Ala,
possibly due to the difficulties in quantitative derivatization of
these very polar compounds in the plant samples with ethereal
diazomethane.
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Table II.
Precision of response determination
Analysis was performed by coinjection of 5 and 200 pg of OxIAA and
conjugates samples together with 50 pg of internal standards.
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Table III.
Accuracy and precision of analysis and
purification
Accuracy of the analysis was estimated by three measurements of three
Arabidopsis samples pulled together. Precision of
purification was estimated by extracting IAA metabolites from 1 g
of tissue. The extract was subsequently divided into 10 samples, which
were purified and analyzed independently.
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Detection limits at S/N = 3 were in range of 1 to 3 pg (Table I).
The reason for these relatively high figures is that the noise from
solvent in the mass region where parent ions are detected is rather
high. However, detection limits of such range are rather typical for
ESI+-based quantification methods. The method we
developed should provide reliable quantification at 3 to 15 pg
(S/N = 10) level, which is 2 to 10 times less than the expected
levels of any IAA metabolite in 100 mg of Arabidopsis tissue. Estimated
detection limits for underivatized analytes were around 10 to 20 times
higher than those of methylated compounds (not shown).
Quantification of IAA Metabolites in Plant Tissues
The method described in this paper was used to quantify IAA
metabolites in various parts of the Arabidopsis plant during vegetative growth (Fig. 5). These results confirmed
earlier findings from feeding experiments with low concentrations of
exogenous IAA where the major products were OxIAA and IA-Asp
(Östin et al., 1998 ). The most abundant metabolite in all
analyzed tissues was OxIAA, with levels from 74 pg
mg 1 of fresh weight in roots down to around 8 pg mg 1 of fresh weight in old leaves and
cotyledons. The distribution pattern of OxIAA as well as IA-Asp and
IA-Glu follows that of free IAA (Fig. 5), with high levels in leaves
possessing cell division and elongation growth (leaves 3-4, 10 DAG).
The IAA concentration drops when cell division ceases, as is shown by
leaves 1 and 2 (10 DAG), which still undergo substantial elongation
growth to reach relatively low IAA levels in leaves that have almost
reached their final size (leaves 1st to 2nd and 3rd to 4th, 17 DAG).
Interestingly, the close correlation between free IAA and its presumed
catabolites, OxIAA, IA-Asp, and IA-Glu, observed in leaves also holds
true for the root system. Our data showing high levels of free IAA in
roots matched by high levels of the catabolites indicate very rapid
turnover of the hormone in this tissue, which is in agreement with a
recent finding that the root system has strong capacity for de novo
synthesis of IAA (Ljung et al., 2001 ). The remaining two compounds
measured did not follow the same distribution pattern. IA-Ala was
distributed evenly at around 0.05 pg mg 1 fresh
weight levels, except for roots, where it existed in very minute
amounts close to the detection limit of the method. In contrast, IA-Leu
was present at much higher levels in roots (around 0.15 pg
mg 1 of fresh weight), and its levels in aerial
parts were 60% lower. The total amount of amide-conjugated IAA in the
tissues investigated 10 DAG was 26.1 pg mg 1 of
fresh weight, almost 20 times less than usually obtained from the total
IAA method (around 400 pg mg 1 of fresh weight
for 12 DAG seedlings [Tam et al., 2000 ]). The pool susceptible to
enzymatic hydrolysis (IA-Ala and IA-Leu) was never higher than of 0.1 pg mg 1 of fresh weight.

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Figure 5.
Quantification of IAA metabolites in Arabidopsis.
R-10, Roots 10 DAG; K-10, cotyledons 10 DAG; L1-10, 1st and 2nd
leaves 10 DAG; L3-10, 3rd and 4th leaves 10 DAG;
L1-17, 1st and 2nd leaves 17 DAG; L3-17, 3rd and 4th leaves 17 DAG.
Error bars represent SD from three independent
samples.
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It is generally accepted that different conjugates play different roles
in the IAA metabolism. Even within the chemically similar amide
conjugate family, differences in function are likely. It has been
postulated numerous times that IA-Asp could be an irreversible
catabolite rather than a reversible storage compound (Östin et
al., 1992 ; Riov and Bangerth, 1992 ; Sasaki et al., 1994 ; Tuominen et
al., 1994 ; Östin et al., 1998 ). If this is the case in
Arabidopsis, it would, from a physiological point of view, be
misleading to treat IA-Asp (and possibly IA-Glu) equally to IA-Leu or
IA-Ala because the latter conjugates most likely contribute back to the
free IAA pool. Therefore, results of "total IAA" measurements would
overestimate not only the levels of amide conjugates, but also
their relative importance for hormone homeostasis. On the other hand,
some evidence exists that IA-Asp may be hydrolyzed to the free hormone.
Ludwig-Muller and coworkers (Ludwig-Muller et al., 1996 ) described a
hydrolase from Chinese cabbage (Brassica campestris L. subsp. pekinensis) seedlings able to cleave IA-Asp. However,
it was not the best substrate for this enzyme, and furthermore, significant hydrolysis of IA-Asp was only detected after the
inoculation with Plasmodiophora brassicae. Unfortunately,
specificity and origin of this highly active isoform were not
established in the cited work. Another potential IA-Asp hydrolytic
system was proposed by Oetiker and Aeschbacher (1997) in henbane.
Although free hormone and IA-Asp could rescue the XIIB2 henbane mutant
cells, suggesting release of free IAA from IA-Asp, this was not
confirmed by a pulse-chase experiment. The authors also found that the
major route of IA-Asp was oxidation rather than the hydrolysis to IAA.
It clearly appears beneficial to use a direct approach, yet this study,
as well as the previous study by Tam and coworkers (Tam et al., 2000 ),
reports very low amounts of conjugates present in the Arabidopsis, in
contrast to the total IAA method. It is unlikely that the source of
such differences are ester conjugates of IAA because application of IAA
at low, close-to-physiological concentrations did not show any
production of the ester conjugated hormone (Östin et al., 1998 ).
This was also verified by Tam and coworkers (Tam et al., 2000 ), who
confirmed that IA-Glc is not abundant during the vegetative stage.
Therefore, it can be concluded that this discrepancy is caused by
unknown amide conjugates or by interfering compounds.
The screen for amide-conjugated IAA performed by us revealed the
existence of two new conjugates, IA-Ala and IA-Leu. Neither of the
newly found compounds contributed significantly to the total IAA pool;
in fact, their levels are much lower than that of IA-Asp and IA-Glu.
Based on our screen for indolic compounds, we assume that other amide
conjugates, if present in plants, would have even lower concentrations.
If that is the case, they would not contribute more then 1 pg
mg 1 of fresh weight to the total IAA pool.
Alternatively, they may be not amenable to GC/MS analysis used for
screening, like small peptides and IA-Gln, and should be screened using
other techniques. The possibility that N-glycoside-linked
IAA amide conjugates (Ljung et al., 2001 ) are present in the
Arabidopsis should also not be excluded.
So far, two compounds that could potentially yield IAA in alkaline
conditions and thus interfere with the total IAA method have been
proposed. Correction for IAN interference, required for total IAA
measurements in Arabidopsis (Ilic et al., 1996 ), is relatively easy to
perform, but careful calibration is needed due to the fact that the
available internal standard of IAN has only one
13C atom and the effect of natural
13C abundance is considerable. Ilic and coworkers
(Ilic et al., 1996 ) have also observed that glucobrassicin, the parent
indolic glucosinolate, is stable during high pH hydrolysis and does not yield IAN. This was further confirmed by experiments with synthetic glucobrassicin (Chevolleau et al., 1997 ). Although enzymatic breakdown of glucobrassicin at low pH produces IAN, it can be ignored if an IAN
correction measurement is performed on the same sample prior to total
IAA measurement or if conjugate extraction from the plant tissue
involves organic solvent at the concentrations preventing enzymatic activities.
Müller and Weiler (2000) recently presented interesting
results on interference of IGP with the total IAA method. The authors suggested that phosphatase- or plant protein extract-treated IGP broke
down to indole-3-acetaldehyde and IAA at high pH. Conversion of IGP to
IAA in alkaline conditions would obviously explain the difference
between direct measurement and total IAA method, however, it seems
impossible for such a reaction to occur only by thermal/pH catalysis.
In conclusion, we have developed a simple and sensitive method for
direct quantification of selected IAA catabolites and conjugates in
plant tissue. The method allowed us to analyze levels of four conjugates and one oxidative catabolite in Arabidopsis. The results obtained demonstrated that the distribution of OxIAA, IA-Asp, and
IA-Glu follows the distribution of the free hormone in the plant,
thereby showing that the tissues with high auxin levels also have rapid
turnover of the hormone. We also confirmed the existence of two
additional conjugates, IA-Ala and IA-Leu, in Arabidopsis. These two
conjugates were not linked to the catabolism, and they showed
tissue-specific distribution. It remains to be investigated whether
they have a role in maintaining the auxin homeostasis in plant cells.
Our data also positively verified the findings of Tam and coworkers
(Tam et al., 2000 ) that major IAA conjugates found in feeding
experiments exist naturally at very low levels. This raises a question
about the source of large amounts of IAA detected with the total IAA
measurements and, because this indirect method is commonly used and
recommended (Prinsen et al., 2000 ), its further evaluation is necessary.
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MATERIALS AND METHODS |
Internal Standards and Reagents
[indole-13C6]-IAA was obtained from
Cambridge Isotope Laboratories (Andover, MA).
[indole-13C6] standards and unlabeled amide
conjugates were synthesized according to Ilic et al. (1997) , except
that [indole-13C6]-labeled and "cold" IAA
was used as a starting substrate, respectively. OxIAA and
2-oxo-[indole-13C6]-IAA were synthesized
using a method modified from the protocol of van der Weet and coworkers
(van de Weert et al., 1998 ). Approximately 200 µg of
[indole-13C6]-IAA (or IAA for synthesis of
unlabeled compound) was dissolved in 250 µL of a dimethyl
sulfoxide:HCl:acetic acid (1:5:10, v/v) mixture and left in the open
tube for 6 h at room temperature. The reaction mixture was then
diluted with distilled, deionized water and applied to a SepPak
C18 SPE column (Varian, Palo Alto, CA). After washing with
two column volumes of 1% (v/v) acetic acid, the compound of interest
was eluted with 60% (v/v) methanol/1% (v/v) acetic acid, concentrated
in vacuum, and subsequently purified using the preparative HPLC system
described below. The identity and purity of the compound was confirmed
by GC/MS analysis. HPLC-grade solvents were from J.T. Baker
(Phillipsburg, NJ), all other chemicals were from Sigma-Aldrich (St.
Louis; unless stated otherwise).
Plant Material and Growth Conditions
Seeds of Arabidopsis ecotype Columbia were sterilized with 90%
(v/v) ethanol for 2 min and dried on the sterile filter paper. Seeds
were then germinated in petri dishes containing agar-solidified Murashige and Skoog medium and were grown for 14 d at 21°C in 16-h photoperiods. For indolic compounds screens, nonsterile
greenhouse-grown plants were used.
Screen for the Amide Conjugates of IAA
Approximately 75 g of the entire 3-week-old Arabidopsis
plants were frozen with liquid nitrogen, homogenized, and extracted with 80% (v/v) methanol containing 2.5 mM
diethyl,dithio-carbamic acid. The extract was centrifuged (30 min,
18,500 rpm, 4°C), brought to a water phase in a rotary evaporator,
and after the pH adjustment to 3.0, it was passed through an
Env+ SPE column (Isolute Env+; International
Sorbent Technology Ltd., Hengoed, Mid Glamorgan, UK). Absorbed material
was subsequently eluted with 80% (v/v) methanol/1% (v/v) acetic acid,
and eluate was concentrated under vacuum and dissolved in 1 mL of 5%
(v/v) methanol/1% (v/v) acetic acid. The sample was next separated on
a preparative HPLC system composed of a 600E controller and pump module
(Waters, Milford, MA), a 996 diode-array detector (Waters), and a
RediFrac100 fraction collector (Pharmacia, Piscataway, NJ). Linear
gradient elution was used from 5% (v/v) methanol/1% (v/v) acetic acid
to 90% (v/v) methanol/1% (v/v) acetic acid over 45 min, with a flow
of 2.5 mL min 1. A regular preparative C18
column (ODS-2, 250 mm × 12 mm i.d.; Jones Chromatography
Ltd., Hengoed, Mid Glamorgan, UK) was used. Sixty-five fractions of 2.5 mL each were collected and dried down. Samples were methylated with
diazomethane, silylated with
N,O-bis(trimethylsilyl)trifluoroacetamide/1% (v/v) trimethyl chlorosilane (Pierce, Rockford, IL) and then full scan
GC/MS analysis in m/z range of 40 to 800 was performed
in the standard conditions described before (Edlund et al., 1995 ). The
search for typical fragments from indolic compounds was then performed
on the obtained data using Xmass software from JEOL (Tokyo) and the
custom spectra library.
LC-MRM-MS-Based Quantification
For LC-MS quantification, approximately 20 to 100 mg of the
plant tissue was used. Internal standards concentrations used are
summarized in Table I. After the extraction with 1 mL of 60% (v/v)
2-propanol and 2.5 mM diethyl,dithio-carbamic acid for 6 h at 4°C, samples were centrifuged, the organic solvent from supernatants was removed in vacuum, and pH was adjusted to 7.0. Next,
samples were partitioned three times with 500 µL of diethyl ether.
The water phase was acidified to pH 2.7 and was purified on the 50-mg
Env+ SPE column (Isolute), dried, and methylated with
diazomethane. The entire sample (35 µL in 5% [v/v] methanol/1%
[v/v] acetic acid) was injected into a LC/MS system consisting of an
Alliance HT module (Waters) and a Quatro Ultima mass spectrometer
(Micromass International, Manchester, UK) operating in positive
ESI mode. Compounds of interest were first absorbed on the
SymetryShield C18 precolumn (10 × 2.1 mm i.d.;
Waters) and washed with 10% (v/v) acetonitrile/1% (v/v) formic acid
for 2 min at flow of 200 µL min 1. After that, the
SymetryShield analytical column (150 × 2.1 mm i.d.; Waters) was
connected via an automatic valve and exponential gradient elution from
10% to 80% (v/v) acetonitrile/1% (v/v) formic acid in 30 min at the
same flow rate was started. Column effluent was introduced into the ESI
ion source held at 100°C, and the capillary voltage was 3.22 kV, cone
voltage was 48 V, and dissolvation gas temperature was 320°C. The
mass spectrometer was operated in MRM mode with the collision energy
set to 18eV. Table I summarizes monitored ions. Obtained data were
processed with MassLynx 3.5 software (Micromass).
 |
ACKNOWLEDGMENTS |
The authors wish to thank Roger Granbom for technical
assistance, as well as Anders Östin, Jan Eklöf, and Volker
Magnus for discussions and critical reading of the manuscript.
 |
FOOTNOTES |
Received June 15, 2001; returned for revision July 13, 2001; accepted September 15, 2001.
1
This work was supported by the Swedish Research Council.
*
Corresponding author; e-mail Goran.Sandberg{at}genfys.slu.se; fax
46-90-786-5901.
Article, publication date, and citation information can be found at
www.plantphysiol.org/cgi/doi/10.1104/pp.010525.
 |
LITERATURE CITED |
-
Baldi BG, Maher BR, Cohen JD
(1989)
Hydrolysis of indole-3-acetic-acid esters exposed to mild alkaline conditions.
Plant Physiol
91: 9-12[Abstract/Free Full Text]
-
Barratt NM, Dong WQ, Gage DA, Magnus V, Town CD
(1999)
Metabolism of exogenous auxin by Arabidopsis thaliana: identification of the conjugate N-
-(indol-3-ylacetyl)-glutamine and initiation of a mutant screen.
Physiol Plant
105: 207-217[CrossRef] -
Bartel B, Fink GR
(1995)
ILR1, an amidohydrolase that releases active indole-3-acetic acid from conjugates.
Science
268: 1745-1748[Abstract/Free Full Text]
-
Bialek K, Cohen DJ
(1986)
Isolation and partial characterization of the major amide-linked conjugate of indole-3-acetic acid from Phaseolus vulgaris L.
Plant Physiol
80: 99-104[Abstract/Free Full Text]
-
Bialek K, Cohen JD
(1989)
Quantitation of indoleacetic-acid conjugates in bean seeds by direct tissue hydrolysis.
Plant Physiol
90: 398-400[Abstract/Free Full Text]
-
Caruso JL
(1987)
The auxin conjugates.
Hort Sci
22: 1201-1204
-
Cech NB, Krone JR, Enke CG
(2001)
Predicting electrospray response from chromatographic retention time.
Anal Chem
73: 208-213[Medline]
-
Chevolleau S, Gasc N, Rollin P, Tulliez J
(1997)
Enzymatic, chemical, and thermal breakdown of H-3-labeled glucobrassicin, the parent indole glucosinolate.
J Agric Food Chem
45: 4290-4296[CrossRef]
-
Davies RT, Goetz DH, Lasswell J, Anderson MN, Bartel B
(1999)
IAR3 encodes an auxin conjugate hydrolase from Arabidopsis.
Plant Cell
11: 365-376[Abstract/Free Full Text]
-
Edlund A, Eklöf S, Sundberg B, Moritz T, Sandberg G
(1995)
A microscale technique for gas-chromatography mass-spectrometry measurements of picogram amounts of indole-3-acetic-acid in plant tissues.
Plant Physiol
108: 1043-1047[Abstract]
-
Guan FY, Ishii A, Seno H, Watanabe-Suzuki K, Kumazawa T, Suzuki O
(1999)
Identification and quantification of cardiac glycosides in blood and urine samples by HPLC/MS/MS.
Anal Chem
71: 4034-4043[Medline]
-
Hangarter RP, Peterson MD, Good NE
(1980)
Biological activities of the indoleacetylamino acids and their use as auxins in tissue culture.
Plant Physiol
68: 761-767
-
Ilic N, Magnus V, Östin A, Sandberg G
(1997)
Stable-isotope labeled metabolites of the phytohormone, indole-3-acetic acid.
J Label Compd Radiopharm
39: 433-440[CrossRef]
-
Ilic N, Normanly J, Cohen JD
(1996)
Quantification of free plus conjugated indoleacetic acid in Arabidopsis requires correction for the nonenzymatic conversion of indolic nitriles.
Plant Physiol
111: 781-788[Abstract]
-
Ljung K, Bhalerao RP, Sandberg G
(2001a)
Sites and homeostatic control of auxin biosynthesis in Arabidopsis during vegetative growth.
Plant J
28: 1-11[CrossRef][ISI][Medline]
-
Ljung K, Östin A, Lioussanne L, Sandberg G
(2001b)
Developmental regulation of indole-3-acetic acid turnover in Scots pine seedlings.
Plant Physiol
125: 464-475[Abstract/Free Full Text]
-
Ludwig-Muller J, Epstein E, Hilgenberg W
(1996)
Auxin-conjugate hydrolysis in Chinese cabbage: characterization of an amidohydrolase and its role during infection with clubroot disease.
Physiol Plant
97: 627-637[CrossRef]
-
Magnus V, Nigovic B, Hangarter RP, Good NE
(1992)
N-(indol-3-ylacetyl)-amino acids as sources of auxin in plant tissue culture.
J Plant Growth Regul
11: 19-28
-
Müller A, Weiler EW
(2000)
Indolic constituents and indole-3-acetic acid biosynthesis in the wild-type and a tryptophan auxotroph mutant of Arabidopsis thaliana.
Planta
211: 855-863[CrossRef][ISI][Medline]
-
Normanly J
(1997)
Auxin metabolism.
Physiol Plant
100: 431-442[CrossRef]
-
Oetiker JH, Aeschbacher G
(1997)
Temperature-sensitive plant cells with shunted indole-3-acetic acid conjugation.
Plant Physiol
114: 1385-1395[Abstract]
-
Östin A, Kowalczyk M, Bhalerao RP, Sandberg G
(1998)
Metabolism of indole-3-acetic acid in Arabidopsis.
Plant Physiol
118: 285-296[Abstract/Free Full Text]
-
Östin A, Monteiro AM, Crozier A, Jensen E, Sandberg G
(1992)
Analysis of indole-3-acetic acid metabolites from Dalbergia dolichopetala by high-performance liquid-chromatography mass-spectrometry.
Plant Physiol
100: 63-68[Abstract/Free Full Text]
-
Östin A, Moritz T, Sandberg G
(1992)
Liquid-chromatography mass-spectrometry of conjugates and oxidative metabolites of indole-3-acetic acid.
Biol Mass Spectrom
21: 292-298[CrossRef]
-
Prinsen E, Van Dongen W, Esmans EL, Van Onckelen H
(1997)
HPLC linked electrospray tandem mass spectrometry: a rapid and reliable method to analyze indole-3-acetic acid metabolism in bacteria.
J Mass Spectrom
32: 12-22[CrossRef]
-
Prinsen E, Van Laer S, Oden S, Van Onckelen H
(2000)
Auxin analysis.
Methods Mol Biol
141: 49-65[Medline]
-
Ribnicky DM, Cooke TJ, Cohen JD
(1998)
A microtechnique for the analysis of free and conjugated indole-3-acetic acid in milligram amounts of plant tissue using a benchtop gas chromatograph-mass spectrometer.
Planta
204: 1-7[CrossRef][ISI][Medline]
-
Riov J, Bangerth F
(1992)
Metabolism of auxin in tomato fruit tissue: formation of high-molecular weight conjugates of oxindole-3-acetic acid via the oxidation of indole-3-acetylaspartic acid.
Plant Physiol
100: 1396-1402[Abstract/Free Full Text]
-
Sasaki K, Shimomura K, Kamada H, Harada H
(1994)
IAA metabolism in embryogenic and nonembryogenic carrot cells.
Plant Cell Physiol
35: 1159-1164[Abstract/Free Full Text]
-
Sztein AE, Cohen JD, Slovin JP, Cooke TJ
(1995)
Auxin metabolism in representative land plants.
Am J Bot
82: 1514-1521[CrossRef][ISI]
-
Tam YY, Epstein E, Normanly J
(2000)
Characterization of auxin conjugates in Arabidopsis: low steady-state levels of indole-9-acetyl-aspartate, indole-3-acetyl-glutamate, and indole-3-acetyl-glucose.
Plant Physiol
123: 589-595[Abstract/Free Full Text]
-
Tuominen H, Östin A, Sandberg G, Sundberg B
(1994)
A novel metabolic pathway for indole-3-acetic-acid in apical shoots of Populus tremula (L.) × Populus tremuloides (Michx.).
Plant Physiol
106: 1511-1520[Abstract]
-
van de Weert M, Lagerwerf FM, Haverkamp J, Heerma W
(1998)
Mass spectrometric analysis of oxidized tryptophan.
J Mass Spectrom
33: 884-891[CrossRef]
© 2001 American Society of Plant Physiologists
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