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Plant Physiol, January 2002, Vol. 128, pp. 21-29
An Oligopeptide Transporter Gene Family in
Arabidopsis1
Serry
Koh,2
Amy M.
Wiles,
Joshua S.
Sharp,
Fred R.
Naider,
Jeffrey M.
Becker, and
Gary
Stacey*
Center for Legume Research (S.K., G.S.), Department of Microbiology
(S.K., J.M.B., G.S.), Department of Biochemistry, Cellular, and
Molecular Biology (A.M.W., J.M.B.), and Graduate School of Genome
Science and Technology (J.S.S., J.M.B., G.S.), University of Tennessee,
Knoxville, Tennessee 37996-0845; and Department of Chemistry, College
of Staten Island, City University of New York, Staten Island, New York
10314 (F.R.N.)
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ABSTRACT |
We have identified nine oligopeptide transporter (OPT)
orthologs (AtOPT1 to AtOPT9) in
Arabidopsis. These proteins show significant sequence similarity to
OPTs of Candida albicans (CaOpt1p),
Schizosaccharomyces pombe (Isp4p), and
Saccharomyces cerevisiae (Opt1p and Opt2p). Hydrophilicity plots of the OPTs suggest that they are integral membrane proteins with 12 to 14 transmembrane domains. Sequence comparisons showed that the AtOPTs form a distinct subfamily when compared with the fungal OPTs. Two highly conserved motifs (NPG and
KIPPR) were found among all OPT members. The identification of multiple
OPTs in Arabidopsis suggests that they may play different functional
roles. This idea is supported by the fact that AtOPTs have a distinct, tissue-specific expression pattern. The cDNAs encoding
seven of the AtOPTs were cloned into a yeast vector under the control
of a constitutive promoter. AtOPT4 expressed in S. cerevisiae mediated the uptake of KLG-[3H]L.
Similarly, expression of five of the seven AtOPT proteins expressed in
yeast conferred the ability to uptake tetra- and pentapeptides as
measured by growth. This study provides new evidence for multiple
peptide transporter systems in Arabidopsis, suggesting an important
physiological role for small peptides in plants.
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INTRODUCTION |
Peptide transport involves the
translocation of peptides (2-6 residues in length) across the cellular
membrane in an energy-dependent manner and has been well documented in
bacteria, fungi, and mammals (Payne and Smith, 1994 ; Becker and Naider,
1995 ; Meredith and Boyd, 2000 ). After uptake, the internalized peptides
are rapidly hydrolyzed by peptidases and used as a source of amino
acids, nitrogen, or carbon. Compared with prokaryotes and animals,
peptide transport in higher plants has received little attention.
There are few published reports dealing with small peptides in plants.
Higgins and Payne (1982) reported that significant levels of peptides
were found in phloem and xylem exudates. These included the
non-protein-derived peptides (e.g. alanylaminobutyric acid and
glycylketoglutaric acid). The xylem contains lower levels of nitrogen
than the phloem, yet peptides were reported in the xylem exudates of
several species, such as the vegetative organs and berries of grape
(Khachidze, 1975 ) and the sap of corn (Fejer and Konay, 1958 ). Higgins
and Payne (1982) suggested that the transport of peptides is a more
efficient means of nitrogen distribution than the transport of
individual amino acids. This would be especially true for long-distance
transport during the bulk movement of protein-degradation products
(e.g. leaf senescence, seed germination). As nitrogen carriers,
peptides may also protect amino acids from catabolism by enzymes known
to be present in the phloem during transport within the plant (Higgins
and Payne, 1980 ). Glutathione (GSH), a modified tripeptide
( -Glu-Cys-Gly), has also been suggested as a carrier of reduced
sulfur in the phloem and xylem (Higgins and Payne, 1982 ).
-Glutamyl peptides frequently occur in considerable quantities,
especially in seeds and storage organs (Higgins and Payne, 1982 ). For
example, 34% of the non-protein amino nitrogen of a kidney bean seed
is present as
-glutamyl-S-methyl-L-Cys (Goore and
Thompson, 1967 ). Upon seed germination, this peptide is degraded, suggesting that it plays an important role in the storage of nitrogen and/or sulfur. Plant growth factors, such as auxin and gibberellin, are
frequently bound to small peptides and the peptide-hormone conjugates
are present in many tissues, such as the vascular system and the
endosperm of plant seeds (Salisbury and Ross, 1991 ). These conjugates
may be involved in regulating hormone activity in response to plant
growth and development, as well as facilitating hormone transport
(Salisbury et al., 1991 ). In addition to endogenous plant peptides,
several phytotoxins produced by plant pathogens are modified peptides
(Walton, 1990 ). Gross (1991) suggested that plant peptide transport
systems could be responsible for the recognition and transport of
peptide phytotoxins into plant cells.
Peptide transporters can be grouped into three distinct families based
on sequence similarity and mechanism: 1) the ATP-binding cassette (ABC)
superfamily (Higgins, 1992 ); 2) the peptide transporter (PTR) or
the proton-dependent oligopeptide transporter (POT) family (Paulsen and
Skurray, 1994 ; Steiner et al., 1995 ); and 3) the recently identified
oligopeptide transporter (OPT) family (Lubkowitz et al., 1997 ; Hauser
et al., 2001 ).
Plant members of the ABC family of peptide transporters include the
recently identified Arabidopsis GSH S-conjugate
transporters, AtMRP1 to AtMRP4 (Lu et al., 1997 ,
1998 ; Sánchez-Fernández et al., 1998 ).
The first plant PTR-like peptide transporter, Arabidopsis AtPTR2, was
identified by complementation of a yeast mutant defective in
di/tripeptide transport (Steiner et al., 1994 ). Transgenic plants
expressing antisense AtPTR2 exhibited a delayed flowering phenotype and an arrest in seed development, especially seed maturation (Song et al., 1997 ). In barley (Hordeumvulgare), peptide
transfer occurs across the scutellum layer, a specialized absorptive
tissue abutting the endosperm. The peptide transporter in barley seeds shares a number of similarities to members of the PTR family, including
transport of di- and tripeptides (Sopanen et al., 1977 ; Higgins and
Payne, 1978 ). A cDNA clone encoding a barley peptide transporter
(HvPTR1) was recently isolated (West et al., 1998 ) and this
protein was localized on the plasma membrane of the scutellar epithelium (Waterworth et al., 2000 ). Recent database comparisons revealed eight additional PTR orthologs in Arabidopsis, suggesting an
important role for this family in plant growth and development (data
not shown).
Members of the OPT family of peptide transporters have 12 to 14 predicted transmembrane domains and show no sequence similarity to ABC
or PTR transporters. Until now, members of the OPT family were only
characterized from yeast (i.e. Candida albicans, CaOpt1p [Lubkowitz et al., 1997 ]; Schizosaccharomyces pombe, Isp4p
[Lubkowitz et al., 1998 ]; Saccharomyces cerevisiae, Opt1p
and Opt2p; [Hauser et al., 2000 ]). These proteins were shown to
mediate the uptake of tetra- and pentapeptides (e.g. KLGL, KLLG,
or KLLLG). S. cerevisiae Opt1p was shown to transport
Met-enkephalin (YGGFM) and Leu-enkephalin (YGGFL) with a
Km of 310 µM for
YGGFL (Hauser et al., 2000 ). In contrast, Opt1p did not transport
various amino acids or di-/tripeptides tested (e.g. Tyr, L-L, and
G-G-F; Hauser et al., 2000 ). Interestingly, Bourbouloux et al. (2000)
reported that Opt1p was a high affinity GSH transporter, whereas Opt2p
was not.
The discovery of the OPT family of transporters in yeast (Lubkowitz et
al., 1997 ) led to a search of the sequence database for possible
orthologs in Arabidopsis. We report here the identification of nine
putative OPT family members that exhibit 49% to 53% sequence similarity to the yeast OPTs. Expression of seven of these proteins in
yeast confirmed the ability of some to mediate the uptake of tetra- and pentapeptides.
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RESULTS |
Arabidopsis OPT Orthologs Can Be Identified by Sequence
The GenBank database was searched using the TBLASTN 2.1.1 algorithm (Altschul et al., 1990 , 1997 ) with the complete sequence of
the C. albicans OPT, CaOpt1p (Lubkowitz et al., 1997 ). This analysis led to the identification of nine possible Arabidopsis OPT
orthologs (Fig. 1) that exhibited 49% to
53% sequence similarity to CaOpt1p. The Arabidopsis OPTs formed a
distinct subgroup when compared with the yeast OPT members and showed
61% to 85% sequence similarity when compared with each other (Fig.
1A). AtOPTs were positioned on the Arabidopsis genetic map
based on the position of their corresponding BAC or P1 clones used for
genome sequencing. AtOPT2 is located on chromosome 1, AtOPT3, 5, 6, and 7 are located on chromosome 4, whereas AtOPT1, 4, 8, and 9 are located on chromosome 5 (Fig. 1A).

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Figure 1.
Comparison of OPTs. A, Dendogram
showing a sequence comparison of the known members of the OPT family.
Analysis was performed using the CLUSTAL method in MegAlign (DNASTAR,
Madison, WI) using default parameters. Accession numbers are as
follows: AtOPT1, AB026659 GI:9758213; AtOPT2, AAB60748 GI:2160185;
AtOPT3, Z97341 GI:2244994; AtOPT4, AB008268 GI:9759417; AtOPT5,
AL078465 GI:4938497; AtOPT6, AL035602.1 GI:4469024; AtOPT7, AF080119
GI:3600039; AtOPT8, BAB09728.1 GI:9759191; AtOPT9, AB015476 GI:9759190;
Opt1p, Z49487; CaOpt1p, U60973; Isp4p, P40900; Opt2p, U25841. The
mapped positions of each AtOPT are indicated. B,
Hydrophilicity plots of AtOPT1-9 and CaOpt1p as predicted by Kyte and
Doolittle (1982) . The size (amino acids) of the each protein is shown
below the name of the gene. Analysis was performed using
Protean (DNASTAR) under default parameters. The bars over
each sequence show the location of the two conserved motifs (NPG and
KIPPR motifs) (i.e.
NPG[P/A]F[N/T/S]XKEH[V/T/A][L/I/V][I/V]I[T/S/V][I/V/M]
[F/M][A/S][N/S/A] and
K[L/F][G/A][H/M/T]YMK[I/V/L][P/D/S]PR).
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The hydrophilicity plots of the various AtOPTs were quite
similar to that of CaOpt1p (Fig. 1B). The size of proteins
predicted for each of the AtOPT varied from 696 amino acids (i.e.
AtOPT3) to 766 amino acids (i.e. AtOPT7; Fig. 1B). With the exception of AtOPT3, which has shorter N and C terminus regions, all AtOPTs were
similar in size to CaOpt1p (783 amino acids) and Opt1p (799 amino
acids). Interestingly, sequence comparisons revealed two domains that
were strongly conserved among all of the nine OPT family members. Both
of these motifs (i.e. NPG motif,
NPG[P/A]F[N/T/S]XKEH[V/T/A][L/I/V][I/V]I[T/S/V] [I/V/M][F/M][A/S][N/S/A] and KIPPR motif,
K[L/F][G/A][H/M/T]YMK[I/V/L][P/D/S] PR; Fig.
2A) were found in regions of the protein
predicted to be hydrophilic (Fig. 1B). As reported previously by
Lubkowitz et al. (1998) , none of the OPT family members
showed any significant sequence similarity to the known ABC or PTR
peptide transporters (data not shown). The putative transmembrane
regions of the various AtOPTs were predicted either by hydrophilicity
plots or the PRED-TMR algorithm (version 1.0, http://o2.db.uoa.gr/PRED-TMR), and the predicted transmembrane
domains of AtOPT1 (as example) are shown in Figure 2B.

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Figure 2.
Analysis of the OPT sequences. A, Two conserved
motifs (NPG and KIPPR motifs) among the OPT members, including fungal
OPTs, were determined based on the consensus of their sequences after
analysis using the CLUSTAL method in the MegAlign (DNASTAR). Shaded
area represents the consensus. B, The putative transmembrane domains of
the AtOPTs were determined by the PRED-TMR algorithm. Predicted
transmembrane regions of AtOPT1 are shown in bold and the underlined
sequences represents the two conserved motifs found in all OPTs.
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Tissue-Specific Expression of AtOPTs
Full-length cDNAs for the Arabidopsis OPT genes AtOPT1
to AtOPT7 were amplified by reverse transcriptase (RT)-PCR
using gene-specific primers deduced from the DNA sequence in the
database (see "Materials and Methods"). These cDNAs were completely
sequenced to confirm that full-length cDNAs were obtained. The
sequences of AtOPT8 and ATOPT9 only recently
appeared in the database and, therefore, were not included in this study.
The tissue-specific expression pattern of each of the
AtOPTs was determined by quantitative RT-PCR using
gene-specific primers. This was deemed necessary because of the
likelihood of cross-hybridization among the different family members.
As an internal control, Actin2 mRNA was also amplified. The
data shown in Figure 3 indicate that those OPTs that showed the greatest sequence similarity (Fig. 1A) also
exhibited similar patterns of expression. For example, the levels of
AtOPT2 and AtOPT4 mRNA were evenly expressed in all tissues. In contrast, the levels of AtOPT6 and
AtOPT7 mRNA were highest in flower and root tissues but
showed relatively low expression in leaf and stem. AtOPT1
was highly expressed in flower, and moderately expressed in leaf
and stem. AtOPT5 showed the highest sequence
similarity to AtOPT1 but its expression pattern was much
more specific, being expressed predominantly in flowers. However,
counts of 32P activity of AtOPT5
in the blot shown in Figure 3 confirmed very low expression of
AtOPT5 in leaf and root (data not shown). AtOPT3 showed a unique pattern of expression being strongest in flower, leaf,
and root. These data suggest that proteins with similar sequence, as
indicated in the CLUSTAL analysis (Fig. 1A), may have similar
physiological function, at least with regard to tissue specificity.
The various expression patterns clearly suggest that the
AtOPTs are likely playing a variety of physiological
roles.

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Figure 3.
Tissue-specific mRNA expression of
AtOPT1-7. RT-PCR analysis was performed as described in
"Materials and Methods" using gene-specific primers. The level of
Actin2 mRNA (right panel) was measured as an internal
control. F, Flower; L, leaf; S, stem; and R, root.
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The AtOPTs Are Functional Peptide Transporters
To test the biochemical function of the various AtOPT
proteins, their cDNAs were cloned behind the constitutive ADH (alcohol dehydrogenase) promoter in the pDB20 vector (Becker et al., 1991 ) and
transformed into S. cerevisiae strain BY4730. Transport
activity was measured by the ability of various Leu-containing peptides to support prototrophic growth of this strain, which is a Leu auxotroph. In this assay system, S. cerevisiae strain BY4730
will only grow if the cells can transport and utilize the peptides provided as the sole source of Leu. Oligopeptides are not hydrolyzed extracellularly and remain intact until transported into the cell cytoplasm (Perry et al., 1994 ; Steiner et al., 1994 ; Song et al., 1996 ;
Lubkowitz et al., 1997 , 1998 ; Hauser et al., 2000 ).
After transformation with each of the AtOPT plasmids, the
S. cerevisiae BY4730 transformants SK101 to SK107 were
tested for their ability to grow in the presence of the tetra-, and
pentapeptides KLLG, KLGL, KLLLG, or YGGFL. As shown in Figure
4A and Table
I, AtOPT1, 4, 5, 6, and 7 were able to
support prototrophic growth in the presence of 200 µM KLLLG. In addition, AtOPT4 also mediated uptake of KLGL (at 200 µM) and KLLG (at 100 µM; Fig. 4B). The growth obtained was
comparable with that shown by the positive control (i.e. BY4730
expressing CaOpt1p). These data show that AtOPTs (excluding AtOPT2 and
AtOPT3) are functional tetra- and pentapeptide transporters.

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Figure 4.
Peptide growth assays. S. cerevisiae
BY4730 strain transformed with pDB20 (vector alone), or expressing
CaOpt1p, Opt1p, or AtOPT1-7 were tested for their ability to use
Leu-containing peptides (i.e. KLLG, KLGL, KLLLG) to fulfill the
auxotrophic requirement for Leu. A, 200 µM
KLLLG. The cell number added to each well is shown. B, 200 µM KLGL (left) and 100 µM KLLG (right).
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Previously, Opt1p from S. cerevisiae was reported to
transport Leu-enkephalin (YGGFL), Met-enkephalin (YGGFM; Hauser et
al., 2000 ), and GSH (Bourbouloux et al., 2000 ). As shown in Table I, our experiments showed that BY4730 expressing Opt1p grew well in the
presence of YGGFL. However, no growth was observed with YGGFL when
cells were expressing any of the various AtOPTs (Table I). Uptake
studies using [3H]GSH failed to reveal any
uptake when yeast cells were expressing any of the AtOPTs, whereas,
under similar conditions, Opt1p supported uptake of GSH (data not
shown). Other studies using various di-and tripeptides (e.g.
L-L, G-G-F) as sources of Leu showed no growth of
yeast expressing the various AtOPTs (data not shown).
AtOPT4 Mediates the Uptake of KLG-[3H]L
Few of the possible 160,000 (204) tetra- and
3,200,000 (205) pentapeptides containing the 20 naturally occurring amino acids are commercially available. Therefore,
based on the results in Table I, we synthesized
KLG-[3H]L and tested the ability of AtOPT4 to
uptake this tetrapeptide when expressed in yeast. As shown in Figure
5, yeast cells expressing AtOPT4
accumulated KLG-[3H]L to a level significantly
above the controls. However, this level of uptake was much less than
that mediated by CaOpt1p from C. albicans. Transport of
substrate at 0°C by both CaOpt1p and AtOPT4 was attenuated and
similar to that of the negative control (empty vector, pDB20). These
data indicate that AtOPT4 does mediate the uptake of
KLG-[3H]L to a level significantly above
background and confirm the results from the growth assays (Fig. 4;
Table I). However, this peptide appears to be a poor substrate. Given
the large number of possible tetrapeptides and the few available to
test, it is would have been surprising to find that KLGL is an ideal
substrate.

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Figure 5.
Uptake of KLG-[3H]L by
S. cerevisiae BY4730 transformants. Uptake of
KLG-[3H]L after 30 min at 30°C or 0°C for
cells transformed with pSK104 (AtOPT4), pCaOPT1 (CaOpt1p from C. albicans), and 30°C for cells containing the empty vector pDB20.
Uptake is expressed in nanomoles per milligram dry weight on the left
y axis, and fraction of uptake as compared with the positive
control of CaOpt1p at 30°C on the right y axis. Data shown
represent the average of three replicates ± SD.
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DISCUSSION |
Searching of the available Arabidopsis sequences using the CaOpt1p
sequence identified nine possible OPT orthologs (AtOPT1-AtOPT9). Both
the ability of AtOPT4 to take up KLG-[3H]L and
the ability of AtOPT1, 4, 5, 6, and 7 to promote growth of a yeast
strain defective in peptide transport demonstrates that these are
bonafide OPT transporters. Sequence comparisons suggest that the
Arabidopsis proteins comprise a distinct subfamily of OPT peptide
transporters. All OPT family members (plant and fungus) appear to be
integral membrane proteins with 12 to 14 predicted transmembrane
domains. The availability of these AtOPT sequences allowed us to
identify two highly conserved sequence motifs found in all OPT members.
These motifs are found in regions predicted to be hydrophilic
suggesting that they are probably critical to function. As is the case
for the yeast OPTs, no significant sequence similarity was found
between the AtOPTs and members of the ABC or PTR families of peptide
transporters. Analysis of the expression of the various AtOPTs suggests
that these proteins likely play distinct roles in the plant. Those
proteins showing the highest sequence similarity also appeared to have
comparable tissue-specific expression patterns, suggesting that they
have related function.
Unfortunately, very few peptide substrates applicable to the yeast
strain utilized are commercially available. Therefore, we synthesized
the majority of the substrates used in this study, none of which
appeared to be excellent substrates for transport. The nature of the
physiological substrates for the various AtOPTs remains an important,
unanswered question. Of all of the substrates tested (including di-and
tripeptides), the AtOPTs were only able to mediate the uptake of
selected tetra-and pentapeptides. Therefore, the data would suggest
that their physiological substrates are likely small peptides, larger
than a tripeptide. The presence of several OPT transporters in
Arabidopsis suggests that these proteins are important and, therefore,
small peptides may play an important physiological role in plants.
Although the function of these transporters may be strictly
nutritional, it is interesting to speculate that they could also
mediate the transport of important regulatory molecules (e.g.
hormone-peptide conjugates).
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MATERIALS AND METHODS |
Sequence Comparisons
The Arabidopsis orthologs were identified by comparison of the
CaOpt1p sequence (Lubkowitz et al., 1997 ) to the data in the GenBank
database using the TBLASTN 2.1.1 algorithm (Altschul et al., 1990 ,
1997 ). These orthologs were named AtOPT1 to
AtOPT9. The map positions of these Arabidopsis orthologs
were determined based on the genomic sequence information of the BAC
clones or P1 clones that harbor the Arabidopsis orthologs (Fig.
1A).
All of the OPT sequences were compared using MegAlign (DNASTAR). This
led to the identification of two conserved motifs found in all OPT
proteins. A dendogram comparing the various OPT sequences was generated
using the CLUSTAL method in MegAlign under the default parameters.
Hydrophilicity plots for AtOPT1 through -7 were generated based on the
Kyte and Doolittle (1982) method using Protean sequence analysis
software (DNASTAR) under default parameters. The putative transmembrane
domains were predicted by the PRED-TMR algorithm (version 1.0; Pasquier
et al., 1999 ).
Analysis of Tissue-Specific Expression
Total RNA was isolated from 2- to 5-week-old whole Arabidopsis
(Landsberg erecta) plants grown under 16-h light/8-h
dark at 21°C. RNA was isolated using the Trizol reagent
(Invitrogen, San Diego) as described by the manufacturer.
Gene-specific primers from the 5'-untranslated region of
each AtOPT were designed by analyzing the DNA sequence
of each gene using Primer3
(http://www.genome.wi.mit.edu/cgi-bin/primer/primer3_www.cgi). The gene-specific primers used for full length cDNA cloning in this study are as follows: AtOPT1-RC3,
5'-GCCAGGACGGGAAAAAGGAGCTTGAAGAC-3'; AtOPT2-RC2,
5'-TGACGTCGTCTCCTTCACCAAATTCCA-3'; AtOPT3-RC2,
5'-GGCCAACAACGCAACTTTGTCTGGTACTTCA-3'; AtOPT4-RC1,
5'-TCACACACAAACTAAACCGGAATGG-3'; AtOPT5-RC2,
5'-AATGTCAGGTCATTAACACAGGTTGCT-3'; AtOPT6-RC1,
5'-GGCCCCAAAGAACGGAACACTCACTCT-3'; AtOPT7-RC1,
5'-GGCCGTCAGATTCACATCTCCCCAAAA-3'. First strand cDNA synthesis was
performed using M-MLV reverse transcriptase (Promega, Madison, WI)
using the AP adapter primer (Invitrogen), according to the
manufacturer's protocol. The products of this reaction were then used
in PCR reactions containing the gene-specific primers and the Abridged
Universal Amplification Primer (Invitrogen) primer under the following
conditions: 96°C for 5 min (1 cycle), 94°C for 15 s, 65°C
for 30 s, 72°C for 2 min (36 cycles), and 72°C for 4 min (1 cycle). The PCR products obtained were cloned into the pCR2.1 TOPO
cloning vector following the instructions provided in the TOPO TA
cloning kit (Invitrogen). The complete DNA sequence (both strands) was
determined for each of the cDNA clones and checked to confirm the
presence of both the translational start and stop codons.
Because of the sequence similarity among the various
AtOPTs, RT-PCR, using gene-specific primers was used to
measure mRNA levels in various tissues. Total RNA from 3- to 5-week-old
plant flower, leaf, bolting stem, and root was isolated using the
Trizol reagent. The PCR conditions were identical to those described above. However, as an internal control, a 629-bp cDNA fragment of
Actin2 was also amplified using specific primers
(Actin2-for, 5'-GTTGGTGATGAAGCACAATCCAAG-3', and Actin2-rev,
5'-CTGGAACAAGACTTCTGGGCATCT-3'). Amplification of the
Actin2 and AtOPT cDNA was done in the
same tube. After PCR, the products were electrophoresed in agarose gels
and then blotted. AtOPT expression was visualized by
Southern hybridization using a 32P-labeled probe made from
the cDNA clone of the respective AtOPT gene. Likewise,
the level of Actin2 expression was visualized by
hybridizing to a labeled actin gene probe. The CPM/mm2
values for each hybridization were obtained with an instant imager (Packard Instrument Co., Meriden, CO) and calculated using the following equation: relative gene expression = cpm/mm2
of AtOPTs/the cpm/mm2 of
Actin2.
Synthesis of Peptides
KLGL, KLLG, and KLLLG were prepared by conventional automated
solid phase peptide synthesis on an synthesizer (model 433A, Applied
Biosystems, Foster City, CA). Peptides were cleaved from the resin with
trifluoroacetic acid and purified using a C18 reversed phase column (19 × 300 mm) to >99% homogeneity with a 5% to
20% linear gradient of acetonitrile in water over 60 min. The
Mr and amino acid composition were verified
using mass spectrometry.
Growth Assays
Full-length cDNAs of AtOPT1 to
AtOPT7 were cloned into the pDB20 vector, under the
control of the constitutive ADH promoter (Becker et al.,
1991 ) using either the in vivo ligation method (Gietz et al., 1991 ) or
in vitro cloning method.
AtOPT1 and AtOPT2 full-length
cDNAs including the translation start and stop codons were amplified
with the respective forward and reverse gene-specific primers including
the intact NotI sites, and cotransformed with the
BstXI digested pDB20 (URA3) vector into
Saccharomyces cerevisiae BY4730 (MAT leu2 0
met15 0 ura3 0). Yeast transformants with in vivo ligated
plasmids (pSK101 [AtOPT1] and pSK102
[AtOPT2]) were selected on 0.2% (w/v) casamino
acid medium lacking uracil. Plasmids were isolated from cells that grew
on this medium and re-transformed into Escherichia coli. NotI enzyme digestions of re-isolated plasmids from E.
coli were used to confirm the cloning of AtOPT1
and AtOPT2 in pSK101 and pSK102, respectively. Plasmids
pSK101 and pSK102 were transformed into S. cerevisiae
BY4730 to create strains SK101 and SK102, respectively.
Full-length cDNAs of AtOPT3, 4,
5, 6, and AtOPT7 were
cloned into the pDB20 vector using a normal in vitro cloning method. AtOPT3, AtOPT6, and AtOPT7
full-length cDNAs including the translation start and stop codons were
amplified using the respective gene-specific primers with the
NotI sites. The resulting PCR products were digested with NotI and ligated into the NotI site
of the pDB20 vector. AtOPT4 and AtOPT5
full-length cDNAs were also PCR amplified using 5'-untranslated region
gene-specific primers and the AUAP-NotI primer as 3'
primer and also cloned into the NotI site of the pDB20
vector. The orientation of each gene in the pDB20 vector was determined
by digestion with various restriction enzymes. The resulting clones
were transformed into S. cerevisiae BY4730 and
transformants were selected on 0.2% (w/v) casamino acid medium lacking uracil. The resulting transformants were named SK103 to SK107,
corresponding to AtOPT3 to AtOPT7, respectively.
Growth assays were performed as described previously (Hauser et al.,
2000 ). SK101 to SK107 were grown overnight in a Pro liquid medium
containing yeast nitrogen base without amino acids and ammonium
sulfate, 2% (w/v) Glc, 0.1% (w/v) Pro, 228 µM
Leu, and 191 µM Met (Hauser et al., 2000 ). The cells were
harvested by centrifugation, washed twice with sterile distilled water,
and resuspended in sterile distilled water to 2 × 107
cells/mL or 2 × 106 cells/mL. Five microliters of
each suspension (1 × 106 cells or 1 × 105 cells, respectively) was applied as a small spot to a
solid growth medium supplemented with a specific tetra- and
pentapeptides (i.e. KLLG, KLGL, KLLLG, or YFGGL) instead of Leu and
incubated at 30°C for 110 h. Growth was scored every 24 h
as uniform colony formation compared with both negative (pDB20 vector
only) and positive controls (CaOpt1p and Opt1p). The medium for the
growth assay used Pro (0.1%) as a nitrogen source and was supplemented
with either 100 or 200 µM of a specifically synthesized
tetra-or pentapeptide (KLLG, KLGL, YFGGL, or KLLLG) as indicated. 191 µM Met was included in the medium to fulfill the
auxotrophic requirement of the strain BY4730 for this amino acid.
Leu-enkephalin (YGGFL) was purchased from Sigma (St Louis).
Met-enkephalin (YGGFM) from Sigma was also purchased but found to
contain a high level of Met amino acid contamination that prevented its use.
Radiolabeled Peptide Uptake Assays
Radioactive uptake assays with KLGL or GSH were initiated by
combining equal volumes of prewarmed cells in 2% (w/v) Glc
(30°C) and 2× uptake assay medium (2% [w/v] Glc, 40 mM sodium citrate/potassium buffer, pH 5.5, and 500 µM KLGL or 500 µM GSH [Sigma; New England Nuclear, Boston] at 0.5 µCi/mL of [3H]labeled
substrate). Cells were incubated either with medium at 30°C or 0°C
for 30 min with KLGL or 12 min with GSH. Medium containing GSH was
constantly kept under nitrogen until it was mixed with cells, to
prevent its oxidation. At the end of the incubation period, aliquots
(90 µL) were removed, and placed on a membrane filter (HAWP,
Millipore, Bedford, MA). The filter was immediately washed four times
by vacuum filtration with 1 mL of ice water. Filters were counted by
liquid scintillation spectrometry, and results were reported as
nanomoles per milligram dry weight. KLGL uptake assays were done in
triplicate, whereas GSH uptake was measured in quadruplicate.
 |
ACKNOWLEDGMENT |
We acknowledge the contribution of Dr. Chengdong Zhang for
cloning of the AtOPT1 gene.
 |
FOOTNOTES |
Received April 9, 2001; returned for revision June 19, 2001; accepted October 16, 2001.
1
This work was supported by the U.S. Department
of Agriculture (grant no. 99-35304-8194).
2
Present address: Carnegie Institution of Washington, 260 Panama Street, Stanford, CA 94305-1297.
*
Corresponding author; e-mail gstacey{at}utk.edu; fax 865-974-4007.
Article, publication date, and citation information can be found at
www.plantphysiol.org/cgi/doi/10.1104/pp.010332.
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