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First published online May 1, 2003; 10.1104/pp.103.020800 Plant Physiology 132:861-869 (2003) © 2003 American Society of Plant Biologists AtCHIP, a U-Box-Containing E3 Ubiquitin Ligase, Plays a Critical Role in Temperature Stress Tolerance in Arabidopsis1Department of Biological Sciences, Texas Tech University, Lubbock, Texas 79409 (J.Y., J.W., Q.L., H.Z.); Department of Cell and Developmental Biology, School of Medicine, University of North Carolina, Chapel Hill, North Carolina 275997090 (J.R.H., C.P.); and Program in Molecular Cardiology and the Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina 275997075 (J.R.H., C.P.)
The Arabidopsis gene AtCHIP encodes a protein with three tetratricopeptide repeats and a U-box domain, which is structurally similar to the animal CHIP proteins, a new class of E3 ubiquitin ligases. Like animal CHIP proteins, AtCHIP has E3 ubiquitin ligase activity in vitro. AtCHIP is a single-copy gene, and its transcript is up-regulated by several stress conditions such as low and high temperatures. However, increased AtCHIP expression alone was not correlated with increased stress tolerance; in fact, overexpression of AtCHIP in Arabidopsis rendered plants more sensitive to both low- and high-temperature treatments. Higher electrolyte leakage was observed in leaves of AtCHIP overexpression plants after chilling temperature treatment, suggesting that membrane function is likely impaired in these plants under such a condition. These results indicate that AtCHIP plays an important role in plant cellular metabolism under temperature stress conditions.
In an effort to identify proteins that bind to GF14 (a 14-3-3 protein) in a yeast two-hybrid screening, an Arabidopsis gene AtCHIP that encodes a protein with three tetratricopeptide repeats (TPRs) and a U-box domain was isolated. The TPR is a 34-amino acid repeat that participates in protein-protein interactions (Blatch and Lassle, 1999
In the eukaryotic ubiquitylation system, there are only one or two ubiquitin-activating enzymes (E1), a few dozens of ubiquitin-conjugating enzymes (E2), and a large number of ubiquitin ligases (E3). E3 ligases provide the specificity on which proteins to be ubiquitylated and degraded through the ubiquitylation/proteasome pathway (Vierstra and Callis, 1999
AtCHIP Is an E3 Ubiquitin Ligase
Sequence comparison of AtCHIP with animal CHIPs from human, mouse, and fruitfly is shown in Figure 1. Like animal CHIPs, AtCHIP contains three TPRs at N-terminal side and a U-box domain at the C-terminal side. They generally share over 54% homology within TPRs and 75% homology within the U-box domains. Recent studies indicated that U-box-containing proteins such as CHIPs are a new class of E3 ubiquitin ligases (Demand et al., 2001
AtCHIP can use ubiquitin, E1, and E2 of animal sources to make ubiquitin polymers very efficiently (Fig. 2).
We conducted a genomic DNA-blot analysis on AtCHIP using a cDNA clone as a probe, and the result indicates that AtCHIP is a single-copy gene in Arabidopsis (Fig. 3). Sequence analysis showed no restriction site for enzymes BamHI and XhoI, one site for EcoRI, and two sites for HindIII in the AtCHIP gene. Restriction digestion of Arabidopsis genomic DNA with these enzymes gave rise to hybridizing bands exactly as expected: one band from BamHI and XhoI, two bands from EcoRI, and three bands from HindIII digestion (Fig. 3). Because many TPR-containing proteins are involved in stress response in organisms that range from yeast, plant, mouse, to human (Nicolet and Craig, 1989
To study the physiological functions of AtCHIP in Arabidopsis, we created transgenic plants that overexpress AtCHIP by fusing its full-length cDNA sequence to a strong promoter, the cauliflower mosaic virus 35S promoter in the pBI19-derived vector (Jefferson et al., 1987
We analyzed several high and low-expression lines by western blot and found that all high-expression lines contained increased levels of AtCHIP protein, as compared with the low-expression lines and wild-type plants. An example of our western-blot analysis is shown in Figure 6. Plants that overexpress AtCHIP have at least 4- to 5-fold more AtCHIP protein based on the densitometry analysis. All high-expression lines and several low-expression lines selected from the northern-blot analyses were studied further for their growth behaviors under normal, low, and high temperatures. These plants looked healthy with normal seed yield under normal temperature conditions (between 22°C26°C). However, after they were moved to a growth chamber with a temperature set at 12°C for 42 d or 7°C for 32 d, all high-expression lines demonstrated sensitivity to chilling temperatures: very little growth, whereas the low-expression lines and unrelated transgenic plants demonstrated similar phenotypes as wild-type plants (Figs. 7 and 8). In a higher temperature treatment (34°C for 2 h and 24°C for 22 h for 24 d), these high-expression plants produced much less seeds than wild-type plants (Fig. 9). In fact, most of them did not produce siliques. Even if a few siliques were produced, seed yield was significantly reduced. These experiments were repeated two more times in the next two generations, and similar results were obtained for each of the 20 independent high-expression lines. Based on the northern- and western-blot data, there is a direct causal relationship between the expression of AtCHIP transgene and the cold- or heat-sensitive phenotypes.
The temperature-sensitive phenotype observed in AtCHIP overexpression plants indicates that there might be cellular damages that adversely affected plant growth and development under temperature stress conditions. To test this possibility, we measured the electrolyte leakage of leaves from both AtCHIP transgenic and wild-type plants after chilling temperature treatment for 2 weeks and found that the electrolyte leakage in AtCHIP high-expression plants is significantly higher than that of wild-type and low-expression plants (Fig. 10), suggesting that AtCHIP overexpression might lead to membrane damage under chilling temperature conditions. However, this damage was not severe enough to cause plants to die under such conditions.
Based on the above data, AtCHIP clearly plays an important role in temperature stress tolerance in Arabidopsis. Although AtCHIP transcript is upregulated by several stress conditions, there is no correlation between increased AtCHIP expression and increased temperature stress tolerance. In fact, overexpression of AtCHIP renders plants more sensitive to both low- and high-temperature stresses. An increase in AtCHIP expression alone did not increase stress tolerance, which is not unexpected because both low and high temperatures induce expression of many genes (Thomashow, 1999
The mode of action of AtCHIP in plant cells may involve other proteins, like what happens with animal CHIP proteins. The function of the mouse CHIP is associated with chaperones Hsp70 and Hsp90 that participate in refolding nonnative proteins or mediating degradation of their substrates through the ubiquitin-proteasome machinery (Höhfeld et al., 2001
Under normal conditions, overexpression of AtCHIP may not affect plant growth and development because few damaged proteins are produced in plant cells. However, under temperature stress conditions, overexpression of AtCHIP may lead to quick degradation of some denatured proteins that may be otherwise refolded back to functional proteins by Hsp70 and Hsp90. Repair or removal of damaged proteins by chaperones or proteasome under stress conditions appear to be regulated by cochaperones such as AtCHIP, and both protein refolding and degradation are essential for plant cells to cope with stress conditions. There is apparently a mechanism that maintains the optimal level of AtCHIP expression, and any disturbances in the delicate regulation of chaperone functions by AtCHIP would likely lead to a compromised defense against temperature stress conditions in plants. In humans, the cystic fibrosis transmembrane conductance regulator (CFTR), a plasma-membrane chloride ion channel protein, is regulated by Hsc70 and CHIP (Meacham et al., 2001 Based on the above reasoning, we hypothesize that AtCHIP functions with certain chaperone proteins in protein quality control, and AtCHIP's substrates may include membrane channel proteins. However, the reasoning is logical considering the fact that AtCHIP is highly homologous to animal CHIPs, but other possibilities do exist. For example, AtCHIP may interact with proteins other than molecular chaperones or channel proteins, and the increased expression of AtCHIP may disrupt the stoichiometry of AtCHIP and those interacting proteins, which affects certain aspects of cellular metabolism under temperature stress conditions, leading to altered membrane permeability. Identification of AtCHIP's interacting proteins or substrate proteins may reveal how AtCHIP is involved in temperature stress tolerance or how AtCHIP influences protein folding and degradation metabolisms in plant cells. Because AtCHIP is the first plant U-box E3 ubiquitin ligase characterized, further understanding of the molecular mechanism of AtCHIP's involvement in protein ubiquitylation and stress response will contribute significantly to our understanding of cellular metabolism that is central to plant growth and development under normal and stress conditions.
Isolation of AtCHIP
AtCHIP was identified as one of the GF14
AtCHIP was expressed in Escherichia coli by using the pET system (Novagen, Madison, WI), and then AtCHIP was purified according to the manufacturer's protocol. Polyclonal antibodies were raised against purified AtCHIP at Animal Pharm Services, Inc. (Healdsburg, CA). In vitro ubiquitylation reaction with purified AtCHIP as the E3 ligase was carried out according to the condition described by Jiang et al. (2001
A full-length AtCHIP fragment was amplified from a cDNA library with PCR using primers 5'-ATCGGATTCATGGTTACAGGCGTGGCTTCC-3' (forward) and 5'-CATGAGCTCTCAACAACCCATCTTGTAAGCC-3' (reverse) and subcloned into the vector pBI121 (Jefferson et al., 1987
Genomic DNA of wild-type Arabidopsis (ecotype C24) was prepared according to the method of Dellaporta et al. (1983
Leaf proteins were extracted by grinding three mature leaves in a mortar in extraction buffer (50 mM Na2HPO4 [pH 7.0] and 1 mM EDTA). The crude extracts were centrifuged in a microfuge at 14,000 rpm for 10 min, and the supernatants, which contain mainly cytosolic proteins, were added to an equal volume of 2x SDS loading buffer (125 mM Tris-Cl, 2% [w/v] SDS, 20% [v/v] glycerol, 200 mM dithiothreitol, and 0.01% [w/v] bromphenol blue [pH 6.8]). Protein concentration in the extraction buffer was determined by the Bradford (1976
Arabidopsis seeds of wild-type plants, unrelated transgenic plants, and homozygous AtCHIP transgenic plants of T4 generation were planted into soil mix and cold treated at 4°C for 6 d, then moved to room temperature under continuous white fluorescent light. For cold treatment, 18-d-old plants were moved to refrigerators that were set at 12°C and 7°C, respectively. Plants in the refrigerators were provided with white fluorescent light (50 µE m2 s1) and allowed to grow for 5 to 6 weeks. For heat treatment, 18-d-old plants were moved to a growth chamber with a temperature cycle set at 34°C for 2 h and 24°C for 22 h each day for 3 to 4 weeks. The light intensity in the growth chamber was around 60 µE m2 s1. For northern-blot analysis shown in Figure 4, total RNAs were isolated from 19-d-old wild-type plants that were treated with 200 mM NaCl, 100 µM Na2SeO4, 7°C (cold), and 38°C (heat) for 24 h, respectively.
Four-week-old wide-type and AtCHIP transgenic plants were moved to a refrigerator that was set at 7°C and provided with white fluorescent light (50 µE m2 s1). After 2 weeks in the refrigerator, two leaves were cut from each plant and rinsed briefly in distilled water, then placed immediately in a tube of 4 mL of distilled water. The electrolyte content was measured after the tubes were agitated gently for 3 h by using an Orion 120 conductivity meter (Expotech USA Incorporated, Houston, TX). After the solutions and leaves were autoclaved, the electrolyte content was measured again. The ratio of electrolyte content before and after autoclave was used as an indicator for membrane damage after cold treatment. Six repetitions for each treatment were conducted.
We thank Dr. Karam Singh for providing the genomic GST6 clone, Dr. Ming-che Shih for providing the antibodies against cytosolic glyceraldehyde-3-phosphate-dehydrogenase, and the Arabidopsis Biological Resource Center (Ohio State University, Columbus) for proving the polyubiquitin gene UBQ3 (ATTS0348). We thank Cixin He for reading the manuscript. Received January 21, 2003; returned for revision March 4, 2003; accepted March 24, 2003.
Article, publication date, and citation information can be found at www.plantphysiol.org/cgi/doi/10.1104/pp.103.020800.
1 This work was supported by grants from the Texas Advanced Technology Program.
2 Present address: Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030. * Corresponding author; e-mail brahz{at}ttacs.ttu.edu; fax 806-742-2963.
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