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First published online August 7, 2003; 10.1104/pp.103.023457 Plant Physiology 133:161-169 (2003) © 2003 American Society of Plant Biologists Golden Indica and Japonica Rice Lines Amenable to Deregulation1Institute for Plant Sciences, Swiss Federal Institute of Technology, CH-8092 Zurich, Switzerland (T.T.C.H., I.P.); and University of Freiburg, Center for Applied Biosciences, Schänzlestrasse 1, D-79104 Freiburg, Germany (S.A.-B., P.S., P.B.)
As an important step toward free access and, thus, impact of GoldenRice, a freedom-to-operate situation has been achieved for developing countries for the technology involved. Specifically, to carry the invention beyond its initial "proof-of-concept" status in a Japonica rice (Oryza sativa) cultivar, we report here on two transformed elite Indica varieties (IR64 and MTL250) plus one Japonica variety Taipei 309. Indica varieties are predominantly consumed in the areas with vitamin A deficiency. To conform with regulatory constraints, we changed the vector backbone, investigated the absence of beyond-border transfer, and relied on Agrobacterium tumefaciens-mediated transformation to obtain defined integration patterns. To avoid an antibiotic selection system, we now rely exclusively on phosphomannose isomerase as the selectable marker. Single integrations were given a preference to minimize potential epigenetic effects in subsequent generations. These novel lines, now in the T3 generation, are highly valuable because they are expected to more readily receive approval for follow-up studies such as nutritional and risk assessments and for breeding approaches leading to locally adapted variety development.
We reported previously on a genetically modified rice line, frequently termed GoldenRice, engineered to synthesize and accumulate pro-vitamin A ( -carotene) in the endosperm (Ye et al., 2000Contractual issues have largely been solved to date, including a "freedom-to-operate" intellectual property situation for GoldenRice, the inventors, and their licensees. Free licenses have been granted by our license collaborators for patents used in this research designed to benefit resource-poor farmers in developing countries. The next step to be taken is to find regulatory acceptance in these countries, the prerequisite for most of the tasks ahead such as to allow grain production enabling feeding trials and to begin with diversified variety development.
GoldenRice as published (Ye et al., 2000
To conform with regulatory requirements, the generation of defined DNA integrations along with the minimization of extraneous DNA from the vector backbone (Kononov et al., 1997 To ultimately provide a useful product beyond the "proof-of-concept" stage, more issues needed to be addressed. The previously described lines were generated using the Japonica rice line Taipei 309 because it is relatively easy to transform. However, Indica cultivars, although much less amenable to transformation, are the most predominantly grown and consumed in countries where VAD prevails. Therefore, we set out to engineer the pathway into two elite Indica cultivars of Southeast Asia, namely, IR64 and MTL250. These are to be used in breeding approaches to transfer the trait into additional, locally important varieties. Alternatively, because breeding of the trait from Taipei 309 into Indica varieties is feasible, we decided to transform this cultivar also. Here, we report on a Japonica variety line that conforms to these requirements. Further, as a next practical step, we also demonstrate the successful use of the GoldenRice technology in transformed Indica elite varieties. The present publication also represents our first progress report on the GoldenRice humanitarian project.
We transformed two Indica cultivars, namely IR64 and MTL250, and one Japonica cultivar (Taipei 309). IR64 is popular worldwide, whereas MTL250 is widely used in Vietnam. All these Indica cultivars possess a good agronomic background and good grain quality. The vector pCaCar (Fig. 1) was used throughout in the present study in the A. tumefaciens-mediated transformation. PMI was used as the selectable marker gene. The construct combines the bacterial phytoene desaturase gene crtI, fused with the pea (Pisum sativum) RuBisCo small subunit transit-encoding sequence (Misawa et al., 1993 - and -carotene and derived xanthophylls (Ye et al., 2000
As given in Table I, the T1 seeds were first phenotypically selected by visible color after polishing. Segregating seed populations with notably yellow grains (about 20% of the transformants) were subjected to carotenoid analysis by HPLC and photometry (see below). The phenotypically best lines were then checked for the absence of beyond-border transfer by PCR (as shown in Fig. 2) for some representative examples; more than one-half of the lines examined were positive in this respect (Table I). The quality of integration and the integration number were judged by Southern hybridization with selected T0 transformants. The presence of the expected bands for the crtI cassette (3.2 kb) and psy cDNA (1.57 kb) is shown in Figure 3, taking some IR64 and Taipei 309 lines as an example; very similar patterns were observed for MTL250 (not shown, see Table I). The numbers of independent transgenic plants (T0) confirmed by Southern-blot analysis were 23 for IR64, seven for MTL250, and 27 for Taipei 309. A simple integration pattern of the transgenes (one-three copies) was predominant, and transgene recombination did not occur.
Based on the sum of these data (see also Table I) and the carotenoid analysis done with the T1 seeds (see below), lines were selected to produce self-pollinated progeny (T2 seeds).
T1 segregating seeds (including white and colored) were subjected to carotenoid analysis. This was first done photometrically for quantification, followed by HPLC to determine the distribution of the individual carotenoids. However, because we soon noticed isoprenoid compounds other than carotenoids were changed relative to the controls (see below), internal standardization needed to be applied. Figure 4 shows an HPLC trace as an example allowing the simultaneous quantification of carotenoids, tocopherols/tocotrienols (vitamin E), and
Promising lines (examples are shown in Fig. 6) were passed into T2 seed production (Table I) and re-analyzed in greater detail. Data on the best lines (underlined in Table I) are given in Figure 7. In these seeds, the carotenoid content was about the same or higher as compared with the parent T1 generation (Fig. 7A), as one would expect with a stable line. Some variation in both carotenoid content and pattern was observed, probably representing some degree of segregation and/or natural variability. As observed in T1, the carotenoid amount in the Japonica line (1.2 µg g-1 dry mass) exceeded that in the Indica lines (around 0.8 µg g-1 dry mass).
A recurrent observation in our transformation experiments using the given transgene combination is a notable increase in most lines of a compound group that we identified as
Vitamin E compounds (tocopherols and tocotrienols) represent another class of isoprenoids present in rice grains. The presence of the embryo needs to be considered here because it contains large amounts of
Rice feeds nearly one-half of the world's population, but it is a poor source of many essential micro-nutrients. As a consequence, and due to poverty and limited access to more diversified foods, deficiencies of iron, zinc, iodine, and vitamin A prevail in rice-consuming developing countries. About 250 million people suffer from VAD (Underwood, 2000
Naturally occurring vitamin A derives entirely from carotenoids with provitamin A activity. GoldenRice has, so far, only been an experimental Japonica line. Because the malnourished population lives mainly on Indica rice, it was essential to transfer the trait to Indica varieties. For this purpose, the locally important varieties in VAD-affected areas are currently being identified on the basis of needs assessments, as initiated in India by the Indo-Swiss Collaboration in Biotechnology.
In the current publication, we present three novel Indica and Japonica GoldenRice lines that have been specifically adapted to comply with regulatory requirements. To meet these standards by producing well-defined integration events will hopefully open the way to receiving approval for field testing and for bioavailability studies; such studies are currently in an advanced planning stage. We also expect that our new lines will facilitate the start of breeding approaches leading to variety development. Bioavailability studies especially are required to determine the uptake of the provitamin from the endosperm food matrix and, thus, evaluate the usefulness of the current lines to deal with the problem of VAD. Moreover, such data will provide guidance on the amount of the provitamin to be produced in future versions of GoldenRice. This effort is being accompanied by ex ante studies on projected effects (Zimmermann and Qaim, 2002 Our three candidate rice lines now growing in the T3 generation in greenhouses are Taipei 309 (Japonica), 48-67CR58; and IR 64 (Indica), 37B-2b and 37B-5. These lines produced T2 grains with about 1.2, 0.4, and 0.8 µg carotenoid g-1 dry mass, respectively. Because in our chemical analyses we tested grains randomly and did not select yellow ones, these values will increase somewhat in later generations as these lines are bred to homozygosity. Anticipating the need to further increase the content to nutritionally required levels of the provitamin, we already have parallel investigations and rice transformations under way, aiming with several different approaches at increasing carotenoid production in the endosperm by a factor of 2 to 3. The production of transgenic lines in different Indica varieties demonstrates the applicability of the technology to diverse rice genotypes; this has also been shown by biolistic approaches elsewhere (S. Datta, personal communication).
Consistent with the results on our published Japonica prototype lines (Ye et al., 2000
Another novel observation we describe, namely the increased formation of
Construction of the Binary Vector pCaCar
In this study, a single binary vector (pCaCar) was used for all transformation experiments. The vector pCaCar was constructed in two steps. First, the hygromycin phosphotransferase gene of pCAMBIA 1200 (Cambia, Canberra, Australia) was replaced by the PMI gene to yield pCamanose. For this purpose, the PMI gene was isolated from p-Man 19 (Lucca et al., 2001
Immature embryos and embryogenic calli derived from immature embryos or mature seeds of the cultivars IR 64, MTL 250, and Taipei 309 were inoculated with A. tumefaciens strain LBA 4404 (Hoekema et al., 1984
Genomic DNA was isolated from frozen rice leaves following the method of McCouch et al. (1988
Genomic DNA was extracted from frozen rice leaves using the Nucleon extraction and purification kit (Amersham). PCR reactions were carried out using 100 to 200 ng of genomic DNA, 10 µµ each primer, 200 µM dNTPs, and 2.5 units of Taq-polymerase (Eurobiotaq, Laboratores EUROBIO, Les Ulis, France). After an initial denaturation step for 5 min, the PCR reactions were performed for 35 cycles including 1 min of denaturation at 95°C, 1 min of annealing at 58°C, and finally 1 min of polymerization at 72°C. For monitoring beyond-border transfer, two PCR reactions were performed for each side (A and B, left border; and C and D, right border). PCR reactions A and C confirmed the transformation event and served as a positive control for checking the quality of the isolated genomic DNA and the PCR conditions. This PCR reaction should yield a product with all the transgenes, whereas PCR reactions B and D will lead to a product only in case of beyond-border transfer. Reactions A and B and C and D shared a primer that binds within the borders (see scheme in Fig. 2). For the left border, we used the following primers: reaction A, primer 1, 5' CGCTATTGCTGAATGTGGTG 3' (annealing site: 14,189-14,170 bp), primer 2, 5' CGGGGGATCTGGATTTTAGT 3' (annealing site: 13,522-13,541 bp); and reaction B, primer 1, 5' CGCTATTGCTGAATGTGGTG 3' (annealing site: 14,189-14,170 bp), primer 3, 5' CTGCCTGTATCGAGTGGTGA 3' (annealing site: 13,363-13,382 bp). To examine the right border, we used the following primers: reaction C, primer 4, 5' CAGCGTACTGATGCTCCAAG 3' (annealing site: 6,432-6,451 bp), primer 5, 5' TTTAAACTGAAGGCGGGAAA 3' (annealing site: 6,983-6,964 bp); and reaction D, primer 4, 5' CAGCGTACTGATGCTCCAAG 3' (annealing site: 6,432-6,451 bp), primer 6: 5' AAACCTTTTCACGCCCTTTT 3' (annealing site: 7,077-7,058 bp). In case of beyond-left-border transfer, a third PCR reaction was performed to confirm that the chloramphenicol resistance gene (CAT) had not also been transferred into the transgenic plants. For this purpose, the following primers were used: chloram, back, 5' ATCACAAACGGCATGATGAA 3' (annealing site: 12,307-12,326 bp); and chloram, forward, 5' GCAGTCGCCCTAAAACAAAG 3' (annealing site: 12,926-12907 bp). The reaction was performed as described above.
The self-pollinated seeds (T1 generation) of the transformants were grown in Murashige and Skoog medium (Murashige and Skoog, 1962
Dehusked seeds were polished overnight on a shaker at 200 to 220 rpm in petri dishes equipped with emery paper. Alternatively, we used a commercial grain polisher (Kett, Tokyo) at a polishing time of 60 s. In contrast to the first method, this procedure removes the embryo from Taipei 309 seeds. Polished seeds (0.5 g) were ground for 60 s to a fine powder using a Micro-Dismembrator (Braun, Melsungan, Germany). The powder in the Teflon capsules was resuspended in 2 mL of acetone at room temperature and transferred to a glass test tube, and as an internal standard, 200 µg of
For HPLC, a Waters (Eschborn, Germany) system equipped with a photodiode array detector (model 996) and a fluorescence detector (model 474; excitation 293 nm, emission 324 nm for tocopherol detection) was used. The separation was performed with a C30-RP column (YMC Europe, Schermbeck, Germany) using the solvent systems B: MeOH/tert-butyl-methyl ether/water (60:12:12 [v/v]) and A: MeOH/tert-butylmethyl ether (1:1 [v/v]). The column was developed with a linear gradient from 100% B to 43% B within 45 min, then to 0% B within 35 min, then maintaining the final conditions for another 30 min. Using a maxplot (400-500 nm), carotenoid peaks were integrated at their individual
Integrated tocopherol/tocotrienol fluorescence area units, with the aid of calibrated standard solutions (Sigma, Taufkirchen, Germany), were normalized with the following correction factors:
A related publication appeared recently (Dalta K, Baisakh N, Oliva N, Torrizo L, Abrigo E, Tan J, Rai M, Rehana S, Al-Babili S, Beyer P et al. Bioengineered golden indica rice cultivars with
We thank Prof. Wilhelm Gruissem (ETH Zurich) for his support. The skillful assistance of Ulricke Schneider-Ziebert (University of Freiburg), Katalin Konya (ETH Zurich), and Carmen Schubert (University of Freiburg) is gratefully acknowledged. We thank Dr. Katharina Jenny (Swiss Agency for Department and Cooperation, Berne) and Dr. Camilla Beech (Sygenta, Basel) for their very valuable discussions. Randall Cassada (University of Freiburg) corrected the English version of the manuscript. This paper is dedicated to Dr. Adrian Dubock (Syngenta), who from early on wasand remainsa most selfless and effective supporter of the GoldenRice humanitarian project and an invaluable mediator between the public and private sectors. Received March 12, 2003; returned for revision April 16, 2003; accepted June 9, 2003.
1 This work was supported by the Rockefeller Foundation (New York).
2 Present address: Cuu Long Delta Rice Research Institute, Omon, Cantho, Vietnam. * Corresponding author; e-mail peter.beyer{at}biologie.unifreiburg.de; fax 49-761-203-2675.
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