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First published online February 5, 2004; 10.1104/pp.103.032342 Plant Physiology 134:614-624 (2004) © 2004 American Society of Plant Biologists Cloning, Characterization, and Immunolocalization of a Mycorrhiza-Inducible 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase in Arbuscule-Containing Cells of Maize1Leibniz-Institut fuer Pflanzenbiochemie, Abteilung Sekundaerstoffwechsel, D06120 Halle (Saale), Germany
Colonization of plant roots by symbiotic arbuscular mycorrhizal fungi frequently leads to the accumulation of several apocarotenoids. The corresponding carotenoid precursors originate from the plastidial 2-C-methyl-D-erythritol 4-phosphate pathway. We have cloned and characterized 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR), catalyzing the first committed step of the pathway, from maize (Zea mays). Functional identification was accomplished by heterologous expression of sequences coding for the mature protein in Escherichia coli. DXR is up-regulated in maize roots during mycorrhization as shown at transcript and protein levels, but is also abundant in leaves and young seedlings. Inspection of sequenced genomes and expressed sequence tag (EST) databases argue for a single-copy DXR gene. Immunolocalization studies in mycorrhizal roots using affinity-purified antibodies revealed a DXR localization in plastids around the main symbiotic structures, the arbuscules. DXR protein accumulation is tightly correlated with arbuscule development. The highest level of DXR protein is reached around maturity and initial senescence of these structures. We further demonstrate the formation of a DXR-containing plastidial network around arbuscules, which is highly interconnected in the mature, functional state of the arbuscules. Our findings imply a functional role of a still unknown nature for the apocarotenoids or their respective carotenoid precursors in the arbuscular life cycle.
Arbuscular mycorrhiza (AM) is a widespread mutual symbiosis between the roots of more than 80% of terrestrial plants and about 150 fungal species. The fungi belong mainly to the recently described order Glomerales in the new phylum Glomeromycota (formerly Glomales within the Zygomycota; Schüssler et al., 2001
Despite the widespread distribution and ecological significance of the symbiosis, knowledge about signaling compounds or the role of secondary metabolites in the symbiosis is still poor (for review, see Strack et al., 2003
All isoprenoids, including carotenoids, are derived from the ubiquitous C5 building blocks isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). These precursors can be synthesized by two different routes: the classical mevalonate pathway in the cytoplasm or the alternative nonmevalonate pathway in plastids (Rohmer et al., 1993
Although DXR catalyzes the first committed step toward IPP and DMAPP formation, its role in the control of metabolic flux through the pathway remains unclear. Results obtained so far show that DXR catalyzes a rate-limiting step in some systems (Veau et al., 2000
Isolation and Characterization of a Maize DXR Clone
To clone a mycorrhiza-induced DXR cDNA, about 360,000 clones of a mycorrhizal maize root cDNA library were screened with a rice expressed sequence tag (EST) sequence (S11168) that showed high homology to known plant DXR sequences. After the first round of purification, 45 clones were subjected to further analysis, which resulted in 16 clones. Restriction mapping of the clones allowed the classification into three different groups, which was also confirmed by partial sequencing. The longest representatives of each group were fully sequenced on both strands. Two groups of clones (ZmDXR64 and ZmDXR88) showed frame-shifting insertions and therefore were not further analyzed. The third group is represented by ZmDXR33 (deposited in GenBank accession no. AJ297566), a 1,678-bp cDNA clone with an open reading frame of 1,419 bp, a 5'-untranslated region of 113 bp, and a 3'-untranslated region of 126 bp. It encodes a 473-amino acid protein with a calculated molecular mass of 51.2 kD and a theoretical pI of 6.7. BLAST analysis of the clone against GenBank revealed highest similarities to other published DXR sequences from plants, e.g. 91% identity to the DXR from rice (GenBank accession no. AF367205), 88% identity to the barley DXR (GenBank accession no. AJ583446), recently identified in our laboratory, or 74% identity to the peppermint DXR (GenBank accession no. AF116825). As the MEP pathway is plastid-located in plants, the sequence was subjected to software analysis for target signal prediction. The deduced ZmDXR protein is predicted to contain a signal sequence for plastid import, with the most probable cleavage site between residues C48 and C49. Interestingly, C49 belongs to a highly conserved CS-X motif (X: A, V, or M; Carretero-Paulet et al., 2002
The assignment of the cloned cDNA as DXR was originally based solely on the high degree of sequence identity to published plant DXR sequences. Therefore, a DNA fragment of ZmDXR33 containing only the predicted mature part of the protein was cloned in frame behind a 6x-His tag into pQE30. The recombinant protein was partially purified by metal affinity chromatography. After elution from the Talon column, fractions were checked by SDS-PAGE and western-blot analysis using a monoclonal anti-His-Tag antibody for the presence of recombinant protein. Those fractions containing recombinant 6x-His-ZmDXR were used for enzyme assays with NADPH and enzymatically generated DXP as substrate. The conversion of NADPH to NADP was measured by an absorption decrease at 340 nm. Initial rates were used for calculation of specific enzyme activities (Table I). The oxidation of NADPH was specific for the DXR reaction, as shown by assays omitting the substrate or adding 1 µM fosmidomycin, a specific inhibitor of DXR activity (Kuzuyama et al., 1998a
For antibody production, the recombinant 6x-His-ZmDXR was purified from inclusion bodies after overnight induction with isopropyl
The full-length sequence of ZmDXR33 was used as a probe in a northern-blot analysis with RNA from different maize tissues. The probe recognized a single band at about 1.8 kb. DXR exhibits differential transcript accumulation upon mycorrhization, with an approximately 2-fold increase of DXR mRNA for two different AM fungi compared with nonmycorrhizal roots (Fig. 2). The rate of root colonization was slightly higher for Glomus intraradices (approximately 80%) as compared with Glomus mosseae (approximately 60%), in accordance with a slightly stronger signal in the blot analysis in the first sample. A similar correlation of colonization intensity, including arbuscule frequency as well as metabolite accumulation and transcript abundance of DXR, has been observed in other experiments (not shown) and in earlier investigations with a heterologous DXR probe on wheat (Triticum aestivum) samples (Walter et al., 2000
For roots and leaves of maize cv Garant, the results obtained by RNA-blot analysis could be verified on the protein level. Due to its faster and more consistent root colonization, only G. intraradices was used in this and the subsequent experiments. Mycorrhizal roots contain significantly higher amounts of DXR protein than nonmycorrhizal samples (Fig. 3). The level of DXR protein in leaves is similar to that in mycorrhizal roots. However, the antibody detects a faint band with a slightly higher molecular mass matching the calculated value for the preprotein (51.2 kD), which may represent the DXR before plastid import and signal peptidase processing.
To study the accumulation of DXR on a cell-specific and subcellular level, we used affinity-purified anti-6x-His-ZmDXR antibodies in immunolocalization studies with maize root sections. Figure 4 shows the localization of DXR in maize root cortex cells. In nonmycorrhizal roots, signals for DXR can be found in plastid aggregations in the area around the nucleus and in single distinct plastids located in the cytoplasm close to the cell wall (Fig. 4A). If a cell is colonized by an arbuscule, the abundance and intensity of signals for the DXR protein is markedly increased compared with noncolonized cells. DXR-containing plastids are tightly associated with fungal structures (Fig. 4B). Plastid morphology is also altered: The formation of so-called stromules (stromafilled tubules; Köhler et al., 1997
Arbuscular development is characterized by extensive ramification of fungal hyphae to the tree-like functional structure and the eventual collapse of the fine branches during the decay. To visualize possible alterations in DXR localization during arbuscule development, changes in abundance and morphology of DXR-containing plastids were analyzed in dependence of different developmental stages of arbuscules. For easier interpretation, individual stainings by WGA-TRITC (fungal cell wall), anti-6x-His-ZmDXR/Alexa488 (DXR protein), and DAPI (plant and fungal DNA) are shown separately and as an overlay (Fig. 5). The early stages of the arbuscular cycle exhibit few, relatively thick, unbranched hyphae (Fig. 5, A and B). Here, DXR-containing plastids are not yet interconnected and are mostly distributed in the distal areas of the growing arbuscule. In the following developmental stage, arbuscules exhibit a more intense branching of the distal hyphae (Fig. 5C). This is accompanied by the formation of the plastidial network by interconnecting stromules around these arbuscules. The highest density of this network is reached at stages of mature and presumably highly active arbuscules that fill almost completely the cellular space (Fig. 5D). The beginning degeneration of the fungal structure is characterized by collapsing distal hyphae, concomitant with a condensation of the signals for DXR around the arbuscules (Fig. 5E). In this stage, the highest labeling intensity for DXR can be observed. In the latest stage of the arbuscule life cycle, the distal branches have nearly completely collapsed and no signal for DXR-containing plastids can be observed (Fig. 5F). Overall, arbuscule development in a root cortex cell is accompanied by a strong increase in plastid and DXR protein abundance. Furthermore, the formation and degeneration of the plastidial network is tightly associated with the arbuscular life cycle.
The Genes Encoding the Early Steps of the MEP Pathway Are Organized and Regulated Differently
As part of our ongoing work on the regulation of MEP pathway enzymes and genes during mycorrhization, we have now analyzed the DXR as the second reaction but the first committed step of the pathway. Excluding two cDNAs with incomplete open reading frames probably originating from pseudogenes or splicing errors, only a single type of DXR cDNA (ZmDXR33) was found in maize. A search in the available EST collections of maize from various tissues (about 360,000 sequences in ZmDB as of October 2003, Dong et al., 2003
In contrast, our recent work on DXS regulation has identified two distantly related genes and transcripts for this transketolase-like enzyme displaying differential and largely complementary expression patterns (Walter et al., 2002
As it catalyzes the first committed reaction, DXR is a potential regulatory step in the MEP pathway. However, the possible role of DXR as a flux-controlling step has been addressed in only a few experimental systems. In mycorrhizal roots, a concomitant induction of DXS and DXR by AM fungal colonization has been shown previously at the transcript level for several cereals using heterologous probes (Walter et al., 2000
In Arabidopsis, there is a direct light regulation and a developmental modulation of DXR, as shown by RNA-blot analysis and promoter::
Total organ analyses such as RNA blots or immunoblots underestimate the extent of transcript or protein accumulation in physiological situations that are limited to few single cells like colonization by arbuscular mycorrhizal fungi. Therefore, histological methods are required to obtain more detailed results about abundance and distribution of transcripts and/or proteins on a cellular or subcellular level. For this reason, we used DXR antibodies to localize the protein in sections of maize roots. In nonmycorrhizal roots and in noncolonized cells of mycorrhizal roots, only a few DXR-containing plastids could be found that were anisotropically distributed or were located adjacent to the cell nucleus (Fig. 4). These results are in agreement with the findings of Fester et al. (2001
Upon mycorrhization, abundance and distribution of DXR-labeled plastids change significantly in maize root cortex cells. With the beginning colonization of the cell, plastids start to multiply and to aggregate until, finally, a dense network around the arbuscule is formed (Fig. 5). Similar arbuscule-located networks were observed by Fester et al. (2001
Arbuscule development reportedly occurs in a time span of 7 to 10 d in cereals (Alexander et al., 1988
In the apocarotenoid biosynthetic pathway, we have now characterized the MEP pathway genes DXS2 (Walter et al., 2002
The temporal and spatial correlation of DXR accumulation with proteins having a defined role in arbuscule function (MtPT4 and H+-ATPase) is in agreement with a postulated but as yet unknown role of DXR and (apo) carotenoids in arbuscule physiology. It is still an open question whether carotenoids or their apocarotenoid cleavage products are the functional molecules. A functional significance for the accumulating end products seems rather unlikely because they are found in osmiophilic droplets in the cytoplasm or in the vacuole of cells harboring degenerating or collapsed arbuscules (Fester et al., 2002a
Carotenoids are potent general antioxidants and they might play a role in the detoxification of reactive oxygen species generated during the life cycle of arbuscules (Salzer et al., 1999
Plant Cultivation and Fungal Inoculation
Maize (Zea mays cv Garant) was grown in expanded clay (Lecaton, 25 µm particle size; Fibo Exclay, Pinneberg, Germany) in 250-mL plastic pots under a 16-h light/8-h dark regime in a phytochamber. Fertilization was done once per week using Long Ashton solution with 10% of the original phosphate content. Fungal inocula of Glomus intraradices Schenk and Smith (isolate 49; provided by Henning von Alten (Institut für Pflanzenkrankheiten und Pflanzenschutz, Universität Hannover, Hannover, Germany) or of Glomus mosseae (Nicolson and Gerdemann) Gerd. and Trappe (obtained from Biorize, Dijon, France) consisted of propagules in expanded clay that were enriched by previous cocultivation with leek (Allium porrum) plants. Mycorrhization was achieved by cocultivation of plants with the inoculum mixed with sterile expanded clay (1:4, v/v) for at least 4 weeks. Rates of colonization were estimated after staining roots with trypan blue according to standard procedures as described by Maier et al. (1995
A cDNA library prepared from mycorrhizal maize roots (cv dwarf1 colonized by G. intraradices) in the
Sequence analysis was performed using the DNAstar LaserGene (DNAstar, Madison, WI) and BioEdit (Hall, 1999
The coding part of the ZmDXR33 cDNA excluding the predicted plastidtransit peptide was amplified using the primers KpnDXR (5'-CAGGTACCCAACAGGCTCCACC-3') and PstDXR (5'-CACTGCAGTTATGCAGGGACAGG-3') to create a KpnI-site at the 5' end and a PstI-site at the 3' end. The resulting amplicon was subcloned into pGEM T Easy (Promega, Madison, WI) and was subsequently cloned in-frame behind an N-terminal 6x-His-tag into the KpnI/PstI-sites of pQE30 (Qiagen, Hilden, Germany), thus creating pQEdxr. Heterologous expression was carried out in the Escherichia coli M15 pREP4 strain (Qiagen). For overexpression, 800 mL of M15 pREP4 pQEdxr were induced with 1 mM IPTG at 37°C overnight. After harvest, bacterial cell pellets were resuspended in 100 mM Tris HCl, pH 7.5, 300 mM NaCl, and 1 mM
For functional heterologous expression of ZmDXR33, 2.4 L of culture of E. coli M15 pREP4 pQEdxr cells were induced with 0.2 mM IPTG for 6 h at 30°C. After harvest, cells were resuspended on ice in 100 mM Tris HCl, pH 7.5, 300 mM NaCl, 2.5 mM imidazol, 1 mM
RNA from maize tissues was isolated using a guanidinium thiocyanate-based method. Briefly, ground tissue was suspended in extraction buffer (4 M guanidinium thiocyanate, 20 mM EDTA, 20 mM MES, 0.5% [w/v] N-lauryl sarcosine, 5% [w/v] polyvinylpolypyrrolidone, and 1% [v/v]
Total protein was extracted from maize tissues by a phenol-based method (Meyer et al., 1988
Substrate for DXR reactions (DXP) was synthesized according to Miller et al. (2000
Freshly harvested roots of 4- to 6-week-old maize plants were immediately fixed in 3% (w/v) paraformaldehyde/0.1% (v/v) Triton X-100 in phosphate-buffered saline (PBS; 135 mM NaCl, 3 mM KCl, 1.5 mM KH2PO4, and 8 mM Na2HPO4, pH 7.1). After vacuum infiltration, fixation was performed for 2 h at room temperature. After dehydration of the samples in a graded series of ethanol, the material was embedded in polyethylene glycol (PEG; mixture of PEG 1500 and PEG 4000, 2:1, v/v) and was cut as described by Hause et al. (2002
We thank Takuji Sasaki (MAAF DNA Bank) for the rice EST clone S11168 and Wolfgang Zimmer (Garmisch-Partenkirchen) for E. coli TG1 pQEdxs and TG1 pQEdxr. Fosmidomycin was a kind gift of Wilhelm Boland (Jena, Germany). We also thank Kerstin Manke for excellent technical assistance. Received August 26, 2003; returned for revision October 23, 2003; accepted November 4, 2003.
Article, publication date, and citation information can be found at www.plantphysiol.org/cgi/doi/10.1104/pp.103.032342.
1 This work was supported by the Deutsche Forschungsgemeinschaft within the priority program (Schwerpunktprogramm) 1084 Molecular Basics of Mycorrhizal Symbioses (grant nos. Wa536/31 and Wa536/32 to M.H.W.). * Corresponding author; e-mail mhwalter{at}ipb-halle.de; fax 49-345-5582-1009.
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