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First published online June 1, 2004; 10.1104/pp.104.040469 Plant Physiology 135:891-906 (2004) © 2004 American Society of Plant Biologists A Mutant of Arabidopsis Lacking the Triose-Phosphate/Phosphate Translocator Reveals Metabolic Regulation of Starch Breakdown in the Light1,[w]Department of Plant Sciences, University of Oxford, Oxford OX1 3RB, United Kingdom (R.G.W., D.G.I., N.J.K.); and Robert Hill Institute, Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield S10 2TN, United Kingdom (P.H.)
The chloroplast envelope triose-phosphate/phosphate translocator (TPT) is responsible for carbohydrate export during photosynthesis. Using measurements of carbohydrates, partitioning of assimilated 14CO2, photosynthetic gas exchange, and chlorophyll fluorescence, we show that a mutant of Arabidopsis lacking the TPT increases synthesis of starch compared to the wild type, thereby compensating for a deficiency in its ability to export triose-phosphate from the chloroplast. However, during growth under high light, the capacity for starch synthesis becomes limiting so that the chloroplastic phosphate pool is depleted, resulting in a restriction on electron transport, a reduction in the rate of photosynthesis, and slowed plant growth. Under the same conditions but not under low light, we observe release of 14C label from starch, indicating that its synthesis and degradation occur simultaneously in the light. The induction of starch turnover in the mutant specifically under high light conditions leads us to conclude that it is regulated by one or more metabolic signals, which arise as a result of phosphate limitation of photosynthesis.
During photosynthesis, the triose-phosphate/phosphate translocator (TPT) of the chloroplast inner envelope membrane mediates the counterexchange of stromal triose-phosphates (triose-P) derived from CO2 fixation with cytosolic orthophosphate (Pi), thus providing the cytosol with the precursors for Suc synthesis. Optimum rates of photosynthesis require the regulated exchange of metabolites through TPT. If triose-P is withdrawn from the chloroplast too quickly, the Calvin cycle is depleted of intermediates. Alternatively, if transport through TPT is too slow, phosphorylated intermediates accumulate in the chloroplast, resulting in a depletion of stromal Pi, which in turn has the potential to restrict ATP synthesis, again restricting CO2 fixation (Edwards and Walker, 1983
Studies on transgenic potato (Solanum tuberosum) and tobacco (Nicotiana tabacum) plants possessing altered amounts of TPT have established the central role of this translocator in the integration of assimilate partitioning during photosynthesis (Barnes et al., 1994
Recently, an Arabidopsis mutant tpt-1 containing a T-DNA insert in the single gene encoding TPT (At5g46110) has been isolated in a reverse-genetic screen (Schneider et al., 2002
To address this issue, we have examined photosynthetic carbon partitioning in the identical mutant (ape2), which was independently isolated in a chlorophyll fluorescence-based screen designed to identify lines defective in photosynthetic acclimation (Walters et al., 2003
The ape2 Mutation Blocks Expression of the TPT
We have previously described how the ape2 mutation is due to tandem insertion of at least two T-DNA elements immediately upstream from the TPT translational start site (Walters et al., 2003
However, postamplification restriction digestion used to distinguish individual GPT and PPT genes (Fig. 1B) showed that, while there were no changes in the relative levels of PPT1 and PPT2 mRNAs, clear changes could be identified in the pattern of GPT gene expression in ape2 plants. These findings were confirmed in microarray experiments using leaves from the wild type and mutant grown under both LL and HL (Fig. 1C). Not only did the ape2 mutant show no increases in mRNAs encoding phosphate translocators, but also there was a decline in GPT2 message to below detectable levels. The significance of this change is unclear at present.
SDS-PAGE analysis of chloroplast envelope preparations confirmed that the reduced mRNA levels were reflected in decreased levels of TPT protein, and conversely that levels of other transporters were not appreciably increased. No changes in the polypeptide profile were apparent other than in a diffuse band corresponding to the TPT protein (Barnes et al., 1994
Analysis of assimilate accumulation provided strong evidence that the decreased TPT mRNA levels compromised the ability of the ape2 mutant to export triose-P from the chloroplast. Figure 2 shows the levels of hexoses, Suc, and starch extracted from the leaves of LL-grown wild-type and ape2 plants during an 8-h photoperiod. In both lines, starch and Suc, the dominant carbohydrates, increased progressively throughout the day (Fig. 2, A and B). Levels of Glc increased but then returned to predawn levels at the end of the day (Fig. 2C). By contrast, there were no clear changes during the day in the amount of Fru in wild-type plants, although this minor component accumulated progressively in the mutant (Fig. 2D). Crucially, however, Suc levels in the leaves of the ape2 mutant were markedly lower than those of the wild type throughout the day, despite being identical at the start of the photoperiod (Fig. 2B), while starch accumulated up to 50% faster in the mutant than in the wild type (Fig. 2A). Moreover, hexose levels were significantly lower in the mutant (Fig. 2, C and D), as would be expected if they were produced primarily as a consequence of Suc cycling.
These changes are similar to those observed previously for antisense tobacco and potato plants with reduced levels of TPT (Barnes et al., 1994 To further explore the fate of recently assimilated CO2, we carried out experiments in which intact plants were supplied with 14CO2 during photosynthesis under normal growth conditions. Wild-type and mutant plants were labeled in the growth chamber, being placed side by side in a sealed glass tank within which 14CO2 was released, thus ensuring that the two sets of plants were exposed to identical conditions during labeling. The quantity of supplementary 14CO2 was sufficient to ensure that the plants did not exhaust the CO2 within the chamber during each 15-min labeling period, but was not so high that photorespiration was completely suppressed, thereby minimizing the effects of high CO2 levels on 14C labeling patterns. The radioactivity recovered by flushing the chamber through KOH traps and extracting plant metabolites indicates that the [CO2] in the chamber was in the range 250 to 350 µL L1 by the end of the labeling period. Table I shows that, under these experimental conditions, a TPT deficiency significantly altered photoassimilate partitioning under both LL and HL growth conditions. The proportion of 14CO2 converted into Suc was lower in the ape2 mutant than in the wild type under both LL and HL. Nevertheless, despite the TPT deficiency, the ape2 mutant was able to export an appreciable proportion of assimilated carbon to the cytosol to make Suc. The reduced incorporation into Suc was accompanied by a parallel decrease in the proportion of 14C in the minor soluble sugars Glc and Fru, while the proportion of label entering organic acids and phosphate esters was unaffected by the ape2 mutation.
In LL, the reduced incorporation into soluble sugars was reflected in an increase in the labeling of starch, consistent with measurements of carbohydrate content (Fig. 2) and data for tpt-1 plants labeled using saturating concentrations of 14CO2 (Schneider et al., 2002
Accumulation of label in specific metabolites is influenced not only by the rate of labeling but also by the size of different metabolite pools and their rate of turnover. To further investigate how a TPT deficiency alters the fate of assimilated 14CO2, pulse-chase experiments were carried out in which plants were harvested immediately following a period of 14CO2 assimilation or were allowed to continue photosynthesis in the growth cabinet for a further 2 or 4 h before extraction and fractionation. Recovery of unincorporated label showed that in these experiments, there were higher overall CO2 concentrations during the pulse, with the final [CO2] being in the range 490 to 570 µL L1 (we presume the lower assimilation to be due to the lower number of plants in the chamber). Nevertheless, the initial patterns of labeling were consistent with the previous experiments, with only minor changes in the proportional labeling of amino and organic acids, which could be accounted for by reduced rates of photorespiration. Once again, the proportion of label found in Suc was lower in the mutant with a compensating increase in proportional labeling of starch not only under LL conditions but also in HL, which can again be attributed to the elevated levels of CO2 during labeling. By expressing the recovered counts relative to rosette size, it was possible to determine quantitatively the fate of CO2 fixed during the pulse during normal photosynthesis in air over the following 4 h. Figure 3 shows the results of this analysis after correction for differences in the overall specific activity of the CO2 in the chamber (to avoid depletion of CO2 during the pulse, the quantity of 14CO2 supplied to wild-type plants under HL conditions was larger than for the other three sets of plants). It is immediately apparent that HL wild-type plants had a markedly higher CO2 fixation rate than the corresponding ape2 plants (approximately 24 µmol m2 s1 compared to 9 µmol m2 s1), whereas the two sets of LL plants had similar CO2 fixation rates (6 µmol m2 s1). These values correspond very closely to the measured rates of CO2-saturated oxygen evolution at the relevant actinic irradiance (Fig. 4A).
Irrespective of the initial extent of labeling during the pulse, four metabolite pools consistently showed a progressive decrease in labeling during the chase: Suc, amino acids, phosphate esters, and to a lesser extent organic acids. The rapid removal of label from these pools suggests that each is turning over rapidly, consistent with their roles as metabolic intermediates, biosynthetic precursors, and translocated substrates for metabolism in sink tissues. Conversely, labeling of protein and cell wall fractions increased during the chase, as would be expected for biosynthetic end products. The patterns for the remaining metabolite pools were less consistent, in each case showing a somewhat different labeling pattern in the HL ape2 plants. Glc and Fru exhibited an initial increase in label during the chase, which was consistent with these compounds being derived secondarily from the hydrolysis of Suc. In most plants there was a subsequent decrease in labeling of hexoses, particularly Fru, but in HL ape2 plants the extent of hexose labeling was maintained. An even more dramatic difference during the chase, however, was in the labeling of starch. In LL-grown plants, labeling of starch increased, reflecting the gradual chasing of label into biosynthetic end products; this pattern was even clearer in HL-grown wild-type plants. However, HL ape2 plants showed instead a clear decline in labeling of starch during the chase.
Figure 4 shows the results of measurements of photosynthetic gas exchange carried out on wild-type and ape2 plants grown under LL or HL conditions. Under limiting light, the mutation had no perceptible effect on photosynthesis (Fig. 4, A and B), but as the light level was increased to the point where factors other than light become limiting, differences between the wild type and mutant became apparent, there being a significant reduction in the maximum CO2 assimilation rate in air (350 µL L1 CO2) for both LL-grown (P < 0.05) and HL-grown (P < 0.01) plants (Fig. 4B). This difference was even more noticeable under nonphotorespiratory conditions, the ape2 mutant having light-saturated rates of photosynthesis that were greatly reduced in comparison to the wild type (Fig. 4A). This relative insensitivity of the ape2 mutant to elevated CO2 is emphasized by the A-Ci curves for HL-grown plants (Fig. 4C). Wild-type plants exhibited the anticipated rise in CO2 assimilation rate (A) as the intercellular CO2 concentration (Ci) increased, with an approximately linear region at low Ci (where the limiting factors were the level of activated Rubisco and the availability of CO2 itself) and a hyperbolic region at higher Ci (where CO2 fixation was instead dependent on the rate of regeneration of ribulose-1,5-bisphosphate, or RuBP). As would be expected, under high [CO2] conditions, the rate of CO2 consumption corresponded closely to the maximum rate of O2 evolution (Fig. 4A). In contrast to the wild type, the ape2 mutant exhibited a highly atypical A-Ci relationshipalthough there was the expected initial linear A-Ci response, at higher Ci (180 µL L1 or above) there was no further increase in assimilation rate. Since Ci is higher than this at growth irradiance (Fig. 4D), this strongly implies that ape2 plants suffer a limitation on RuBP regeneration, even under ambient conditions, and that this is the basis for the observed reduction in the rate of photosynthesis (Fig. 4B). The inability of HL ape2 to increase assimilation rates in response to elevated CO2 also accounts for the reduced amount of 14C labeling during the feeding experiments compared to HL wild-type plants (Fig. 3). Although the TPT defect restricted the maximum rate of photosynthesis in both LL- and HL-grown plants, photosynthesis under growth conditions was only affected in HL. At light levels corresponding to the plants' growth conditions, there was no difference in photosynthesis at LL, but the photosynthetic rate of HL-grown ape2 plants was clearly lower than that of the corresponding wild-type plants (Fig. 4B). Figure 5 shows that although there was no perceptible effect of a TPT defect on growth under LL, under HL conditions the ape2 mutation had adverse consequences for plant growth. There were decreases in rosette diameter (Fig. 5A), total leaf area, and fresh weight from early in development onward. Even in plants at similar developmental stages, the rate of rosette expansion was appreciably slower in ape2 plants (Fig. 5B), indicating that the reduced size at any given stage of growth of ape2 plants was not simply due to retarded seedling development. It was also notable that the onset of flowering occurred approximately a week later in the mutant, for both LL and HL growth (data not shown).
Analysis of Electron Transport
The ape2 mutant was selected on the basis of a strong chlorophyll fluorescence phenotype (Walters et al., 2003
To complement these data, measurements of chlorophyll fluorescence and PSI redox state (via measurements of 830-nm absorption changes) were made in parallel with the photosynthesis measurements (Fig. 4). Under these conditions, a difference in PSII redox state was again observed in HL-grown plants at light levels corresponding to growth conditions (Fig. 6C), which was accompanied by a change in the PSI primary electron donor (P700) to a more oxidized state in ape2 plants than in the wild type (Fig. 6E). No PSI redox changes were observed for LL-grown ape2 plants (data not shown).
Taken together, the redox changes on the PSII acceptor side and the PSI donor side represent a marked increase in the intersystem electron gradient in the mutant, despite the reduction in the rate of linear electron transport whether measured via CO2 assimilation (Fig. 4B) or calculated from data for
To assess stromal redox state in situ, the activation state of chloroplast NADP-dependent malate dehydrogenase (NADP-MDH) was determined in extracts of leaves frozen immediately after removal from growth conditions. Table II shows these data, demonstrating that the activation state of NADP-MDH was identical for wild-type and ape2 plants under LL growth and also for HL-grown wild-type plants, but that a significant increase in NADP-MDH activation was observed in HL-grown ape2 plants. Since NADP-MDH activation depends on electron donation from thioredoxins and on a high NADPH to NADP+ ratio (Scheibe and Stitt, 1988
It has previously been reported in transgenic lines with reduced TPT that there are changes in the activities of enzymes involved in both the synthesis and breakdown of starch (Heineke et al., 1994
Since the ape2 line used in this study (Walters et al., 2003
Although in this study the levels and rates of accumulation of carbohydrates in the ape2 line are greater than those reported previously for tpt-1 (Schneider et al., 2002
Perhaps the clearest consequence of a TPT defect is a marked reduction (approximately 50%) in the light- and CO2-saturated rate of photosynthesis, as was the case for potato and tobacco as well as Arabidopsis tpt-1 plants (Hattenbach et al., 1997
Several other aspects of ape2 behavior under light-saturating conditions were consistent with a phosphate limitation arising from accumulation of triose-P. First, an increase in the trans-thylakoid
The reduction in maximum photosynthetic rate was not limited to CO2-saturated conditions. Even at ambient CO2 concentrations, there were clear reductions in photosynthetic capacity as a result of the ape2 mutation. This is a further contrast with the findings of Schneider et al. (2002)
LL-grown ape2 plants displayed a marked increase in partitioning of photosynthate into starch at the expense of Suc, as shown from carbohydrate measurements during the day and by determination of the fate of 14C following a short exposure to 14CO2 (Table I; Figs. 23). The labeling patterns during the following chase indicated that there were no changes in carbohydrate metabolism other than those arising as a direct result of the altered partitioning (Fig. 3). Thus, initial labeling of Suc, amino acids, organic acids, and phosphate esters was followed by progressive decreases in 14C content during the chase, consistent with their roles as metabolic intermediates, biosynthetic precursors, and translocated substrates for metabolism in sink tissues; in parallel with this, there was an increase in labeling of Glc and Fru from a low initial level, consistent with these compounds being derived secondarily by hydrolysis of Suc, and there was an increase in label found in starch, protein, and cell wall components during the chase, reflecting their status as metabolic end products.
These data for LL-grown ape2 plants are consistent with the previous findings for antisense lines of potato and tobacco as well as the tpt-1 line (Barnes et al., 1994
Despite the TPT deficiency in ape2 plants, they nevertheless accumulated Suc during the day (Fig. 2) and incorporated 14C label into Suc during the pulse (Table I; Fig. 3), in each case at approximately 50% of the rate observed in the wild type. It has been suggested that this Suc derives from simultaneous starch synthesis and breakdown in the light with subsequent export from the chloroplast, probably via the usual pathway for night-time carbohydrate export (Schneider et al., 2002
Thus, although we cannot rule out a low rate of starch turnover, any such turnover cannot be sufficient to explain the observed rate of Suc synthesis. It therefore seems inevitable that the observed rate of Suc synthesis is supported by residual TPT present in the mutant and/or by other transporters with low abundance (e.g. GPT, XPT) or with low affinity for triose-P (PPT). The higher triose-P and 3-phosphoglycerate (3PGA) levels in the chloroplast (Schneider et al., 2002
In the initial feeding experiments where CO2 levels were comparable to atmospheric conditions, HL-grown ape2 plants had lower overall rates of photosynthesis, and the proportion of 14C incorporated into starch was unchanged compared to the wild type (Table I). Thus, in contrast to the situation under LL, there was no increase in the net incorporation of 14C into starch in the HL ape2 plants compared to the wild type. However, it is important to consider the possibility that a significant proportion of starch synthesis may be masked by appreciable turnover, affecting the net accumulation of labeled starch. Based on relative rates of photosynthesis (Fig. 4) and the proportions of label found associated with Suc (Table I), we estimate that the rate of Suc synthesis in HL ape2 plants was 6-fold greater than in LL ape2 plants. Since triose-P export is presumably already approaching saturation in LL ape2, we conclude that some or all of the additional labeling of Suc in HL ape2 results from starch turnover (see below). Further information about the rate of starch synthesis in HL ape2 plants comes from the pulse-chase experiments, in which label was determined relative to leaf area to give a measure of absolute rates of synthesis. Immediately following the pulse, there was a marked decrease in starch labeling in the mutant compared to the wild type, which could barely be accounted for by starch turnover as reflected in the rate of Suc labeling (see above). Thus, we again found no evidence for appreciable stimulation of starch synthesis relative to the wild type.
Apart from triose-P export via the TPT, starch synthesis is the dominant pathway by which a chloroplast's supply of inorganic phosphate can be readily replenished. Its importance in this regard has been shown using both Arabidopsis tpt-1/adg1 double mutants and antisense potato plants with reduced TPT and AGPase levels (Hattenbach et al., 1997
The precise nature of such a limitation in HL ape2 plants cannot be unambiguously determined from our data. The rate of starch synthesis failed to increase despite a presumed increase in the availability of hexose phosphates and an increase in the stromal ratio of 3PGA to Pi (Schneider et al., 2002 Although during the pulse-chase experiments wild-type plants assimilated markedly more 14CO2 under HL than did ape2 mutants (Fig. 3), as a direct result of its higher rate of CO2 assimilation under the CO2-enriched conditions used for 14CO2 feeding (Fig. 4A), the subsequent 4-h chase was carried out at atmospheric CO2 concentrations. The subsequent labeling patterns during the chase can therefore be taken to accurately reflect the pattern of carbon metabolism in ambient conditions. Indeed, the overall labeling pattern in HL wild type was qualitatively similar to that observed for both sets of LL plants, the only minor exception being the slow release of label from the organic acid pool (also observed in HL ape2 plants), which perhaps reflects a larger organic acid pool size in HL-grown plants. Once the difference in the initial extent of labeling is accounted for, other marked differences between wild type and mutant are made clear, several of which are distinct from those seen during LL growth. Most significant was the clear reduction in 14C label found in starch in the ape2 mutant, which occurred during the chase. Whereas wild-type plants accumulated further label, the additional 14C being derived from that initially incorporated into Suc and amino acids (and also organic acids and phosphate esters), ape2 plants showed a 30% decline in starch labeling within 2 h (Fig. 3), providing for the first time, to our knowledge, direct evidence that in TPT-deficient plants, newly synthesized starch may be broken down at the same time as ongoing starch synthesis. Further evidence for starch breakdown in the light and an indication of the likely fate of the released label comes from the 14C-labeling pattern of Suc (Fig. 3). In LL plants and HL-grown wild type, significant initial labeling of Suc was dramatically reduced 2 h later by 75% to 85%, probably reflecting Suc export to nonaerial tissues and/or reintroduction into metabolism via hydrolysis to Glc and Fru followed by phosphorylation by hexokinases; meanwhile, labeling of hexoses peaked after 2-h chase and then declined in the following 2 h, consistent with hexoses being derived from Suc breakdown and then re-entering metabolism after phosphorylation by hexokinases. However, HL ape2 plants maintained labeling of Suc over a much longer time periodafter 2 h, 14C in Suc was still over 65% of the initial level (50% after 4 h)and labeling of hexoses was also extended over a longer period with no chasing out of label after 4 h. Thus, the continued availability of labeled Suc in turn contributed to sustained levels of labeled hexoses, adding to those produced during export of label from chloroplasts following starch breakdown.
Both observations reinforce the hypothesis that there is breakdown of newly synthesized starch in the light, providing a continued supply of labeled substrates for Suc synthesis. Estimates of the rates of such breakdown indicate that this is not a minor pathway but accounts for a significant proportion of fixed carbon. Even when making the most conservative assumptions, for instance ignoring turnover of unlabeled starch synthesized before or after the pulse of 14CO2, we calculate that the minimum rate of starch breakdown in the light is one-quarter of that which occurs at night. More realistic assumptions suggest that the rates of breakdown in the light and at night are comparable. A simple illustration of this is that, assuming our labeling experiment reflects the behavior of starch synthesized throughout the day (see Schneider et al., 2002
Although we cannot formally exclude the possibility that the turnover of insoluble glucan observed in this study represents the metabolism of soluble pre-amylopectin or phytoglycogen-like precursors prior to incorporation into starch granules, this seems unlikely. Recent pulse-labeling studies of starch indicate that after 10 min the size distribution of labeled glucan chains matches that of the glucan chains of amylopectin within the native starch granule, and it has been estimated that during the day it takes about 1 min to form each 9-nm lamella of a starch granule (Nielsen et al., 2002 It is probable that the processes involved in the observed starch turnover during the day are the same as those responsible for starch breakdown at night. In microarray experiments using RNA from leaves taken at mid-morning (i.e. the same time of day as the 14CO2-feeding experiments), genes involved in starch degradation and subsequent carbohydrate export exhibited no changes in the mRNA levels that correlated with the occurrence of starch turnover (Fig. 7). Although we cannot exclude the possibility that there are changes in mRNA abundance at other times of daysome genes have diurnal patterns of expression with transcription occurring principally during the latter part of the daysuch changes are unlikely to be relevant to the observed mid-morning turnover of 14C starch. Thus, there is no evidence for the expression of additional pathways for starch degradation in this study.
Our analysis of the starch metabolism transcriptome shows that the same changes are seen in ape2 plants whether grown under HL or LL (Fig. 7). The observed changes in gene expression are intriguing in that, despite an increased requirement for starch synthesis in ape2 plants, there is a decrease in levels of mRNAs whose protein products are required for starch synthesis and degradation. This is likely to be a response brought about by the reduced levels of Suc and hexoses in the mutant (Fig. 2). Wild-type plant would normally respond to such decreased sugar levels by altering partitioning of photosynthate away from starch and toward Suc. However, since reduced levels of starch synthase have no impact on starch synthesis in LL ape2 plants, it seems unlikely that the transcriptional regulation highlighted by the mutant in Figure 7 plays a direct role in controlling carbohydrate partitioning in wild-type plants. It is more likely that regulation of partitioning in response to low sugar levels occurs by well-established posttranscriptional mechanisms, including allosteric and covalent regulation of AGPase. In this context, the apparent limitation on starch synthesis in HL ape2 plants appears to be an inadvertent consequence of an increased requirement for starch synthesis in the presence of a signal indicating a supposedly reduced requirement.
The induction of starch turnover in HL ape2 plants is not simply a result of changes in mRNA abundance, since the same pattern of gene expression is observed in LL ape2 plants, which do not exhibit starch turnover in the light. Furthermore, the TPT deficiency in ape2 plants and its direct consequences on carbon metabolism within the chloroplast do not themselves provide signals sufficient to trigger starch turnover. A similar argument can be made for other aspects of metabolism outside the chloroplast. In particular, although reduced Suc levels provide signals repressing AGPase activity and starch synthesis in Arabidopsis leaves (Hendriks et al., 2003
An obvious possibility is that there is a link between starch turnover in HL ape2 plants and the finding that photosynthesis is phosphate-limited. Analysis of photosynthesis in these plants has revealed several potential signals that might activate starch turnover and that are observed or implied specifically in HL ape2 plants. These include metabolic signals from lowered phosphate levels and a reduced ATP to ADP ratio, and redox signals from plastoquinone, NADP, and thioredoxins. All these signals have been shown to have regulatory roles within the chloroplast (Wedel and Soll, 1998
Light-dependent redox signals (probably including thioredoxins) have been shown to regulate AGPase in combination with Suc (Hendriks et al., 2003
The importance of starch as a store of carbohydrate, which is released overnight, is demonstrated by the poor growth of mutants deficient in its synthesis or degradation (Caspar et al., 1991
Plant Material and Growth Conditions
Arabidopsis L. (Heynh.) cv Wassilewskija (Ws-2, N1601) and the ape2 mutant derived from it (Walters et al., 2003
Unshaded mature leaves were excised from intact plants under growth conditions 2 h into the photoperiod and were immediately frozen in liquid nitrogen and stored at 80°C until use. For RT-PCR, total RNA was extracted using the RNeasy protocol (Qiagen, Venlo, The Netherlands), and 1 µg was annealed to 10 µM oligo(dT) in 15 µL of total volume (10 min at 70°C, 5 min on ice). cDNA was then synthesized using MMLV-RT (Promega, Madison WI) in the presence of 40 units RNasin (Promega). RT-PCR (using cDNA usually corresponding to 120 pg of total RNA per 50-µL reaction) was carried out with cycle parameters empirically determined for each primer pair to give a reproducibly linear relationship between message abundance and product yield over a 10-fold range. Primer pairs spanned one or more introns, allowing confirmation that only cDNA was amplified: TPT, 5'-TGATACCAGTCGCAGTCTGT-3', 5'-CTCTCCAAGGTATTGGTAGC-3'; GPT, 5'-TGATGATGCTT(A/G)TCTCTTGG-3', 5'-TAGTAGTTCAT(C/T)CCGCTCAC-3'; PPT, 5'-CAACAT(C/T)T(A/T)CAA(C/T)AAACAGG-3', 5'-TC(G/T)CCAATATCAT(G/A)TACGA-3'; Act4, 5'-GTCATCTTCTCACGGTTAGC-3', 5'-GGACGGTGAAGACATTCAAC-3'. Microarray experiments using the Arabidopsis full-genome GeneChip (ATH1-121501; Affymetrix, Santa Clara, CA) were carried out by the Nottingham Arabidopsis Stock Centre Transcriptomics Service (Craigon et al., 2004
Chloroplast envelope membranes were isolated essentially according to Barnes et al. (1994)
Leaf discs (1 cm2, approximately 20 mg fresh weight) were cut from LL-grown plants at 2-h intervals throughout an 8-h photoperiod and immediately frozen in liquid N2. Subsequently, they were extracted successively for 10 min in 1 mL of 80% (v/v) ethanol, 1 mL of 50% (v/v) ethanol, 1 mL of 20% (v/v) ethanol, 1 mL of water, and finally 1 mL of 80% (v/v) ethanol. The extracts were combined, dried down under vacuum, and redissolved in 0.5 mL of water. Glc and Fru in the ethanol-soluble fraction were measured enzymically (Morrell and ap Rees, 1986
For assays of starch, the ethanol-insoluble material was homogenized in 200 µL of water and autoclaved at 121°C (114 kPa) for 3 h. The suspension was then adjusted to 25 mM Na-citrate (pH 4.8) and incubated with 3 units porcine pancreas
Five to 6 weeks after germination, 9 or 12 plants were placed in a sealed glass chamber (36.5 x 26.5 x 24.5 cm, total volume 23.7 dm3) and exposed to 14CO2 1 h into the photoperiod. The 14CO2 was released inside the chamber by injecting 1 mL of propionic acid into 50 µL or 100 µL of 1 M NaH14CO3 (specific activity 37 GBq mol1) contained in a vial suspended inside the chamber. Two small electric fans were used to circulate air within the chamber. After 15 min the chamber was flushed with air for 5 min (flow rate 9 dm3 min1). Plants were then removed from the chamber or (in pulse-chase experiments) incubated in the opened container for a further 2 or 4 h. Throughout the incubation plants were exposed to the irradiance under which they were grown and the temperature remained at 20°C. After harvesting, the aerial portion of each plant was immediately placed in a tube containing 20 mL of ethanol at 0°C, rapidly frozen in liquid nitrogen, and then stored at 80°C. For pulse-chase experiments, each plant was photographed at the start of the experiment to allow determination of rosette area; this was used to compare plants since it reflects the relative rate of light capture and therefore of overall photosynthesis.
Frozen aerial tissue from each plant was extracted by boiling for 10 min successively in 20 mL of 100% (v/v) ethanol, 20 mL of 20% (v/v) ethanol, 20 mL of water, and finally twice in 20 mL of 100% (v/v) ethanol. The supernatants were combined and dried by rotary evaporation under vacuum. The ethanol-soluble components were redissolved in 10 mL of 20% (v/v) aqueous ethanol.
The soluble fraction obtained following ethanol extraction was separated into acidic, basic, and neutral components by ion-exchange chromatography using Dowex 1X8-200 and Dowex 50WX8-200 (Sigma-Aldrich, Poole, Dorset, UK) as described previously (Runquist and Kruger, 1999 The ethanol-insoluble fraction was homogenized with water in a final volume of 15 mL and autoclaved at 121°C for 3 h. A 1-mL aliquot of the autoclaved insoluble fraction was digested sequentially for 16 h at 37°C with 10 units amyloglucosidase (Roche) and 2 units amylase (Merck) in 50 mM Na-acetate (pH 5.8), and then with 10 units pronase (protease XIV Streptomyces griseus; Sigma-Aldrich) in 90 mM Tris-HCl (pH 7.8). Ion-exchange chromatography, as described above, was used to separate neutral, basic, and acidic fractions corresponding to starch, protein, and cell wall components, respectively. The insoluble residue, consisting of additional cell wall material, was washed three times with 0.5 mL of water, resuspended in 0.25 mL of water, and then incubated with 0.25 mL of tissue solubilizer (Merck) at 60°C for 24 h. The amount of radioactivity in the initial insoluble fraction was determined by incubating triplicate 0.25-mL aliquots of the autoclaved homogenate with 0.25 mL of tissue solubilizer at 60°C for 24 h.
Measurements of O2 evolution in saturating CO2 from leaf discs were carried out using an LD2 leaf-disc electrode as described previously (Walters et al., 1999
Unshaded mature leaves were excised from intact plants under growth conditions and immediately frozen in liquid nitrogen and stored at 80°C until use. Pigments were extracted in ethanol/diethyl ether, dried under N2, redissolved in acetone, and analyzed by reverse-phase HPLC as described by Ruban et al. (1994)
Unshaded mature leaves were excised from intact plants under growth conditions and immediately frozen in liquid nitrogen and stored at 80°C until use. Individual frozen leaves (about 100 mg fresh weight) were ground to a fine powder using a microhomogenizer driven by an electric drill (Hearse, 1984
We thank Mrs. P. Scholes for excellent technical assistance. Received February 6, 2004; returned for revision March 11, 2004; accepted March 11, 2004.
1 This work was supported by the United Kingdom Biotechnology and Biological Sciences Research Council (grant no. P15726).
2 Present address: Department of Animal and Plant Sciences, University of Sheffield, Western Bank, Sheffield S10 2TN, UK.
[w] The online version of this article contains Web-only data. Article, publication date, and citation information can be found at www.plantphysiol.org/cgi/doi/10.1104/pp.104.040469. * Corresponding author; e-mail robin.walters{at}plants.ox.ac.uk; fax 44 (0)1865 275074.
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