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First published online May 20, 2005; 10.1104/pp.105.059774 Plant Physiology 138:701-714 (2005) © 2005 American Society of Plant Biologists Loss-of-Function Mutations of ROOT HAIR DEFECTIVE3 Suppress Root Waving, Skewing, and Epidermal Cell File Rotation in Arabidopsis1Laboratory of Genetics, University of Wisconsin, Madison, Wisconsin 53706 (C.Y.L.Y., R.M.P., K.L.C., P.H.M.); and Biological Sciences, Illinois State University, Normal, Illinois 61790 (J.C.S.)
Wild-type Arabidopsis (Arabidopsis thaliana L. Heynh.) roots growing on a tilted surface of impenetrable hard-agar media adopt a wave-like pattern and tend to skew to the right of the gravity vector (when viewed from the back of the plate through the medium). Reversible root-tip rotation often accompanies the clockwise and counterclockwise curves that form each wave. These rotations are manifested by epidermal cell file rotation (CFR) along the root. Loss-of-function alleles of ROOT HAIR DEFECTIVE3 (RHD3), a gene previously implicated in the control of vesicle trafficking between the endoplasmic reticulum and the Golgi compartments, resulted in an almost complete suppression of epidermal CFR, root skewing, and waving on hard-agar surfaces. Several other root hair defective mutants (rhd2-1, rhd4-1, and rhd6-1) did not exhibit dramatic alterations in these root growth behaviors, suggesting that a generalized defect in root hair formation is not responsible for the surface-dependent phenotypes of rhd3. However, similar alterations in root growth behavior were observed in a variety of mutants characterized by defects in cell expansion (cob-1, cob-2, eto1-1, eto2-1, erh2-1, and erh3-1). The erh2-1 and rhd3-1 mutants differed from other anisotropic cell expansion mutants, though, by an inability to respond to low doses of the microtubule-binding drug propyzamide, which normally causes enhanced left-handed CFR and right skewing. We hypothesize that RHD3 may control epidermal CFR, root skewing, and waving on hard-agar surfaces by regulating the traffic of wall- or plasma membrane-associated determinants of anisotropic cell expansion.
The primary roots of Arabidopsis (Arabidopsis thaliana L. Heynh.) seedlings display different growth behaviors depending on the conditions to which they are exposed. If grown within a homogenous environment (such as liquid or penetrable agar media), primary roots will grow downward in response to gravity (Blancaflor and Masson, 2003
While a strong correlation has been observed between CFR handedness and direction of root curving, the cause-effect relationship between them remains controversial. Even though CFR precedes root curvature (Mochizuki et al., 2005
The cellular basis for root CFR remains poorly understood. One model proposes that CFR might result from differences in anisotropic cell expansion between epidermis and more internal tissues (Furutani et al., 2000
Several observations support a role for cortical microtubules at the basal side of the CEZ in controlling CFR. First, most CFR- and root-skewing mutants have defects in microtubule organization and/or turnover dynamics. For example, the spr1/sku6, spr2, and wvd2-1 mutants, which show right-handed CFR and skew to the left on hard-agar surfaces, display left-handed cortical microtubule arrays in CEZ epidermal cells (Furutani et al., 2000
However, recent observations suggest a more complex relationship between orientation of cortical microtubules, cellulose microfibrils, and CFR. First, analysis of the temperature-sensitive mor1-1 mutant, which affects a microtubule-binding protein (Sugimoto et al., 2003
These contradictory results led Wasteneys (2004)
If the latter model is correct, one predicts the existence of mutations that affect CFR without altering organization of the cortical microtubule network in expanding cells of the CEZ. Such mutations could affect regulators of anisotropic cell expansion unrelated to the cortical microtubules. Mutations affecting the trafficking of wall biogenesis precursors or wall-remodeling enzymes, the synthesis of wall biogenesis enzymes, or the activity of factors determining wall extensibility would fall into this category. Alternatively, the inherent torsional handedness proposed in this model may be related to the helical patterns resulting from periclinal divisions of lateral root cap/epidermis initials in the root meristem (Rutherford and Masson, 1996
In this article, we report the isolation and characterization of the wave dampened6 (wvd6) mutation, which inhibits root waving, skewing, and CFR on hard-agar surfaces without altering the organization of the cortical microtubule network in cells of the CEZ. We show that mutations affecting several aspects of cell expansion regulation also inhibit CFR, root skewing, and waving on hard-agar surfaces. Tested mutants include erh3-1, which is defective in the organization of cortical microtubules (Burk et al., 2001
Identification and Phenotypic Characterization of wvd6
The wvd6 mutant was identified by screening a collection of T-DNA-mutagenized seedlings for altered root growth phenotypes on inclined agar surfaces (Sedbrook et al., 2002
The wvd6 Mutation Is Caused by a Reciprocal Translocation That Disrupts RHD3
The roots of F1 progeny resulting from crosses between wvd6 and wild-type (Ws) plants were phenotypically indistinguishable from wild type on inclined agar surfaces. Analysis of the F2 generation indicated that wvd6 is recessive and segregates as a single nuclear mutation (data not shown). Analysis of the root-waving and kanamycin-resistance (kanr) phenotypes of 89 F4 families (derived from a plant heterozygous for wvd6 in the F2 generation) showed that wvd6 cosegregated with the neomycin phosphotransferaseII (kanr) marker found on the pGKB5 T-DNA (Bouchez et al., 1993 Molecular cloning and characterization of sequences flanking the T-DNA inserts in wvd6 detected a reciprocal translocation between chromosomes 1 and 3, with one translocated chromosome harboring the tandem T-DNA insertion and the other lacking any apparent T-DNA sequences (Fig. 3A). The translocation breakpoint in the tandem T-DNA-carrying chromosome is located within the first intron of RHD3 adjacent to the T-DNA insert (Fig. 3, A and C).
To verify that other loss-of-function mutations at RHD3 also affect root growth behavior on hard-agar surfaces, we analyzed root waving, skewing, and CFR of mutant seedlings carrying the previously identified mutant alleles rhd3-1, rhd3-2, and rhd3-3 (Schiefelbein et al., 1997 V) and 8 (D N) of the gene, respectively, whereas rhd3-3 is a frameshift mutation within exon 5 and is likely a null (Wang et al., 1997
To determine whether wvd6 and rhd3 are allelic, we crossed homozygous wvd6 and rhd3-3 plants. The F1 progeny of these crosses showed root growth patterns similar to those of wvd6 and rhd3-3 single mutants (Fig. 3D). Since both wvd6 and rhd3-3 are recessive mutations, their inability to complement strongly suggests that the RHD3 disruption is the cause of the wvd6 phenotype.
Root hairs may help anchor the root to its substratum, thereby restricting root movement to its subapical region. Therefore, we tested the possibility that improper root hair development might influence root waving by analyzing the root growth patterns of several root hair defective mutants (rhd1-1, rhd2-1, rhd4-1, and rhd6) on tilted hard-agar surfaces. The roots of rhd2-1 and rhd4-1, which develop bulges at the base of their hairs (Schiefelbein and Somerville, 1990
Unlike rhd2-1, rhd4-1, and rhd6, the rhd1-1 mutant exhibits a severe root elongation defect but no alteration in root radial expansion (Fig. 4A; Table I). rhd1-1 roots are not straight, like rhd3 roots, but instead exhibit rhythmic curves that resemble root waving, albeit with greatly reduced amplitude (Fig. 6B). Unfortunately, the cell-bulging phenotype of the mutant prevents determination of CFR. Thus, the extent of similarity between rhd1-1 and wild-type root waving remains uncertain.
We also analyzed the root-waving phenotypes of several mutants defective in root anisotropic cell expansion, but not in root hair development. Under our growth conditions, root elongation is significantly reduced for cob-1, cob-2 (Hauser et al., 1995
With the exception of wvd6 (Ws ecotype) and rhd3-3 (Nossen [No-0] ecotype), all root-expansion mutants examined here were isolated in the Col background. The roots of wild-type Col seedlings typically exhibit little rightward root skewing on hard-agar surfaces under our growth conditions (Table II; Rutherford and Masson, 1996
The orientation of cortical microtubules within the root CEZ may govern CFR and the direction of cell elongation (Furutani et al., 2000
Effects of Propyzamide on Root Skewing and Cortical Microtubule Orientation
Enhanced rightward root skewing is observed when wild-type Landsberg erecta seedlings are grown on media containing 3 µM propyzamide, a
Under our conditions, 3 µM propyzamide has a similar effect on the skewing of wild-type No-0, Ws, and Col roots (Table II). This treatment also promotes dramatic increases in rightward skewing for cob-1, cob-2, and rhd1-1 roots (Table II), and minor, although statistically significant, increases in rightward skewing for eto1-1 and eto2-1 roots (Table II). On the other hand, propyzamide does not induce rightward skewing of erh2-1, rhd3-3, and wvd6 roots (Table II). We were unable to determine the skewing phenotype of erh3 under 3 µM propyzamide because mutant roots are too severely affected by this treatment (showing drastically increased radial expansion and decreased elongation) to permit accurate measurements of root skewing, even after 9 d of growth (data not shown). Severe disorganization of both cortical microtubule and cellulose microfibril alignment has been reported in the root cells of fra2 (Burk and Ye, 2002 We analyzed the effects of 3 µM propyzamide on root epidermal cell cortical microtubule orientation of 5-d-old wild-type Col, rhd3-1, cob-1, erh2-1, and eto1-1 seedlings by whole-mount immunoconfocal microscopy (Fig. 8). Microtubule orientations in the DEZ, CEZ, and mature zone of cob-1 roots grown on 3 µM propyzamide are similar to that observed in wild-type Col roots and transits from disorganized in the DEZ and transverse in the CEZ to right-handed helical in the mature zone (Fig. 8, AC and GI, respectively). By contrast, the cortical microtubule network appears relatively disorganized in the CEZ and mature zones of propyzamide-treated rhd3-1, erh2-1, and eto1-1 seedlings (Fig. 8, E and F, K and L, and N and O, respectively).
The wvd6 mutation suppresses root epidermal CFR, skewing, and waving on hard-agar surfaces and alters anisotropic cell expansion in all organs of the plant (Figs. 1 and 2; Tables I and II; data not shown). In this regard, wvd6 differs from most other root-skewing mutations characterized to date, which either enhance root skewing in the wild-type direction (sku1, sku2, sku3, sku5, lefty1, lefty2, mor1; Rutherford and Masson, 1996
wvd6 is caused by a reciprocal translocation between chromosomes 1 and 3, with one of the recombined chromosomes carrying a tandemly duplicated T-DNA near the translocation breakpoint, which is located within the first intron of RHD3 (Fig. 3). It is common for complex chromosomal rearrangements of this nature to occur following T-DNA mutagenesis (Tax and Vernon, 2001
It is unlikely that the suppressed CFR, skewing, and waving phenotypes of rhd3 roots result from the mutant's inability to form proper root hairs, since other root hair defective mutants (rhd2-1, rhd4-1, and rhd6-1) still retain the ability to wave. rhd1-1 is an exception, as its roots display waves with reduced amplitude. One possible explanation for the low-amplitude waving of rhd1-1 roots is that the mutant may retain the ability to modulate CFR, but is impaired in one or more of the growth processes responsible for the outward buckling of the subterminal region of waving roots or in the differential flank elongation that contributes to root waving (Simmons et al., 1995
Suppressed root waving on tilted hard-agar surfaces was also observed for other mutants possessing defects in cell expansion (cob-1, cob-2, eto1-1, eto2-1, erh2-1, and erh3-1), suggesting a role for controlled anisotropic cell expansion in the regulation of waving. Alternatively, the thicker roots carried by these mutants may be more resistant to the passive buckling imposed by surface-mediated impedance to root-tip mobility, a phenomenon that may contribute to waving (Migliaccio and Piconese, 2001
Among the mutants subjected to our study, erh3-1 seedlings have roots that do not skew significantly under our conditions (Table II). erh2-1 roots display a low level of skewing (2.2 ± 0.8; Table II), which is completely suppressed by propyzamide treatment (Table II). Interestingly, the difference in average root skewing for propyzamide-treated and control untreated erh2-1 roots is statistically insignificant (Table II), casting doubt on the significance of the minor skewing displayed by untreated erh2-1 seedlings. On the other hand, the cob and eto mutants exhibit a mild enhancement of rightward root skewing relative to wild-type Col (Table II). Neither of these mutants displays root CFR in the absence of propyzamide (data not shown). This observation is consistent with previous reports indicating a lack of correlation between CFR intensity and degree of skewing (Rutherford and Masson, 1996 Three-micromolar propyzamide enhances rightward root skewing and promotes left-handed CFR in wild-type Col and in eto1-1, eto2-1, cob-1, and cob-2 mutant seedlings, but has no effect on erh2-1 or erh3-1 root growth behavior (Table II). This result suggests a correlation between the ability of untreated seedlings to display root skewing on hard-agar surfaces and their propensity to respond to propyzamide by an enhancement of root skewing and a promotion of left-handed CFR.
The increased rightward skewing in the presence of 3 µM propyzamide was reported as being accompanied by a premature shift of cortical microtubules to a right-handed oblique alignment, a reduction in microtubule dynamic turnover, and increased microtubule catastrophe (Furutani et al., 2000
Both cob-1 and cob-2 are caused by the same missense mutation within the COBRA gene, which encodes a glycosylphosphatidylinositol-anchored protein necessary for cellulose biosynthesis. cob mutants are deficient in crystalline cellulose within cell walls at the root elongation zone (Schindelman et al., 2001
Propyzamide had only a minor effect on the skewing of eto1-1 and eto2-1 roots (<5°). Both eto1-1 and eto2-1 are ethylene overproducers. Whereas eto2-1 affects the structural gene for isozyme 5 of 1-aminocyclopropane-1-carboxylic acid synthase (ACS5), an enzyme involved in ethylene biosynthesis (Vogel et al., 1998
The most important observation in our study is that, unlike other cell expansion mutants, rhd3 and erh2 do not exhibit increased root skewing or CFR in the presence of propyzamide despite a dramatic propyzamide-induced disorganization of the cortical microtubules in the CEZ and mature zone. ERH2 has not been cloned. However, RHD3 encodes a putative GTP-binding protein (Wang et al., 1997
Under this model, the differential effect exerted by propyzamide on the alignment of CEZ cortical microtubules in different backgrounds (little or no effect in wild-type Col and mutant cob seedlings, and disorganization in rhd3, erh2, and eto1-1 roots; Fig. 8) would reflect different constraints exerted by mutant walls on the affected microtubular network (Fisher and Cyr, 1998 Because erh2-1 and rhd3 display similar root growth behaviors that are equally unresponsive to propyzamide treatments, it is reasonable to hypothesize that the ERH2 gene might encode a component of the RHD3 pathway. In the future, characterization of abundance and/or arrangement of plasma membrane and cell wall components in rhd3 and erh2 mutant roots relative to wild type, and molecular cloning of ERH2, may lead to a better understanding of the mechanisms regulating root CFR, waving, and skewing on hard-agar surfaces.
Plant Stocks and Manipulation
The wvd6 mutant was isolated from the Versailles collection of T-DNA insertion mutants (Bouchez et al., 1993 Upon request, all novel materials described in this publication will be made available in a timely manner for noncommercial research purposes, subject to the requisite permission from any third-party owners of all or parts of the material. Obtaining any permission will be the responsibility of the requester.
All techniques and conditions used to sterilize and germinate Arabidopsis seeds and to grow seedlings and plants were as described previously (Rutherford and Masson, 1996 To quantify root elongation and root diameter, we germinated seeds on square petri dishes containing one-half-strength Linsmaier and Skoog medium (Caisson Laboratories, Sugar City, ID) solidified with 1.5% (w/v) agar (type E; Sigma, St. Louis). The Suc content within the medium was 1.5% (w/v). The plates were sealed with paper surgical tape (Micropore; 3M, St. Paul) and kept in darkness at 4°C for 2 to 4 d. Afterward, the plates were transferred to a growth chamber at 22°C for a 16-h/8-h light/dark cycle (TC16; Conviron, Winnipeg, Manitoba, Canada) and positioned vertically. For quantification of root elongation, seedlings were photographed 5 d after germination (DAG) and again 48 h later, and total root growth was assessed over the 2-d interval. Eight-day-old seedlings were mounted on glass slides and imaged under a microscope to obtain pictures for the quantification of root diameters within their mature zones.
For assays of root waving and skewing, the plates were positioned vertically for the first 3 d of seedling growth, then inclined backward 30° and returned to the growth chamber. Seedlings were photographed 8 to 9 DAG. To quantify the mean angles of root skewing, we defined the vertical axis as 0°, and leftward or rightward deviation from the vertical as negative or positive values, respectively. The effect of propyzamide on root skewing was tested by germinating and growing wild-type and mutant seeds on media containing 3 µM propyzamide (Chem Service, West Chester, PA). To create propyzamide-containing growth medium, 6 mM propyzamide stock solutions were prepared in 100% dimethylsulfoxide (DMSO). The 0 µM propyzamide control plates also contained 0.05% DMSO. This amount of DMSO within the medium has a negligible effect on root waving and skewing (Yuen et al., 2003
Kinetics of wvd6 root gravitropism was analyzed using previously published procedures (Sedbrook et al., 1999
PCR amplification of the sequence immediately flanking the T-DNA left borders (LB) was performed via adaptor PCR (Siebert et al., 1995
To better clarify the genetic lesion in the wvd6 mutant, a wvd6 genomic DNA library was constructed by digesting wvd6 genomic DNA with EcoRI and ligating size-selected fragments (46 kb in length) into the EcoRI site of pZErO-2.1 vector DNA (Invitrogen, Carlsbad, CA). This library was screened for positive clones (Ausubel et al., 1994 To confirm that the translocation suggested by the sequence of the 3E1A insert was truly indicative of the lesion in wvd6 genomic DNA, rather than being a cloning artifact, we designed three PCR primers. Two of the primers (Chr3F, 5'-CAT TCT CTT CGT CAT TCA TCA CTC TAT CT-3', and Chr3R, 5'-GAA GAA AGA AGA ATC AAT CAC CTA CCA TC-3') flank either end of the putative chromosome 3 breakpoint of wvd6 (Fig. 3C) and would be expected to yield a 0.3-kb PCR product when wild-type plant genomic DNA is utilized as the template for amplification, and none when wvd6 genomic DNA is used. Conversely, the primer Chr1F (5'-AGG AGG AGA GGG ACG TGA GAA TGA AAG AG-3'), which is complementary to a short stretch of chromosome 1 sequence located on one end of the putative translocation breakpoint, should not generate a PCR product when used along with Chr3R on wild-type genomic DNA (Fig. 3C). This same primer pair would be expected to yield a 1.1-kb PCR product if used on a wvd6 genomic DNA template. The results of our PCR analysis were exactly as predicted (Fig. 3B), indicating that the wvd6 genome did indeed contain a translocation between chromosomes 1 and 3. To obtain a PCR fragment corresponding to the genomic DNA flanking the unresolved end of the T-DNA concatamer, reverse primers corresponding to the GUS (5'-TTG TTT GCC TCC CTG CTG CGG TTT TTC AC-3') and NPT (5'-CAA GCG ACG CCC AAC CTG CCA TCA CGA GA-3') cassettes of pGKB5 were paired with a forward primer situated 5' of the RHD3 open reading frame (5'-TTA GTA AAG GAG AAG AGG ACG GCG AGG TG-3'). Only the 5' RHD3/NPT pair yielded a PCR product (data not shown). Sequencing of this fragment revealed that a large truncation within the T-DNA had occurred, resulting in the complete loss of both the right border and GUS cassettes, and a partial loss of the OCS terminator sequence. This end of the T-DNA immediately flanks a region within the first exon of RHD3, indicating that T-DNA insertion was accompanied by a short deletion of RHD3 (Fig. 3A).
Images of seedlings on plates were obtained with a Nikon Coolpix800 digital camera, with pictures taken from the bottom of the plate (through the agar medium). Images of root CFR were acquired with a Nikon 8008S camera attached to a dissecting microscope (Wild M3Z; Leica, Wetzlar, Germany), while images for the quantification of root diameter were acquired with a SPOT RT slider digital camera (National Diagnostics, Atlanta) attached to a Nikon Optiphot-2 microscope. Quantitative analyses of images to assess angle of root skewing, root elongation rate, or root diameter were performed using the public domain National Institutes of Health (NIH) image program (v1.62; http://rsb.info.nih.gov/nih-image), with obtained data exported to Microsoft Excel spreadsheets for statistical calculations.
To analyze the organization of the cortical microtubule network in elongating and maturing cells at the tips of wild-type and mutant roots, Col, rhd3-1, cob-1, and eto-1 seeds were germinated and grown for 5 d on vertical 0.8% agar-based GM media in the presence or absence of 3 µM propyzamide (from a 3 mM propyzamide stock solution in DMSO), as described in Rutherford and Masson (1996)
We thank Herman Höfte for providing lines of the Versailles collection of T-DNA insertion mutants (Institut National de Recherche Agronomique, France), John Schiefelbein, Keith Roberts, Tim Caspar, and the ABRC (Ohio State University) for providing several of the mutants discussed in this article, and other members of the Masson laboratory for helpful discussions. We also thank the University of Wisconsin Biotechnology Sequencing Center for resolving our sequencing reactions, and the Keck Biological Imaging Laboratory at the University of Wisconsin, Madison, and the Department of Cell and Structural Biology at the University of Illinois for the use of their confocal microscopes. Received January 18, 2005; returned for revision March 11, 2005; accepted March 30, 2005.
1 This work was supported by the Fundamental Space Biology Program of the National Aeronautics and Space Administration (grant nos. NAG21189 and NAG21492 to P.H.M.), the U.S. Department of Agriculture/Hatch Funds (grant no. WIS04310to P.H.M.), the National Institutes of Health (NIH; grant no. 1 R15 GM068489 to J.C.S.), the NIH Genetics Training Grant (no. 5T32GM07133), and the NIH National Research Service Award postdoctoral fellowship (5 F32 GM06918402 to R.M.P.).
2 Present address: National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Phaholyothin Road, Klong 1, Klong Luang, Pathumthani 12120, Thailand.
3 Present address: Medical School, 4671 Medical Sciences Center, University of Wisconsin, Madison, WI 53706. Article, publication date, and citation information can be found at www.plantphysiol.org/cgi/doi/10.1104/pp.105.059774. * Corresponding author; e-mail phmasson{at}wisc.edu; fax 6082622976.
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