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First published online June 24, 2005; 10.1104/pp.105.062174 Plant Physiology 138:1637-1643 (2005) © 2005 American Society of Plant Biologists The roothairless1 Gene of Maize Encodes a Homolog of sec3, Which Is Involved in Polar Exocytosis1Department of Agronomy (T.-J.W., P.S.S.), and Center for Plant Genomics (P.S.S.), Iowa State University, Ames, Iowa 50011; Department of General Genetics, Center for Plant Molecular Biology, University of Tuebingen, 72076 Tuebingen, Germany (F.H., M.S.); and Pioneer Hi-Bred International, Johnston, Iowa 501311004 (W.B.)
The roothairless1 (rth1) mutant is impaired in root hair elongation and exhibits other growth abnormalities. Unicellular root hairs elongate via localized tip growth, a process mediated by polar exocytosis of secretory vesicles. We report here the cloning of the rth1 gene that encodes a sec3 homolog. In yeast (Saccharomyces cerevisiae) and mammals, sec3 is a subunit of the exocyst complex, which tethers exocytotic vesicles prior to their fusion. The cloning of the rth1 gene associates the homologs of exocyst subunits to an exocytotic process in plant development and supports the hypothesis that exocyst-like proteins are involved in plant exocytosis. Proteomic analyses identified four proteins that accumulate to different levels in wild-type and rth1 primary roots. The preferential accumulation in the rth1 mutant proteome of a negative regulator of the cell cycle (a prohibitin) may at least partially explain the delayed development and flowering of the rth1 mutant.
The root epidermis of angiosperms is composed of two cell types: trichoblasts, which develop into cells bearing long cylindrical root hairs, and atrichoblasts, which do not develop root hairs (Larkin et al., 2003
Unicellular root hairs are one of only a few cell types in higher plants that use localized tip growth for their expansion (Kropf et al., 1998
In maize (Zea mays), three root hair mutants, roothairless1, 2, and 3 (rth1, rth2, rth3), have been identified that are affected in root hair elongation but exhibit normal root hair initiation (Wen and Schnable, 1994
Phenotype of rth1
The rth1-1 mutant was previously isolated from Mutator (Mu) transposon stocks (Wen and Schnable, 1994
Initial mapping of the rth1 locus using B-A translocation stocks placed the gene on chromosome 1L (Wen and Schnable, 1994
Cloning and Sequencing of the rth1 Gene
DNA gel-blot analyses were conducted with Mu-specific hybridization probes to identify Mu-containing DNA fragments that cosegregated with the Mu-induced mutant rth1-1 allele. To facilitate this process, the rth1-1 allele was first backcrossed to non-Mu stocks for three generations to reduce the number of Mu transposons in the genome. Cosegregation analyses revealed a 5.8-kb Mu1-containing EcoRI fragment (Fig. 2A) that cosegregated absolutely with the rth1-1 allele among progeny (97 rth1-1/Rth1 and 80 Rth1/Rth1) of the cross: Rth1/Rth1 x rth1-1/Rth1. To clone this 5.8-kb EcoRI fragment, a
An Independently Generated Allele of rth1 Confirms the Identity of the Cloned Sequence
Analyses of independent mutant alleles allow for the confirmation that a mutant phenotype was generated by a Mu insertion in a particular gene. An additional mutant allele of rth1, rth1-2, was obtained by screening the Pioneer Hi-Bred (Johnston, IA) TUSC (trait utility system of corn) population (Bensen et al., 1995 Searches of the Maize Assembled Genomic Islands (MAGI) Web site (www.plantgenomics.iastate.edu/maize) revealed that there is at least one homolog of rth1 in the maize genome.
The 2,936-bp rth1 transcript contains an open reading frame that encodes an 889-amino acid 100.3-kD protein (as determined with the Expasy pI/Mw tool: http://www.expasy.org/tools/pi_tool.html). Using the BLASTX algorithm (Altschul et al., 1997
RNA-blot analyses were performed with RNA samples isolated from leaves and roots of 2-week-old seedlings. RNA samples from both wild-type (B73) and rth1-1 mutant seedlings were analyzed. A 2.0-kb EcoRI fragment from the full-length cDNA (pYJ5) was used as a hybridization probe to detect rth1 transcripts. A 3-kb transcript that corresponded in size with the isolated full-length cDNA was detected in both roots and in leaves. In rth1-1 mutant roots and leaves, an additional 4.4-kb rth1-1-hybridizing transcript was detected that was not detectable in wild-type roots and leaves. The 3-kb wild-type transcript accumulated to levels about five times higher than the 3.0- and 4.4-kb transcript in rth1-1 roots and leaves (Fig. 4).
Massively Parallel Signature Sequencing Database Expression Profiles of rth1 in Different Organs during Development
To obtain a detailed picture of the spatial and temporal expression of the rth1 gene the massively parallel signature sequencing database (MPSS; Brenner et al., 2000
Proteome Analysis of 5-d-Old rth1 Primary Roots
The only obvious morphological difference in the primary roots of 5-d-old wild-type and rth1-1 seedlings is that the mutants display reduced elongation of the unicellular root hairs formed in the epidermis. The soluble proteomes of 5-d-old wild-type and rth1-1 primary roots were compared in triplicate from independent biological replicates on two-dimensional protein gels with a pH range of 4 to 7 to identify proteins that exhibit at least a 3-fold higher level of accumulation in one of the proteomes. After staining with Coomassie Blue, 158 proteins could be detected from the rth1-1 and wild-type roots. One of these proteins accumulated to significantly higher levels in the wild-type primary root proteome, while three proteins accumulated to significantly higher levels in the proteome of rth1-1 mutants (Table I). Thus, 2.5% (4/158) of the proteins detected in this study accumulated preferentially in wild type or rth1-1. Three of the four differentially accumulating proteins (Table I, protein nos. 1, 2, and 4) were identified via MS-fit (http://prospector.ucsf.edu/ucsfhtml4.0/msfit.htm) database searches in the maize expressed sequence tag (EST) contig (www.maizegdb.org) and the MAGI (www.plantgenomics.iastate.edu/maize) databases using the criteria defined in Hochholdinger et al. (2004a)
Root hair formation starts with pattern specification of the epidermal cells followed by root hair initiation, bulge formation, and, finally, root hair elongation. In the dicot model plant Arabidopsis, numerous mutants that affect each of these steps in root hair formation have been characterized (for review, see Schiefelbein, 2000
In addition, a considerable number of Arabidopsis mutants that affect root hair elongation have been identified. Carol and Dolan (2002)
In monocot cereals, genetic analysis of root development has been initiated only recently (summarized in Hochholdinger et al., 2004b
The RTH1 protein exhibits a high degree of similarity to SEC3 proteins; 95% of the predicted RTH1 protein aligns with the SEC3 consensus sequence (KOG2148.1) generated via the comparison of all available SEC3 proteins with an E-value of 0.0 and a score of 810 bits. The SEC3 protein in yeast and mammals is part of a multiprotein complex composed of eight distinct subunits designated exocyst. The exocyst complex is crucial for the precise specification of the site of vesicle docking and fusion during exocytosis (Elias et al., 2003
A growing body of evidence suggests the existence of exocyst-like complexes in plants. Database searches have identified in the Arabidopsis and rice genomes homologs of all the exocyst subunit genes (Elias et al., 2003
Although it is becoming clear that plants do contain exocyst-like complexes, their functions have not yet been determined. Because rth1 mutants exhibit perturbed root hair elongation, our findings that RTH1 is a SEC3 homolog indicates that in plants exocyst components are required for normal exocytosis in the tip of root hairs. Interestingly, pollen tube growth, which also occurs via tip growth, does not appear to be affected by the rth1 mutant. This finding is consistent with our observation that, like the Arabidopsis and rice genomes (Elias et al., 2003
MPSS analyses revealed that Rth1 transcripts accumulate in all tissues analyzed. This is consistent with the pleiotropic phenotypes associated with the rth1-1 mutant (Wen and Schnable, 1994
When grown under field conditions, rth1-1 mutant plants are stunted, produce purplish leaves, do not form ears, only rarely produce tassels, and even more rarely shed pollen (Wen and Schnable, 1994
In summary, the cloning of the maize rth1 gene, along with the results of Cole et al. (2005)
Isolation of New rth1 Alleles and Maintenance of the Mutant Stocks
The root hair elongation mutant rth1-1 was maintained by backcrossing heterozygous plants to the inbred lines B73 over numerous generations as described previously (Wen and Schnable, 1994 A deletion derivative of rth1-2, rth1-2d, was identified via a forward genetic screen. Heterozygous rth1-2/Rth1 plants that carried an active Mu transposon system were crossed to rth1-1/Rth1 plants (rth1-1/Rth1 x rth1-2/Rth1 Mu). A phenotypic screen of the resulting F1-progeny resulted in the isolation of the rth1-2d allele.
After the initial B-A translocation mapping of rth1 to the long arm of chromosome 1 (Wen and Schnable, 1994
Genomic DNA was extracted from 4-week-old freeze-dried leaves via a cetyl-trimethyl-ammonium bromide protocol (Saghai-Maroof et al., 1984
After the identification of a DNA fragment that cosegregated with the mutant phenotype in DNA gel-blotting experiments with a Mu-specific probe, a size-selected library containing 5.5 to 6.0 kb EcoRI-digested genomic DNA fragments cloned into
The MPSS technology allows for the quantification of 17-bp sequences in populations of 2 x 105 to 2 x 106 cDNAs. These 17-bp signature sequences almost always correspond to unique cDNAs thus allowing the quantification of the abundance of a particular cDNA in a sample representing a particular organ and developmental stage (Christensen et al., 2003
Soluble proteins of wild-type and rth1-1 roots collected from segregating families backcrossed to B73 for 12 generations were isolated from 5-d-old primary roots as described previously (Hochholdinger et al., 2004a Upon request, all novel materials described in this publication will be made available in a timely manner for noncommercial research purposes, subject to the requisite permission from any third-party owners of all or parts of the material. Obtaining any permissions will be the responsibility of the requestor. A Material Transfer Agreement governs the distribution of the rth1-2 mutant; inquiries should be directed to Dr. Wesley Bruce. Sequence data from this article have been deposited with the EMBL/GenBank data libraries under accession number AY265854.
We thank Dr. Bob Meeley (Pioneer Hi-Bred International) for assistance in isolating the rth1-2 allele, Drs. Viktor Zarsky (Charles University, Prague) and John Fowler (Oregon State University) for sharing results prior to publication, Dr. Alice Barkan (University of Oregon) for the generous gift of a B73 seedling cDNA library, and Katrin Woll (University of Tuebingen) for helpful comments on the manuscript. Received March 4, 2005; returned for revision April 8, 2005; accepted April 21, 2005.
1 This work was supported by Pioneer Hi-Bred International (grant to P.S.S.) and by Hatch Act and State of Iowa funds. Research on root biology in F.H.'s laboratory is supported by the German Scientific Council (grant nos. HO1149/4, HO1149/6, and SFB446/B16 to F.H.).
2 These authors contributed equally to the paper. Article, publication date, and citation information can be found at www.plantphysiol.org/cgi/doi/10.1104/pp.105.062174. * Corresponding author; e-mail schnable{at}iastate.edu; fax 5152945256.
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