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First published online November 18, 2005; 10.1104/pp.105.066472 Plant Physiology 139:1970-1983 (2005) © 2005 American Society of Plant Biologists A Wound-Responsive and Phospholipid-Regulated Maize Calcium-Dependent Protein Kinase1,[W] yna Dobrowolska yna Muszy ska*Institute of Biochemistry and Biophysics, Polish Academy of Sciences, 02106 Warsaw, Poland (J.S., M.K., A.L., A.C., S.K., G.D., G.M.); and Department of Botany, University of Florida, Gainesville, Florida (A.C.H.)
Using protein sequence data obtained from a calcium- and phospholipid-regulated protein kinase purified from maize (Zea mays), we isolated a cDNA encoding a calcium-dependent protein kinase (CDPK), which we designated ZmCPK11. The deduced amino acid sequence of ZmCPK11 includes the sequences of all the peptides obtained from the native protein. The ZmCPK11 sequence contains the kinase, autoregulatory, and calmodulin-like domains typical of CDPKs. Transcripts for ZmCPK11 were present in every tested organ of the plant, relatively high in seeds and seedlings and lower in stems, roots, and leaves. In leaves, kinase activity and ZmCPK11 mRNA accumulation were stimulated by wounding. The level of ZmCPK11 is also increased in noninjured neighboring leaves. The results suggest that the maize protein kinase is involved in a systemic response to wounding. Bacterially expressed glutathione S-transferase (GST)-ZmCPK11 was catalytically active in a calcium-dependent manner. Like the native enzyme, GST-ZmCPK11 was able to phosphorylate histone III-S and Syntide 2. Phosphorylation of histone was stimulated by phosphatidylserine, phosphatidylinositol, and phosphatidic acid, whereas phosphatidylcholine, lysophosphatidylcholine, phosphatidylethanolamine, diolein, and cardiolipin did not increase the enzymatic activity. Autophosphorylation of GST-ZmCPK11 was stimulated by calcium and by phosphatidic acid and, to a lesser extent, by phosphatidylserine. Phosphatidylcholine did not affect autophosphorylation. These data unequivocally identify the maize phospholipid- and calcium-regulated protein kinase, which has protein kinase C-like activity, as a CDPK, and emphasize the potential that other CDPKs are regulated by phospholipids in addition to calcium.
Calcium is an important secondary messenger in signaling pathways that respond to hormonal and environmental stimuli (Evans et al., 2001
CDPK protein sequences include five domains: N-terminal variable domain, catalytic domain, junction domain (JD), calmodulin-like domain (CLD), and C-terminal domain. The catalytic domain of CDPKs is characteristic of Ser/Thr protein kinases. The JD is an autoinhibitory domain, which is a basic region composed of 31 amino acids that functions as a pseudosubstrate. The CLDs of typical CDPKs are composed of four EF-hand calcium-binding motifs and share 30% to 40% amino acid sequence identity with plant and animal calmodulins. Binding of calcium ions to the CLD causes conformational changes in the protein, leading to removal of the pseudosubstrate sequence from the active site and activation of the enzyme. The N- and C-terminal domains are variable, differing in their length and amino acid composition among various CDPK isoenzymes. It has been suggested that these variable domains determine the specific functions of individual CDPKs (Harmon et al., 1994
Activity of some CDPKs can be stimulated by lipids. Activities of a CDPK bound to the cell membrane of oat (Avena sativa) and of AtCPK1 (formerly AK1) from Arabidopsis (Arabidopsis thaliana) are stimulated by phosphatidylinositol (PI), lysophosphatidylcholine (LysoPC), and a crude lipid fraction (Schaller et al., 1992
In addition to a role in regulation of the activity of metabolic enzymes (for review, see Cheng et al., 2002
CDPKs also participate in signaling during the early stages of pathogen recognition leading to activation of plant defense mechanisms. Pathogen response pathways are often activated by interaction between a pathogen-encoded elicitor (such as the Cladosporium fulvum Avr 9 peptide) and a plant-encoded receptor (such as the tomato [Lycopersicon esculentum] Cf-9 resistance protein). This interaction in Cf-9 transgenic tobacco (Nicotiana tabacum) leads to activation by phosphorylation of CDPK (NtCDPK2), suggesting that CDPKs play an essential role in a plant defense response (Romeis et al., 2000
We identified a 54-kD CDPK in maize seedlings (previously called ZmCPKp54). This kinase is stimulated by PS and PI in addition to calcium ions (Szczegielniak et al., 2000
Purification and Microsequencing of a Calcium- and Phospholipid-Activated Protein Kinase
Purification of the protein kinase with a relative molecular mass of 54 kD was based on the previously elaborated procedure (Szczegielniak et al., 2000
Cloning and Sequence Analysis of the cDNA Encoding ZmCPK11
The strategy for cloning is illustrated in Figure 2. In the reverse transcription (RT)-PCR reactions using total RNA from maize seedlings as the template and appropriate primers (1 and 2, or 1 and 3; primer sequences are provided in Table II), products of 357 and 1,065 bp were obtained. The sequences of these two clones are similar to known CDPKs, but also include the sequence of a new CDPK. Using primers 3 and 4 or 4 and 5, DNA fragments of 1,296 and 1,737 bp, respectively, were obtained. Sequence analysis revealed that the cloned DNA was derived from one mRNA species. The 1,737-bp clone encodes a protein of 510 amino acids with a deduced molecular mass of 56.5 kD. Analysis of the nucleotide sequence shows that this clone contains an uninterrupted open reading frame (ORF), which begins at nucleotide position 4 and terminates at position 1,536. In an overlapping expressed sequence tag (EST; accession no. AI770867), there is an in-frame stop codon 30 nucleotides upstream from the ORF, indicating that our clone contains the full-length coding sequence. The clone was designated ZmCPK11 (and assigned accession no. AY301062). The predicted protein includes structural features of CDPKs. It additionally contains a 3' noncoding sequence. Sequences of all four microsequenced peptides are included in the predicted sequence of ZmCPK11 (Fig. 1). Peptide I comes from the N-terminal, variable domain, whereas the rest of the peptides are from conserved parts of ZmCPK11. The protein sequence of ZmCPK11 shows similarity to other CDPKs, including OsCDPK (AY144497), 91% identity; CDPK
In all CDPKs, the kinase catalytic domain, CLD, and JD are highly conserved. The kinase domain of ZmCPK11 comprises 264 amino acid residues and contains all 11 conserved subdomains and invariant amino acid residues of eukaryotic Ser/Thr protein kinases. A CLD composed of 145 amino acid residues contains four putative Ca2+-binding EF hands. Between the kinase and CLD lies the JD consisting of 31 amino acid residues. The variable domains of ZmCPK11 are different from those of known CDPKs in sequence and length. The N-terminal domain of ZmCPK11 contains 43 amino acid residues and, contrary to many known CDPKs (Hrabak et al., 2003
To investigate the evolutionary relationship of ZmCPK11 to other CDPKs that are stimulated by phospholipids, a phylogenetic analysis was performed using the kinase catalytic domains. To simplify the analysis, catalytic domains without deletions and insertions (Supplemental Table I) were used. Figure 3 shows a consensus parsimony tree constructed with a subset of sequences from Supplemental Table I and rooted by designating the algal sequence (Chlamydomonas eugametos) as the outlier. The CDPKs included in the tree are either activated by phospholipids, induced by stress, or expressed in male tissues. In this simplified analysis, AtCPK1 and AtCPK2 are located on separate branches, whereas in the tree for the Arabidopsis CDPK/SnRK superfamily (Hrabak et al., 2003
Characterization of GST-ZmCPK11 To assess the properties of ZmCPK11, the full-length ORF was expressed in Escherichia coli as a glutathione S-transferase (GST)-fusion protein. The purified recombinant protein migrated at the expected molecular mass in a denaturing electrophoretic gel. The GST-ZmCPK11 protein was the predominant band eluted from the affinity matrix with 10 mM glutathione (Fig. 4A). The identity of GST-ZmCPK11 was confirmed by western blots using antibodies against CLD and GST (Fig. 4, B and C, respectively). The recombinant kinase was able to phosphorylate both histone III-S and Syntide 2 (Fig. 5, A and B). Phosphorylation of histone III-S was maximal in the range 0.5 to 1.0 mg mL1, whereas higher concentrations were inhibitory. The rate of Syntide 2 phosphorylation increased proportionally up to 100 µM. The Vmax for histone III-S phosphorylation was 57 nmol min1 mg1, which is about 3 times lower than that for Syntide 2 phosphorylation. The activity of recombinant ZmCPK11 was tested in the presence of <10 pM to 36 µM free Ca2+. The calcium requirement depended upon the nature of the substrate. Histone III-S was not phosphorylated in the presence of approximately 0.5 µM free Ca2+. At approximately 1.6 µM free Ca2+, 50% of the full activity was observed (Fig. 5C). In contrast, Syntide 2 phosphorylation was not completely inhibited by EGTA; about 10% of full activity was observed in the presence of EGTA without the addition of calcium. Half-maximal activity was observed at 30 nM of free calcium (Fig. 5D).
Apart from calcium, the influence of phospholipids at the concentration 0.1 to 2.0 mg mL1 on activity of recombinant ZmCPK11 was tested. The concentrations of phospholipids that exhibit the strongest effect on enzyme activity are shown in Figure 5E. Phosphorylation of histone III-S by GST-ZmCPK11 was stimulated 6- to 9-fold by PS, PA, and PI, and about 2-fold by a crude lipid from maize. Histone phosphorylation was stimulated by PA alone to the same level as stimulation by Ca2+, whereas stimulation of activity by PS was totally calcium dependent (data not shown). The stimulation by PS and PI was comparable with activity of the native enzyme purified from maize seedlings (Szczegielniak et al., 2000 -D-maltoside (DDM; at a concentration in the range of 0.12.0 mM)did not affect the activity of the enzyme, whereas phosphatidylcholine (PC) had an inhibitory effect. The cationic headgroup of PC might act as the negative effector of the phosphorylation of the histone by ZmCPK11. When Syntide 2 was used as the substrate, the stimulation of activity by lipids was small (up to about 50%; Fig. 5F). The autophosphorylation of ZmCPK11 was stimulated effectively by Ca2+ and PA. Stimulation of autophosphorylation by PS was increased upon addition of calcium, whereas Ca2+ did not affect the stimulation by PA. By itself, PA stimulated autophosphorylation of ZmCPK11 to the same extent as Ca2+ in the presence of PS. Autophosphorylation of ZmCPK11 was not affected by PC either in the presence or absence of calcium (Fig. 6).
Expression Patterns of ZmCPK11 in Different Organs Expression of ZmCPK11 in different organs was analyzed by RT-PCR with gene-specific primers from the coding region of the protein kinase (primers 3 and 4). The ZmCPK11 transcript (1,296 bp) was expressed in each of the tested organs with the highest expression being in seedlings (Fig. 7). The transcript level increased after 24 h of imbibition of seeds.
Effect of Wounding on Expression of ZmCPK11
The effect of various types of abiotic stresses (high and low temperature, salinity, H2O2, drought, wounding) and ABA on expression was examined by RT-PCR. Extreme temperatures (4°C and 40°C), 500 µM H2O2, 300 mM NaCl, desiccation, and 100 µM ABA had no significant effect on transcript levels (data not shown). Only wounding of leaves induced accumulation of the ZmCPK11 transcript. Two sets of ZmCPK11 primers were used. The levels of transcripts encoding the 1,296-bp fragment (Fig. 8A), as well as the catalytic domain of ZmCPK11 (792 bp), increased gradually to the maximal level at 6 h and declined 24 h after wounding. The amount of ZmCPK11 transcript amplified with the two primers varied, most probably reflecting the dependence of the rate of amplification upon the length of synthesized fragments. The wound-inducible maize proteinase inhibitor (MPI) gene was used as a positive control (Cordero et al., 1994
Transcript levels of ZmCPK11 were determined separately in wounded and nonwounded leaves at 0, 1, 3, 6, and 24 h (Fig. 9, A and B, respectively). Similar to the results in Figure 8, the amount of the transcript in the wounded leaf increased after 3 h, reaching a maximal level 6 h after wounding. In the noninjured neighboring leaf, no change in transcript level occurred at 3 h, but significantly increased 6 h after wounding and declined 18 h later (Fig. 9B). It should be noted that the basal level of expression of ZmCPK11 in leaves varied to some extent, probably due to handling of the plants during the experiment. The amount of ZmCPK11 transcript increased after touching of leaves to a level lower than that caused by wounding, but with a similar time course (data not shown). Experiments in which the relative expression levels of ZmCPK11 transcript in wounded (Fig. 9C) and neighboring (Fig. 9D) leaves were determined showed that, in both cases, a maximal level of expression was observed 6 h after wounding.
Wounding of leaves affected the enzymatic activity of CDPK of Mr 56,000. Kinase activity increased 15 min after cutting the leaves (Fig. 10) and slowly declined. Twenty hours after wounding, kinase activity had returned to the basal level and was nearly undetectable. In-gel kinase assays performed in the presence of EGTA demonstrated that the kinase activity is Ca2+ regulated (data not shown). Only one protein band in the range of Mr 54,000 to 57,000 was detected by reaction with the antibody against the CLD domain of soybean CDPK (data not shown). The observations that the deduced molecular mass of ZmCPK11 is 56.5 kD and that the expression of ZmCPK11 is regulated in response to wounding suggests that ZmCPK11 was responsible for the changes in CDPK enzymatic activity.
Using amino acid sequence data from a CDPK purified from maize seedlings, which was activated by phospholipids (Szczegielniak et al., 2000
A number of known CDPKs are involved in stress signaling in plants (see introduction). One of the most important abiotic stresses is wounding, which activates signal transduction pathways directed to healing and further defense. These signaling pathways mostly include reversible protein phosphorylation, elevation of the intracellular level of calcium, and transcriptional activation of specific genes (Leon et al., 2001
Since wounding, but not other stresses, induced expression of ZmCPK11 in maize leaves, this suggests that ZmCPK11 is specifically involved in the wound-signaling pathway. Similar to our results with ZmCPK11, the expression of tomato CDPK (LeCDPK1) was enhanced in a rapid and transient manner in wounded leaves, peaking within 4 h of the damage; the mRNA remained high for 4 h longer and then declined (Chico et al., 2002
Plant defense responses occur not only in the attacked organ, but also in systemic organs of model dicot plants. There are indications that elicitors are involved in the initial steps of LeCDPK1 induction in wounded and distal leaves. Moreover, correlation between the time of induction of LeCDPK1 mRNA distant from the site of injury suggests a direct delivery of presynthesized LeCDPK1 mRNA via phloem (Chico et al., 2002
Present data suggest that ZmCPK11 may not only play roles in wound response. The ZmCPK11 transcript was detected in all tested organs: leaves, roots, stem, seeds, and seedlings. The transcript in seeds increased after imbibition, reaching the highest level in seedlings, which are in an intensive elongation phase; this suggests a role for this kinase in postgerminative growth. Two rice CDPK isoforms have different functions in seedling development (Frattini et al., 1999
Apart from de novo synthesis, preexisting CDPK could be activated upon wounding. Present results indicate that activity of a 56-kD CDPK increases within minutes after the wounding and later slowly returns to the basal level. Rapid and transient activation of this CDPK indicates its involvement in the early stages of stress signal transduction. Also, a tomato membrane-bound CDPK is activated 20 min after wounding (Chico et al., 2002
In addition to phosphorylation, CDPKs can be regulated by phospholipids. In the wound-signaling process, membrane lipids could provide secondary messengers affecting protein kinase activity. Many plant species demonstrate a systemic increase in PA levels after wounding (Lee et al., 2001
For biochemical characterization of ZmCPK11, the kinase was expressed in E. coli as a GST-fusion that was soluble and could be purified by affinity chromatography on glutathione-agarose beads. The purified protein displays Ca2+-dependent phosphorylation of histone III-S and Syntide 2. The effect of calcium on histone III-S phosphorylation by recombinant ZmCPK11 is similar to that of the native enzyme (Szczegielniak et al., 2000
The affinity for calcium binding varies between isoforms of CDPKs and is influenced by the type of substrate. For phosphorylation of Syntide 2 by GST-ZmCPK11, a lower concentration of Ca2+ is required than for phosphorylation of histone III-S. Moreover, in contrast to histone phosphorylation, activity of ZmCPK11 with Syntide 2 without added calcium, and in the presence of EGTA, is significantly greater than zero. These results support the previous observation (Lee et al., 1998 Unlike AtCPK1 and DcCPK1, which are also stimulated by phospholipids, ZmCPK11 does not have a myristoylation/palmitoylation site. The ZmCPK11 protein is likely located predominantly in the cytoplasm, as is AtCPK4, which also lacks a myristoylation/palmitoylation site. Our data showing that ZmCPK11 interacts with phospholipids support the idea that this protein kinase could also associate with membranes. There is a possibility that, in stress conditions, ZmCPK11 may be translocated to the membranes, where it can be activated by phospholipids in addition to calcium. The binding of ZmCPK11 to membranes could be relatively weaker than other CDPKs, which undergo myristoylation/palmitoylation. Such a loose association would allow ZmCPK11 to partition between membranes and the cytoplasm. This hypothesis will be investigated in future work. In conclusion, our results demonstrate that some CDPK isoforms can, in a substrate-dependent manner, respond to Ca2+ and lipid signals in response to stress.
Plant Material and Stress Treatments Maize seeds (Zea mays cv Mona), after soaking in water at room temperature overnight, were grown at 26°C on wetted paper for 72 h in the dark. The etiolated apical parts of the seedlings were harvested, immediately frozen in liquid nitrogen, and stored at 80°C. For stress treatments, maize plants were cultivated hydroponically for 2 weeks in a growth chamber with a daily cycle of 14 h light (7080 W/m2) at 25°C and 10 h dark at 20°C. Maize leaves (second and third leaf) were detached, preincubated for 2 h in water, and subjected to one of the following treatments: 4°C or 40°C, laid on Whatman 3MM paper to dry (drought), treated with 300 mM NaCl, 100 µM ABA, or 500 µM H2O2. Mechanical wounding was performed by cutting the lamina of the leaves with a razor blade. The wounded (local) and the upper undamaged (systemic) leaves were harvested at indicated time points. Samples were frozen in liquid nitrogen immediately after harvesting and stored at 80°C until used for RNA or protein extraction.
The initial steps of purification starting with 20 g of maize seedlings included ammonium sulfate precipitation and octyl-Sepharose and DEAE-52 chromatography, and were performed as described previously (Szczegielniak et al., 2000
Determination of activity of the maize protein kinase was described previously (Szczegielniak et al., 2000
Lipids were as follows (purchased from Sigma): PA (1,2-diacyl-sn-glycero-3-P sodium salt) from egg yolk lecithin, PI [1,2-diacyl-sn-glycero-3-phospho-(1-D-myoinositol)] from soybeans (Glycine max), PS (1,2-diacyl-sn-glycero-3-phospho-L-Ser) from bovine brain, PC (1,2-diacyl-sn-glycero-3-phosphocholine, type XVI-E) from egg yolk, LysoPC from soybeans, CL sodium salt from bovine heart, PE (type III) from egg yolk, DO [1,3-Di(cis-9-octadecenoyl)glycerol], and the detergent DDM. PA, PI, PC, LysoPC, and PE were dissolved in chloroform (10 mg mL1), PS and DO were dissolved in chloroform:methanol (95:5, v/v), and CL was dissolved in methanol. Crude lipids were isolated from maize seedlings in chloroform:methanol (2:1, v/v). Then, after adding an aqueous solution of 0.88% KCl, lipids were extracted to the organic phase, concentrated by rotary evaporation, redissolved in chloroform:methanol (2:1, v/v), and stored at 20°C. Before each experiment, the appropriate amounts of each lipid were dried under a stream of nitrogen, and then 20 mM Tris-HCl, pH 7.5, was added and sonicated for 5 min on ice. Detergent (DDM) was dissolved in water.
Nonstressed leaves and stressed leaves were separately ground in liquid nitrogen, and proteins were isolated with 200 µL of extraction buffer (50 mM Tris-HCl, pH 7.5, 250 mM Suc, 2 mM EDTA, 10 mM EGTA, 0.5 µM Na3VO4, 1 mM DTT, 200 µM PMSF, 0.5 µg mL1 leupeptin, 1 µg mL1 aprotinin, 0.7 µg mL1 pepstatin). The suspensions were sonicated three times, each time for 10 s, and centrifuged at 20,000g for 10 min at 4°C, and the pellets were discarded. The supernatants were centrifuged again for 30 min at 4°C. Proteins from supernatant (26 µg/lane) were separated on 8% SDS-polyacrylamide gel containing histone III-S as a substrate (0.5 mg mL1). The rest of the procedure was performed as described previously (Szczegielniak et al., 2000
GST-ZmCPK11 (2 µg) was incubated at 30°C for 8 min using the standard reaction mixture without exogenous substrate.
Active fractions from the final MBP-Sepharose chromatography step were pooled and concentrated with a Centricon 30 concentrator (Amicon). Proteins were separated on preparative 12% SDS-polyacrylamide gels. After Coomassie Blue staining, the gels were washed in water for 1.5 h. The protein band in the range of 53 to 56 kD was excised, lyophilized, and sent to the Protein and Nucleic Acid Facility (Beckman Center, Stanford University Medical Center, Palo Alto, CA) for microsequencing.
Total RNA was prepared from the roots, seedlings, and nonstressed and stressed leaves using Tri Reagent (Molecular Research), following the manufacturer's directions. The quality of RNA was checked by visualizing the ethidium bromide (EtBr)-stained ribosomal RNA in agarose gels containing 1.2% formaldehyde.
One microgram of total RNA from maize seedlings was reverse transcribed for 60 min at 42°C in a 20-µL reaction volume containing 1 unit of enhanced avian reverse transcriptase, 500 µM each dNTP, 1 unit of RNase inhibitor (Kit HSRT 100; Sigma), and 1.25 µM primer 3. Two microliters of the RT reaction were used for PCR in a 50-µL volume containing 1 unit JumpStart AccuTag LA polymerase, 200 µM each dNTP, and 625 nM of primers 1 and 2, or 1 and 3. The PCR conditions were 3 min, 94°C (first cycle); 45 s, 94°C; 1 min, 55°C; 2 min, 68°C (30 cycles); and 10 min, 68°C (final cycle). The sequences of tryptic peptides, derived from the microsequencing data, were used to design primers 1, 2, and 3 (Table II). The forward primer 1 corresponds to the sequence EIQIMHH located in the third subdomain of the catalytic kinase domain. The reverse primer 2 corresponds to the sequence PYYVAPEVL located in the eighth subdomain of the catalytic domain. Reverse primer 3 corresponds to the sequence LVSAFAFFDK located in the regulatory CLD of CDPK. Two resulting DNA fragments of 357 and 1,065 bp were cloned into a pGEM-T Easy vector (Promega) and sequenced. For cloning the full-length ORF, two additional specific primers were synthesized, based on maize EST sequences. The forward primer 4 was based on the sequence of a 575-bp EST clone (AI770867). In this clone, the peptide TKLPQLVTAPAPSSGRPASVLPYK, obtained from microsequencing of the purified protein kinase, was present. The sequence of this EST is similar to the end of the N-variable domain and the part of the catalytic domain of CDPKs. This indicated that the 575-bp EST clone is a fragment of ZmCPK11, containing the 5' noncoding region and sequence encoding the N terminus. The reverse primer 5 is based on a second 590-bp EST sequence (accession no. AI745945), where the 5' end overlapped by 102 bp with the 3' end of our 1,065-bp clone. The 590-bp EST clone includes a 3' noncoding region and the sequence encoding the C terminus and part of the CLD. The reaction conditions for the synthesis of the first-strand cDNA with the reverse transcriptase and total RNA from maize seedlings as a template were as before, except that primer 5 was used. For PCR, 2 µL of reverse transcriptase reaction and the pair of primers 4 and 3 or 4 and 5 were used. In the remaining PCR conditions, the reactions were as before. The two DNA fragments obtained were cloned into pGEM-T Easy and sequenced.
The full-length ZmCPK11 cDNA was amplified by PCR using primers 6 and 7 (Table I) and cloned into pGEM-T Easy. The sequence was confirmed by DNA sequencing. For expression of the GST-ZmCPK11 in bacteria, the ZmCPK11 ORF was cut from pGEM-T Easy using XmaI/NotI restriction sites and cloned to pGEX4T-1 (Amersham-Pharmacia Biotech). The ZmCPK11 construct was transformed to E. coli BL21 (DE3). Expression was induced with 0.5 mM IPTG for 4 h at 18°C. The fusion protein was expressed and purified using gluthathione-agarose beads, according to the manufacturer's instructions (Amersham-Pharmacia Biotech AB).
Polyclonal antibodies against the CLD of soybean CDPK
Total RNA was isolated from different maize organs: dry and soaked seeds, seedlings, roots, stem, and leaves (stressed or nonstressed). One microgram of RNA was reverse transcribed for 60 min at 47°C in 20 µL of reaction mixture containing 1 unit of enhanced avian reverse transcriptase, 500 µM each dNTP, 3.5 µM anchored oligo(dT) primer, 1 unit RNase inhibitor (kit, HSRT 100; Sigma). One microliter of the RT reaction was used for PCR in 20 µL of volume containing 0.4 units of Taq DNA polymerase (Fermentas), 200 µM each dNTP, 1.5 mM MgCl2, and 625 nM of the appropriate primers. Routine PCR conditions were 3 min, 94°C (first cycle); 30 s, 94°C; 30 s, 55°C; 1 min, 72°C (25 cycles for actin and MPI and 30 cycles for ZmCPK11); and 10 min, 72°C (final cycle). The PCR products were separated on 0.8% agarose gels and visualized by EtBr staining. ZmCPK11 mRNA was quantified relative to RNA loading using Gel Doc (Bio-Rad). The absence of genomic DNA in RNA samples was checked by PCR reaction, using RNA as a template instead of cDNA (without RT). No product was detected, indicating that the RNA samples were free of DNA.
Sequences of CDPKs were found using SMART (http://smart.embl-heidelberg.de; Schultz et al., 1998 Sequence data from this article can be found in the GenBank/EMBL data libraries under accession numbers AY301062 and AAP57564.
We are very grateful to Professor Jan A. Miernyk for patient correction of the manuscript and critical comments. We thank Ms. Katarzyna Róg for assistance in manuscript preparation. Received June 2, 2005; returned for revision August 12, 2005; accepted September 15, 2005.
1 This work was supported by grants from the State Committee for Scientific Research (KBN), Poland (grant nos. 3 P06A 00825 and PBZKBN110/PO4/21 to G.M. and grant no. PBZKBN110/PO4/20 to G.D.).
The author responsible for distribution of materials integral to the findings presented in this article in accordance with the policy described in the Instructions for Authors (www.plantphysiol.org) is: Gra
[W] The online version of this article contains Web-only data. Article, publication date, and citation information can be found at www.plantphysiol.org/cgi/doi/10.1104/pp.105.066472. * Corresponding author; e-mail muszynsk{at}ibb.waw.pl; fax 48226584636.
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