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First published online May 12, 2006; 10.1104/pp.106.080481 Plant Physiology 141:1012-1020 (2006) © 2006 American Society of Plant Biologists A Suppressor of fab1 Challenges Hypotheses on the Role of Thylakoid Unsaturation in Photosynthetic Function1Institute of Biological Chemistry, Washington State University, Pullman, Washington 991646340 (L.B., P.V., A.S.C., J.B.); and Botany Department, Michigan State University, East Lansing, Michigan 488241312 (S.M.)
Leaf membrane lipids of the Arabidopsis (Arabidopsis thaliana) fatty acid biosynthesis 1 (fab1) mutant contain a 35% to 40% increase in the predominant saturated fatty acid 16:0, relative to wild type. This increase in membrane saturation is associated with loss of photosynthetic function and death of mutant plants at low temperatures. We have initiated a suppressor screen for mutations that allow survival of fab1 plants at 2°C. Five suppressor mutants identified in this screen all rescued the collapse of photosynthetic function observed in fab1 plants. While fab1 plants died after 5 to 7 weeks at 2°C, the suppressors remained viable after 16 weeks in the cold, as judged by their ability to resume growth following a return to 22°C and to subsequently produce viable seed. Three of the suppressors had changes in leaf fatty acid composition when compared to fab1, indicating that one mechanism of suppression may involve compensating changes in thylakoid lipid composition. Surprisingly, the suppressor phenotype in one line, S31, was associated with a further substantial increase in lipid saturation. The overall leaf fatty acid composition of S31 plants contained 31% 16:0 compared with 23% in fab1 and 17% in wild type. Biochemical and genetic analysis showed that S31 plants contain a new allele of fatty acid desaturation 5 (fad5), fad5-2, and are therefore partially deficient in activity of the chloroplast 16:0 7 desaturase. A double mutant produced by crossing fab1 to the original fad5-1 allele also remained alive at 2°C, indicating that the fad5-2 mutation is the suppressor in the S31 (fab1 fad5-2) line. Based on the biophysical characteristics of saturated and unsaturated fatty acids, the increased 16:0 in fab1 fad5-2 plants would be expected to exacerbate, rather than ameliorate, low-temperature damage. We propose instead that a change in shape of the major thylakoid lipid, monogalactosyldiacylglycerol, mediated by the fad5-2 mutation, may compensate for changes in lipid structure resulting from the original fab1 mutation. Our identification of mutants that suppress the low-temperature phenotype of fab1 provides new tools to understand the relationship between thylakoid lipid structure and photosynthetic function.
The chloroplast membranes that are host to the light-harvesting and electron-transport reactions of photosynthesis have a characteristic and unusual lipid composition. One remarkable feature is the high number of double bonds found in the lipid acyl chains. Typically, only about 10% of the fatty acids that compose the hydrophobic midportion of the thylakoid bilayer lack double bonds altogether, whereas more than 80% have two or more double bonds (Harwood, 1982
The Arabidopsis desaturation mutants fad5, fad6, fad7 fad8, and fad3 fad7 fad8 all show chlorosis and reduced growth rates when grown at 4°C, but the plants are nevertheless able to complete their life cycle (Hugly and Somerville, 1992 The collapse of photosynthesis and breakdown of chloroplasts that occurs in fab1 plants at 2°C is the most dramatic effect of temperature on photosynthesis among the Arabidopsis fatty acid mutants. Improved knowledge of this aspect of the fab1 phenotype will likely lead to a better understanding of the relationship between thylakoid lipid structure and photosynthetic function. In this article, we describe the isolation of suppressor mutations that rescue fab1 from death at low temperatures. Surprisingly, one of the suppressors is an allele of fad5; thus, a further increase in the proportion of saturated fatty acids in the photosynthetic membrane is associated with maintenance of photosynthetic function and viability of the plants at 2°C.
A Functional Screen for fab1 Suppressors
Before beginning the suppressor screen, the fab1 mutation was crossed into the glabrous (gl1) mutant background (Koornneef et al., 1982
Reciprocal crosses between mutant plants and fab1 yielded F1 plants that were cold sensitive, like the fab1 parent. Plants in the F2 populations segregated approximately 25% cold-tolerant individuals. These results indicate that each line contains a single recessive, nuclear mutation that confers suppression of the fab1 cold-sensitive phenotype. Four of the suppressors, S1, S31, S101, and S106, were indistinguishable from wild type and fab1 in size and appearance when grown under standard culture conditions at 22°C. Plants of the S7 line were slightly reduced in size, but nevertheless were robust plants that produced abundant seed. The modestly smaller stature of S7 plants was still evident in plants that had been backcrossed to the fab1 parental line through three generations. This result suggests that the suppressor mutation in the S7 line may have additional pleitropic effects on plant growth, although we cannot at present exclude the possibility that mutation(s) in other genes tightly linked to the suppressor locus are responsible for the altered phenotype.
To further investigate the suppressors, plants of the S1, S7, S31, S101, and S106 lines were grown together with fab1 and wild-type controls at 22°C for 25 d, and then transferred to 2°C. After 3 weeks at 2°C, all the plants were similar in appearance. Between 3 and 4 weeks, fab1 plants began to show some chlorosis relative to wild type, and all of the suppressors also became slightly chlorotic. In appearance, the suppressors were not readily distinguished from fab1, and wild-type plants were only slightly more green in color. These results are consistent with our previous observations that fab1 leaves remain green at 2°C even after photosynthesis has collapsed and the chloroplasts show extensive damage (Wu et al., 1997 Although fab1 plants could not be easily distinguished from wild-type and suppressor plants by size or appearance, measurements of the potential quantum yield of photosynthesis, Fv/Fm, clearly established that the suppressors act by allowing photosynthetic function to be maintained. After 28 d at 2°C, Fv/Fm measured on fab1 leaves was only 0.10, and after 38 d it was essentially 0 (Table I ). By contrast, Fv/Fm in the suppressor lines was between 70% and 98% of the wild-type controls.
The Suppressors Remain Viable after Prolonged Cold Treatment
fab1 plants died after 5 to 7 weeks at 2°C as indicated by their failure to recover when transferred to warmer growth temperatures. Plants from all five suppressor lines remained alive at 2°C but they grew very little in size because the production and expansion of new leaves was substantially offset by senescence and death of mature leaves. Beyond 7 weeks at 2°C, all the suppressors were chlorotic and showed other symptoms of tissue damage. Figure 2
shows plants of the S1, S7, S31, and S106 lines after 14 weeks at 2°C. The fab1 controls in this experiment are clearly dead. The wild-type controls, while healthy, are still small plants that have grown very slowly during 14 weeks at 2°C. The relative growth rate of wild-type Arabidopsis at 2°C is less than one-tenth of the rate at 22°C (Wu et al., 1997
In S31 Plants Suppression Is Associated with Increased 16:0
We next analyzed the overall fatty acid composition of leaf lipids in each of the suppressor lines. The compositions determined for plants of S101 and S106 were similar to that of the fab1 mutants (data not shown), but the S1, S7, and S31 lines all showed substantial changes from the parental fab1. In both S1 and S7 plants, 16:3 is reduced to approximately one-third of the proportion found in fab1, and there are concomitant increases in the proportions of 18:2 and 18:3 fatty acids (Table II
). Leaves of S31 plants also have reduced 16:3 but this is accompanied by a substantial increase in 16:0. These changes in leaf fatty acid composition suggest that each of these three suppressor lines has a mutation affecting the prokaryotic pathway of lipid synthesis: the chloroplast-resident pathway that is the only route to synthesis of 16:3 (Browse et al., 1986
To find out if the S1, S7, and/or S31 lines are allelic, we made reciprocal crosses between them. Leaves of F1 progeny from all six possible crosses had fatty acid compositions similar to fab1 (>10% 16:3), indicating that S1, S7, and S31 contain mutations at distinct loci. Tests on plants from our backcrossing experiments indicated that the altered fatty acid composition in each of the lines cosegregated with the suppressor phenotype. The finding that three nonallelic suppressors all have reduced synthesis of the prokaryotic lipid 16:3 suggests that changes in chloroplast lipid metabolism may result in compensating changes in thylakoid lipid composition that alleviate the damage caused by the fab1 lesion at 2°C. However, it is important to point out that cosegregation cannot definitively rule out the possibility in each case that the altered fatty acid composition is caused by a mutation that is distinct from, but closely linked to, the suppressor locus.
The overall fatty acid composition of S1 and S7 leaves is similar to that of the Arabidopsis gly1 mutant, which is deficient in glycerol-3-P dehydrogenase activity (Miquel et al., 1998
The combination of increased 16:0 and decreased 16:3 found in leaf tissue of S31 plants suggested the possibility that this line contained a leaky mutation at the fad5 locus. The FAD5 gene encodes the chloroplast
To discover more about lipid metabolism in the S31 line, we grew wild-type, fab1, and S31 plants side by side, separated individual lipids from leaf extracts, and analyzed their fatty acid compositions by gas chromatography (GC). In fab1 plants, the fatty acid composition of MGD is similar to wild type, with 35% 16:3 and less than 5% 16:0 (Table III
). This agrees with previous findings that MGD is the membrane lipid least affected by the accumulation of 16:0 in fab1 leaves (Wu et al., 1994
It is noteworthy that the fatty acid composition of PG from S31 plants is very similar to that of PG from fab1 (Table III). The proportion of high-melting-point fatty acids in this lipid is 70% for S31, in this experiment, compared with 71% in fab1 (and 58% in wild type).
To confirm that the S31 line contained a mutation at the fad5 locus, we made a cross to the original fad5 line characterized by Kunst et al. (1989)
We used PCR to amplify the fad5-2 allele from genomic DNA prepared from S31 plants. Sequencing of the PCR products revealed a single base-pair change relative to the wild-type sequence (GenBank accession no. NM112455) that is a G to A substitution at position 1,638 of the GenBank sequence. This change is predicted to encode an Ala-286 Thr mutation in the sequence of the predicted FAD5 preprotein (Fig. 4
). The fad5-1 allele encodes a Trp-98 stop mutation and is thus likely to be a null allele (Heilmann et al., 2004
We crossed fab1 and fad5-1 to produce a fab1 fad5-1 double mutant. Analysis of the fatty acid compositions of individual leaf lipids of fab1 fad5-1 plants provided data very similar to those shown for S31 in Table III. In particular, both MGD and DGD contained substantially higher proportions of 16:0 than fab1 plants: 45.4% 16:0 in DGD and 30.1% 16:0 in MGD. The MGD from leaves of S31 plants contains 23.5% 16:0, but retains 6.5% 16:3 (Table III), and this suggests that the Ala-286 Thr mutant allele of FAD5 retains a low level of desaturase activity. The fab1 fad5-1 double mutants (and the original fad5-1 line) do not contain any 16:3 in MGD (Kunst et al., 1989
Considerable evidence indicates that membrane lipid composition is a key determinant of plant responses to temperature (Murata et al., 1992
Many plants undergo sharp reductions in growth rate and development at temperatures between 0°C and 12°C. These chilling-sensitive plants include many economically important crops such as cotton (Gossypium hirsutum), soybean (Glycine max), maize (Zea mays), and rice (Oryza sativa). Attempts to link the biochemical and physiological changes associated with chilling injury with a single trigger or site of damage have often focused on the possibility of an L
Characterization of the fab1 mutant demonstrated that high-melting-point PG can only be one component of plant-chilling sensitivity (Wu and Browse, 1995
Two of the suppressor lines show no change in overall leaf fatty acid composition, relative to the parental fab1 mutant. The suppressor mutations in these lines may have introduced a change in the amino acid sequence of a protein that allows the protein to better maintain its function in fab1 thylakoids at 2°C. For example, PG is a component of the light-harvesting complex of PSII (LHCII) as determined by x-ray crystallography (Liu et al., 2004
Mutations may also produce a suppressor phenotype by causing a change in thylakoid fatty acid composition that complements the defect introduced by the fab1 mutation. This appears to be the case for the mutations in the S1, S7, and S31 lines. For S31, the mutation has been defined as an allele of fad5. The overall leaf fatty acid compositions of S1 and S7 plants suggest that they contain mutations affecting the prokaryotic pathway of chloroplast lipid synthesis. However, the mutations are not allelic to each other or to the act1 and gly1 mutations that affect enzymes of prokaryotic lipid synthesis (Kunst et al., 1988
The identification of fad5-2 as the suppressor mutation in line S31 was a surprise to us. We believe that the collapse of photosynthesis and death of fab1 plants at 2°C is caused by the increase in saturated 16:0 fatty acids and most probably by the presence of approximately 70% high-melting-point fatty acids in chloroplast PG (Wu et al., 1997
The fad5 mutations have complex effects on lipid metabolism. Although 16:0 accumulates in MGD, the increase is less than the decrease in 16:3 (Kunst et al., 1989
It is noteworthy that the fab1 mutation increases 16:0 in PG and DGD, but that MGD is largely unaffected, relative to wild type (Table III; Wu et al., 1994
We considered the possibility that the proportions of different lipids within the thylakoids might be a factor in suppressing the low-temperature phenotype. In both higher plants and algae, it has been observed that growth at low temperatures increases the ratio of DGD to MGD (Lynch and Thompson, 1982
The observation that the S1 and S7 lines as well as the fab1 fad5-2 (S31) suppressor have reduced levels of 16:3 compared with fab1 (and wild type) may make it tempting to suggest that the lower levels of 16:3 in MGD are somehow directly responsible for suppression. However, in S1 and S7, 16:3 MGD is largely replaced by 18:3 (data not shown), and our understanding of the biophysics of these two fatty acids does not provide any rationale for a substantial change in molecular or membrane properties. Furthermore, available evidence indicates that decreased 16:3 is correlated with lower leaf chlorophyll content (Heilmann et al., 2004
However, the replacement of 16:3 in MGD of fab1 fad5-2 plants by the saturated acyl group 16:0, is predicted to change the shape of the MGD molecule to a more narrow cone (Gounaris et al., 1983 Clearly, the relationship between thylakoid lipid structure, photosynthetic function, and plant temperature responses is very complex. Further analysis of the genes and mutants found in our suppressor screen will provide a means to develop and test new hypotheses about the mechanistic bases of this relationship.
Plant Material and Growth Conditions
Arabidopsis (Arabidopsis thaliana) ecotype Columbia was used as the wild type in this study. Plants of the fab1 mutant (Wu et al., 1994
Approximately 5,000 seeds from each M2 pool were surface sterilized, stratified for 2 d at 4°C, and then spread evenly on a 15-cm petri dish containing 1x Gamborg's B-5 basal salts (Sigma Aldrich) in 1% agar. Petri dishes were sealed with porous tape and germinated at 22°C under a 16-h photoperiod of 80 µmol quanta m2 s1. After 12 d, petri dishes were moved to the growth chamber at 2°C under constant illumination of 100 µmol quanta m2 s1. After 4 weeks at 2°C, when the fab1 gl1 control plants were chlorotic, survivors among the M2 seedlings were selected as putative suppressors of the fab1 low-temperature phenotype. The selected surviving seedlings were transferred to soil and grown to maturity at 22°C. For rescreening of the putative suppressor mutants, seeds were collected from each surviving M2 plant. Ten M3 plants of each suppressor line were grown in pots at 22°C for 20 d before being transferred to a growth chamber at 2°C. The M3 plants were scored for survival after 4 to 6 weeks at 2°C. From each suppressor line, several individual plants showing a surviving chilling phenotype were chosen, transferred to 22°C, and grown to maturity. Based on the second chilling screen, suppressor mutant lines originating from different M2 pools were chosen for further study. All the mutant lines discussed in this paper have been backcrossed to the original fab1 line two to three times with the exception of S101 (one backcross).
The overall fatty acid composition of leaves was determined as previously described (Wu et al., 1994
The more detailed analyses of lipid and fatty acid composition were performed as described previously (Wu et al., 1994
Chlorophyll fluorescence from leaf tissue was measured using a PAM Fluorometer (Walz). The ratio of variable fluorescence to maximal fluorescence (Fv/Fm), representing the potential quantum yield of PSII photochemistry, was measured in dark-adapted leaf tissue. Leaves on intact plants were dark adapted at 22°C for 30 min before each Fv/Fm measurement was made.
A DNA fragment of At3g15850 was amplified from genomic DNA extracted from S31 plants with primers designed to the sequence of wild-type Arabidopsis (GenBank file 30698537). Restriction endonuclease sites suitable for cloning into conventional vectors were added to 5' ends of the primers. The At3g15850 coding region was amplified using the primer combinations 5'-CGCGAATTCTCTTCCTTCTTTCTCTTAGCCAT-3' (primer 1) and 5'-AATGGATCCAGTTGAGTATCTAGAATTGCCGT-3' (primer 2). The amplification protocol included an initial 10-min denaturation step at 94°C, 30 cycles of 30 s denaturation at 94°C, 30 s annealing at 60°C, and 3 min extension at 72°C, followed by 15 min extension at 72°C. To minimize PCR artifacts, Pfu polymerase was used. DNA fragments amplified from genomic DNA in three independent PCR reactions were cloned into pBlueScript (SK+) vectors (Stratagene) and were sequenced individually using universal and custom sequencing primers.
We thank Chris Skidmore for technical assistance, and Jennifer Watts and Jim Wallis for helpful discussions. Received March 15, 2006; returned for revision April 24, 2006; accepted April 26, 2006.
1 This work was supported by the U.S. National Science Foundation (grant no. IBN0084329) and by the Agricultural Research Center, Washington State University.
2 Present address: Department of Plant Sciences, University of Saskatchewan, 51 Campus Drive, Saskatoon, SK, Canada S7N 5A8.
3 Present address: Department of Crop Science, Swedish University of Agricultural Research, S23053, Alnarp, Sweden.
4 Present address: National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894. The author responsible for the distribution of materials integral to the finding presented in this article in accordance with the policy described in the Instructions for Authors (www.plantphysiol.org) is: John Browse (jab{at}wsu.edu). Article, publication date, and citation information can be found at www.plantphysiol.org/cgi/doi/10.1104/pp.106.080481. * Corresponding author; e-mail jab{at}wsu.edu; fax 5093357643.
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