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First published online June 9, 2006; 10.1104/pp.106.084079 Plant Physiology 141:1544-1554 (2006) © 2006 American Society of Plant Biologists A Novel Arsenate Reductase from the Arsenic Hyperaccumulating Fern Pteris vittata1Department of Botany and Plant Pathology (D.R.E., L.G., E.I., J.A.B.), and Department of Horticulture and Landscape Architecture (D.E.S.), Purdue University, West Lafayette, Indiana 47907; and Department of Geological Sciences, University of Saskatchewan, Saskatoon, Saskatchewan, Canada S7N 5E2 (I.J.P.)
Pteris vittata sporophytes hyperaccumulate arsenic to 1% to 2% of their dry weight. Like the sporophyte, the gametophyte was found to reduce arsenate [As(V)] to arsenite [As(III)] and store arsenic as free As(III). Here, we report the isolation of an arsenate reductase gene (PvACR2) from gametophytes that can suppress the arsenate sensitivity and arsenic hyperaccumulation phenotypes of yeast (Saccharomyces cerevisiae) lacking the arsenate reductase gene ScACR2. Recombinant PvACR2 protein has in vitro arsenate reductase activity similar to ScACR2. While PvACR2 and ScACR2 have sequence similarities to the CDC25 protein tyrosine phosphatases, they lack phosphatase activity. In contrast, Arath;CDC25, an Arabidopsis (Arabidopsis thaliana) homolog of PvACR2 was found to have both arsenate reductase and phosphatase activities. To our knowledge, PvACR2 is the first reported plant arsenate reductase that lacks phosphatase activity. CDC25 protein tyrosine phosphatases and arsenate reductases have a conserved HCX5R motif that defines the active site. PvACR2 is unique in that the arginine of this motif, previously shown to be essential for phosphatase and reductase activity, is replaced with a serine. Steady-state levels of PvACR2 expression in gametophytes were found to be similar in the absence and presence of arsenate, while total arsenate reductase activity in P. vittata gametophytes was found to be constitutive and unaffected by arsenate, consistent with other known metal hyperaccumulation mechanisms in plants. The unusual active site of PvACR2 and the arsenate reductase activities of cell-free extracts correlate with the ability of P. vittata to hyperaccumulate arsenite, suggesting that PvACR2 may play an important role in this process.
Arsenic is a naturally occurring, metalloid element that is potentially toxic to most organisms. Arsenic is a known human carcinogen (Hughes, 2002
The genus Pteris (Pteridaceae) is remarkable in that it has several species, including Pteris vittata, that hyperaccumulate arsenic (Visoottiviseth et al., 2002
Like other homosporous ferns, each P. vittata sporophyte produces and releases abundant haploid spores that germinate and develop as autotrophic haploid gametophytes. Each gametophyte consists mostly of a small (approximately 2 mm) single layer of cells. These free-living gametophytes tolerate up to 5 mM arsenate without showing symptoms of arsenic toxicity and hyperaccumulate up to 2% of their dry weight as arsenic (Gumaelius et al., 2004
Arsenic nonaccumulating plants, such as Brassica juncea and Arabidopsis (Arabidopsis thaliana), also reduce of arsenate to arsenite. However, the arsenite that accumulates is coordinated to thiolate ligands and remains sequestered in the root (Pickering et al., 2000a
One approach to identify P. vittata genes required for arsenic tolerance and hyperaccumulation is to make use of the yeast (Saccharomyces cerevisiae) where the molecular mechanisms of arsenic tolerance have been well studied (Bobrowicz et al., 1997
Chemical Speciation of Arsenic in P. vittata While P. vittata gametophytes hyperaccumulate arsenic, it is not known what form of arsenic is stored in the gametophyte. To address this, XAS was applied to bulked, intact, flash-frozen P. vittata gametophytes grown in the presence of 8 mM arsenate. These results show that gametophytes store 95% ± 3% of the accumulated arsenic as arsenite (AsIII), with none of the arsenite coordinated by thiol ligands (Fig. 1 ). The remaining 5% ± 3% of the accumulated arsenic remains as arsenate (AsV). Similar results were also obtained from gametophytes grown in 1.3 and 4 mM arsenate (data not shown). A similar analysis of P. vittata sporophyte frond tissue (Fig. 1) shows that 92% ± 3% of arsenic is stored as arsenite, with 6% ± 2% as arsenate and 2% ± 1% as an As(III) thiolate complex.
Phenotype Suppression Cloning of P. vittata Arsenate Reductase
To identify an arsenate reductase gene in P. vittata, we transformed the arsenate-sensitive yeast strain RM1 (
Sequence Analysis of PvACR2
A BLAST (Altschul et al., 1990
To determine the enzymatic activity of the PvACR2 and Arath;CDC25 proteins they were overproduced in Escherichia coli and purified. PvACR2 was expressed in E. coli from a T7 promoter as an N-terminal fusion with a thioredoxin, S-tag, and six-His tag. Arath;CDC25 was expressed in E. coli from a T7 promoter as an N-terminal fusion with a six-His tag (Landrieu et al., 2004a
Kinetic Properties of PvACR2 Catalyzed Arsenate Reduction The initial rate of arsenate reduction as a function of PvACR2 concentration was determined and shown to increase linearly with increasing concentrations of purified PvACR2 protein (Fig. 4D). The rate of arsenate reduction as a function of arsenate concentration was also determined (Fig. 4E). The data was well fitted by the standard Michaelis-Menten model (V = Vmax x [{S}/{S} + KM]), and kinetic constants (±SD) determined using a nonlinear regression to the data using the Marquardt-Levenberg algorithm (Fig. 4E). The PvACR2 KM for arsenate is 28 ± 8 mM with a Vmax = 0.19 ± 0.02 nmol min1 nmol protein1. Preliminary evidence also suggests that the arsenate reductase of PvACR2, like ScACR2, is inhibited by arsenite (data not shown).
Because PvACR2 and Arath;CDC25 are also similar in sequence to phosphatases, purified PvACR2, ScACR2, and Arath;CDC25 were assayed for phosphatase activity in vitro at pH 6.5 and 7.5. PvACR2 and ScACR2 had very low levels of phosphatase activity (Fig. 4C) consistent with that previously reported for ScACR2 (Mukhopadhyay et al., 2000
Steady-state levels of PvACR2 mRNA were determined by reverse transcription (RT)-PCR and quantitative (q)RT-PCR. As shown in Figure 5A
, PCR products amplified using PvACR2-specific primers could be detected in approximately equal quantities in gametophyte samples grown in the absence or presence of 10 mM arsenate. PvACR2 mRNA levels were also established to be unaffected by arsenate exposure based on qRT-PCR, with little difference in expression in gametophytes grown in the presence of 0 and 10 mM arsenate (
Mechanisms for arsenic uptake and detoxification have been best studied in the yeast and the bacteria E. coli and Bacillus subtilis (for review, see Rosen, 2002
The arsenic hyperaccumulating fern P. vittata is an unprecedented system for the study of arsenic metabolism and the evolution of arsenic tolerance and resistance mechanisms in plants and other multicellular organisms. Here, we show that when grown in the presence of arsenate, the simple, haploid gametophytes of P. vittata convert 90% to 95% of accumulated arsenic to free arsenite, with only a very minor portion of the arsenic being accumulated as an As(III) thiolate complex. Similar results are observed for the diploid sporophyte plant, consistent with previous observations of this and the related species Pteris cretica (Tongbin et al., 2002
Suppression-screening of yeast strain RM1 harboring a deletion of the ScACR2 gene resulted in the isolation of a cDNA from P. vittata gametophytes, which suppresses the arsenate sensitivity phenotype of this yeast mutant. The protein deduced from the cDNA sequence (PvACR2) is similar in size and sequence to ScACR2 and represents the first plant gene identified that almost completely complements the loss of the ScACR2 gene in yeast. The hyperaccumulation of arsenic in RM1, a phenotype not reported previously, is also complemented by the PvACR2 gene. This additional phenotype of RM1 is not unexpected since an arsenate-exporting protein that extrudes arsenate from the cell has not been detected in yeast, which is known to rely on ACR3 to efflux arsenite. That PvACR2 also suppresses the arsenic hyperaccumulation phenotype in
With the exception of PvACR2, ScACR2 and other CDC25-like proteins have in common a HCX5R amino acid motif that also defines the active-site loop of ScACR2 (Streuli et al., 1990
To directly establish that PvACR2 can function as an arsenate reductase, we measured its capacity to catalyze the reduction of arsenate to arsenite using both an indirect coupled assay, first established to measure the arsenate reductase activity of ScACR2, and the direct measurement of arsenite. Both assays confirmed that PvACR2 acts as an arsenate reductase that requires GRX for activity and GSH as the primary electron donor. PvACR2 has a KM for arsenate of 28 ± 8 mM, similar to that reported for ScACR2, which has a KM for arsenate of 35 mM (Mukhopadhyay et al., 2000
We also observed that the closely related Arath;CDC25 protein has a similar capacity to reduce arsenate to arsenite in a GSH- and GRX-dependent manner as PvACR2. Although Arath;CDC25 has been characterized as a phosphatase (Landrieu et al., 2004a
PvACR2 and Arath;CDC25 are similar in sequence to both arsenate reductases and phosphatases (Fig. 3B) so it is unclear if they function as arsenate reductases, phosphatases, or both. Arath;CDC25 has been shown to function as a phosphatase (Landrieu et al., 2004a
We have established that in vitro PvACR2 acts as a specific GSH-dependent arsenate reductase; however, its role in vivo is still speculative. Noninvasive XAS of arsenate-grown P. vittata gametophytes shows that they accumulate arsenite, suggesting that they have the capacity to efficiently reduce arsenate to arsenite in vivo. An analysis of cell-free extracts of P. vittata gametophytes grown in the absence or presence of arsenate revealed that a biochemical capacity to reduce arsenate is present in gametophytes and that this activity is constitutive. The steady-state levels of PvACR2 expression also indicate that the gene is constitutively expressed as PvACR2 mRNA accumulates in both the absence and presence of arsenate. The constitutive activation of various biochemical processes known to be involved in metal hyperaccumulation has been observed in a number of metal hyperaccumulating plants. In the hyperaccumulators Thlaspi caerulescens (Cd/Ni/Zn), Thlaspi goesingense (Ni/Zn), and Arabidopsis halleri (Zn), for example, genes involved in Zn homeostasis, including Zn influx transporters in the ZRT1- and IRT1-like protein (ZIP) family, Zn efflux transporters in the P-type ATP-dependent metal transporter family, Nramp ion-transporter, and cation diffusion facilitator (CDF) families are constitutively expressed at relatively high levels (Pence et al., 2000
While the requirement of the PvACR2 gene for arsenic tolerance or hyperaccumulation in P. vittata has not been established at this time, the results of this study suggest that PvACR2 is likely to play an important role in arsenic metabolism in this species. Its similarity to ScACR2 in structure and function, together with the differences between PvACR2 and Arath;CDC25 in phosphatase activity, also suggests that the evolution of arsenic tolerance in P. vittata may have involved mutations that affected the function of a protein-Tyr phosphatase. A recent study in yeast (Mukhopadhyay et al., 2003
Arsenic K-Edge XAS
Field collected Pteris vittata sporophytes grown in arsenic-contaminated soil were used for XAS. Gametophytes were grown from spores in media (Gumaelius et al., 2004
Strains and plasmids used in this study are described in Table I.
Cloning of PvACR2
The yeast (Saccharomyces cerevisiae) expression library was constructed from RNA purified from P. vittata gametophytes grown in liquid culture (Gumaelius et al., 2004
Liquid culture complementation experiments followed existing procedures (Mukhopadhyay et al., 2000
Phylogenetic analyses were conducted using MEGA version 3 (Kumar et al., 2004
The PvACR2 reading frame was amplified by PCR with primers that added a NcoI and XhoI site to the 5' and 3' ends of the fragment, respectively. The PCR fragment was cloned into pGEM-T (Promega). The resulting plasmid was digested with NcoI and XhoI and the fragment ligated into the NcoI-XhoI site of pET32A (Novagen) in frame with the N-terminal thioredoxin, S-tag, and six-His tag, creating plasmid pET-PvACR2. For protein expression in E. coli, Rosseta pLysS (Novagen) cells transformed with pET-PvACR2 were grown at 37°C in Luria-Bertani medium containing 50 mg/mL ampicillin and 20 µM ZnSO4. At an A600 of 0.5, isopropylthio-
Arsenate reductase activity was measured using a previously established coupled assay (Mukhopadhyay et al., 2000
Cell-free extracts were obtained from 1-month-old shake-grown P. vittata gametophyte cultures grown in 0.5x Murashige and Skoog salts (Sigma M5524) plus 3.9 g/L MES, pH 6.5. Three replicates of cultures grown in 0 or 10 mM KH2AsO4 were assayed. Gametophytes were filtered onto a number 1 Whatman cellulose filter and washed with 2 L distilled, deionized water; 0.3 g of tissue was ground in liquid nitrogen for 15 min, resuspended in 10 mL degassed extraction buffer (0.3 M KCl, 50 mM MOPS/MES, 10 mM
Purified PvACR2, ScACR2, and Arath;CDC25 (10 µM) were incubated for 15 min at 30°C with 100 mM p-nitrophenol phosphate (Sigma) phosphatase substrate in 50 mM MES, 50 mM MOPS, pH 6.5 or 7.5, and 0.3 M NaCl (Mukhopadhyay et al., 2003
P. vittata gametophyte cultures were grown in liquid media for 2 weeks in the presence of 0 or 10 mM KH2AsO4. Gametophytes were harvested, washed with distilled, deionized water, and ground in liquid nitrogen. Total RNA was extracted from approximately 100 mg of gametophytes using a RNeasy Plant Mini kit (Qiagen). First-strand cDNA was synthesized using the SuperScript III kit (Invitrogen). PCR primers were designed using Primer Express 2.0 software (ABI Biosystems). The PvACR2 primers used were 5'-GCATAGCGGACCTGCATGT-3' (forward) and 5'-GCGGCTTCGATTTCTTTCTTG-3' (reverse). P. vittata elongation factor-1b (EF-1b) was used as the internal control and the primers used were EF-1b forward 5'-GAAGCCTTGGGATGATGAAA-3' and EF-1b reverse 5'-CCTCGATCAGGTTGTCCACT-3'. PCR conditions were 2 min at 94°C, 30 cycles of 20 s at 94°C, 20 s at 55°C, and 30 s at 72°C, followed by 5 min at 72°C.
P. vittata gametophyte mRNA was extracted as described above. Primers were designed using Primer Express 2.0 software by ABI Biosystems. The PvACR2 primers used were PvACR2 forward 5'-GCATAGCGGACCTGCATGT-3' and PvACR2 reverse 5'-GCGGCTTCGATTTCTTTCTTG-3'. Actin was used as the internal control and the primers used were Act forward 5'-CAACAGGTATCGTGCTCGACTCT-3' and Act reverse 5'-GGCAATGCGTAACCCTCATAA-3'. The qRT-PCR was run on the ABI Prism 7000 with a dilute cDNA/SYBR green mix (1:2). The primer pair concentration was at 300/300 nM determined from optimization runs with the cDNAs of interest. The manual baseline was set at 9 and 25. The data reflects three technical replications of three different biological samples by qRT-PCR. The
One milliliter of a 24-h yeast culture was filtered onto a 0.45-µm nitrocellulose filter (Whatman) and washed with 10 mL of ice-cold 1 mM EDTA, 20 mM sodium citrate buffer, pH 7.0, followed by a 10-mL ultrapure water wash. The filter plus yeast was digested with 1 mL of concentrated nitric acid (Omnitrace) for 4 h at 115°C, and diluted with 4 mL of ultrapure water. Samples were analyzed using a Perkin Elmer-Sciex DRC-E ICP-MS fitted with an APEX-Q high-sensitivity desolvation system (Elemental Scientific).
Arsenic reductase assays were performed as described above and incubated for 45 min. Arsenate and arsenite levels were measured in 10-µL aliquots of 100,000:1 dilutions of the assay mixture. Analytical conditions were modified from Wangkarn and Pergantis (2000) Sequence data from this article can be found in the GenBank/EMBL data libraries under accession number DQ310370.
D.E.S., J.A.B., D.R.E., and L.G. conceived the experiments. D.R.E. generated the data for Figures 2 (AC), 3, and 4 (A, D, and E); L.G. generated the data for Figures 2D, 4 (B and C), and 5; E.I. performed the RT-PCR assays; and I.J.P. performed XAS analysis and interpretation. D.E.S., J.A.B., L.G., and D.R.E. wrote the article. We thank Barry Rosen and Rita Mukhopadhyay for helpful advice and supplying the yeast strains and the E. coli expression constructs for ScACR2 and EcGRX2, I. Landrieu for supplying the Arath;CDC25 E. coli expression construct, Brett Lahner for help with ICP-MS analysis, Graham George for help with XAS analysis, Hugh Harris for assistance with XAS data acquisition, and Om Parkash and Richard Meager for useful discussions. Received May 24, 2006; returned for revision May 24, 2006; accepted June 1, 2006.
1 This work was supported by the U.S. Department of Energy (grant no. DEFG0203ER63622), by the Indiana 21st Century Research and Technology Fund, by a Canada Research Chair award (to I.J.P.), and by the Natural Sciences and Engineering Research Council, Canada. Work at the Stanford Synchrotron Radiation Laboratory is funded by the U.S. Department of Energy and by the National Institutes of Health. The author responsible for distribution of materials integral to the findings presented in this article in accordance with the policy described in the Instructions for Authors (www.plantphysiol.org) is: Jo Ann Banks (banksj{at}purdue.edu). Article, publication date, and citation information can be found at www.plantphysiol.org/cgi/doi/10.1104/pp.106.084079. * Corresponding author; e-mail banksj{at}purdue.edu; fax 7654945896.
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