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First published online July 14, 2006; 10.1104/pp.106.080093 Plant Physiology 142:168-180 (2006) © 2006 American Society of Plant Biologists
The Ethylene-Insensitive sickle Mutant of Medicago truncatula Shows Altered Auxin Transport Regulation during Nodulation1,[W]Australian Research Council Centre of Excellence for Integrative Legume Research, Genomic Interactions Group, Research School of Biological Sciences (J.P., B.G.R.) and School of Biochemistry and Molecular Biology (U.M.), The Australian National University, Canberra, Australian Capital Territory 0200, Australia
We studied the ethylene-insensitive, hypernodulating mutant, sickle (skl), to investigate the interaction of ethylene with auxin transport during root nodulation in Medicago truncatula. Grafting experiments demonstrated that hypernodulation in skl is root controlled. Long distance transport of auxin from shoot to root was reduced by rhizobia after 24 h in wild type but not in skl. Similarly, the ethylene precursor 1-amino cyclopropane-1-carboxylic acid inhibited auxin transport in wild type but not in skl. Auxin transport at the nodule initiation zone was significantly reduced by rhizobia after 4 h in both wild type and skl. After 24 h, auxin transport significantly increased at the nodule initiation zone in skl compared to wild type, accompanied by an increase in the expression of the MtPIN1 and MtPIN2 (pin formed) auxin efflux transporters. Response assays to different auxins did not show any phenotype that would suggest a defect of auxin uptake in skl. The auxin transport inhibitor N-1-naphthylphtalamic acid inhibited nodulation in wild type but not skl, even though N-1-naphthylphtalamic acid still inhibited auxin transport in skl. Our results suggest that ethylene signaling modulates auxin transport regulation at certain stages of nodule development, partially through PIN gene expression, and that an increase in auxin transport relative to the wild type is correlated with higher nodule numbers. We also discuss the regulation of auxin transport in skl in comparison to previously published data on the autoregulation mutant, super numerary nodules (van Noorden et al., 2006
Nitrogen-fixing nodules are formed on the roots of most legumes as a result of symbiotic interactions between a compatible species of soil bacteria generically called rhizobia and its legumes host. The number of nodules formed and the maturation of those nodules are internally regulated by the plant. This process involves positive and negative regulators, which act in concert systemically and locally to control nodule development.
One mechanism controlling nodule numbers is termed autoregulation of nodulation (AON), in which more mature nodules inhibit the formation of nodules in younger root tissues (Caetano-Anollés and Gresshoff, 1991
In addition, phytohormones are known to control nodule initiation and development (Hirsch, 1992
Within the first few hours after inoculation of roots with rhizobia, a transient inhibition of auxin transport near the site of inoculation has been observed in white clover (Trifolium repens; Mathesius et al., 1998
Auxin transport is also likely to have a role in controlling nodule numbers. In a recent study of the supernodulating (AON) M. truncatula sunn mutant, it was found that the local auxin transport inhibition at the inoculation site occurs in both wild type and sunn. However, long distance auxin transport from the shoot to the root was significantly higher in sunn. In addition, long distance auxin transport was reduced after inoculation in the wild type, but not in the sunn mutant (van Noorden et al., 2006
Ethylene, a gaseous phytohormone, is transiently induced by rhizobia during nodule initiation (Ligero et al., 1986
The interaction between the two hormones in other aspects of root growth has been demonstrated by genetic and physiological studies. For example, ethylene can inhibit auxin transport (Burg and Burg, 1966
Despite the knowledge of hormone interactions in other aspect of plant development, the interaction of ethylene with auxin transport in nodulation has not been tested so far. Here, we examined the ethylene-insensitive mutant, skl, to study the interaction of ethylene signaling with auxin in nodule development of M. truncatula. We used techniques recently developed in our lab to measure long distance and local auxin transport during nodulation (van Noorden et al., 2006
The Hypernodulation Phenotype of the skl Mutant Is Root Controlled
To determine if the hypernodulation phenotype in skl was controlled systemically by the shoot or locally by the root, reciprocal grafts between the wild-type and skl plants were made. Upon inoculation with its symbiont, Sinorhizobium meliloti, a skl shoot grafted onto a wild-type root, showed a wild-type nodulation phenotype (2 ± 1 nodules per plant; Table I
). In contrast, when a wild-type shoot was grafted onto a skl root, a hypernodulation phenotype was observed, although the average nodule number of grafted skl roots was lower than that of the skl control graft (15 ± 5 and 24 ± 7, respectively; Table I). Wild type-to-wild type and skl-to-skl control grafts gave similar results to ungrafted plants. In L. japonicus, grafting of a har1 mutant shoot to a wild-type root resulted in a mutant root phenotype, i.e. short root phenotype (Jiang and Gresshoff, 2002
Long Distance Auxin Transport in the skl Mutant
To study the long distance auxin transport in skl, we first examined the auxin transport in wild-type and skl plants under nonsymbiotic conditions. The auxin movement in 4-d-old seedlings was studied by applying [3H]indole-3-acetic acid (IAA) at the shoot apex between the cotyledons. The amount of radioactivity transported from the shoot apex to the root tip was measured after 3 h of incubation by cutting the root into 5-mm segments and determining the radioactivity in each segment (Fig. 1A
). We showed previously that almost all radioactivity is still incorporated in the IAA molecule under these conditions (van Noorden et al., 2006
Because ethylene has been reported to inhibit auxin transport in other plants, we compared long distance auxin transport in skl with that in wild type upon treatment with the ethylene precursor 1-amino cyclopropane-1-carboxylic acid (ACC). Treatment of seedlings with 1 µM ACC mixed into the agar plate, for 24 h prior to the transport experiment significantly (P < 0.05, ANOVA) reduced auxin transport in wild type (Fig. 1C), but not in skl (Fig. 1D). A similar reduction in auxin transport was found in wild-type roots treated with 10 µM ACC (P < 0.05, ANOVA; data not shown). When the radioactive counts of all root segments were added up, ACC-treated roots contained approximately 70% of [3H]IAA of control-treated roots (73% in a repeat experiment with 1 µM ACC, 83% in an experiment with 10 µM ACC; Supplemental Fig. 1). To test if auxin transport is inhibited by the known auxin transport inhibitor NPA, seedlings were treated with 1 µM NPA, mixed into the agar plate, for 24 h preceding the auxin transport measurements. As shown in Figure 1E, auxin transport in skl plants was significantly (P < 0.05, ANOVA) reduced by NPA. This was similar to the response in wild-type plants (data not shown; van Noorden et al., 2006
To study the involvement of ethylene in long distance auxin transport during nodulation, the wild-type and skl plants were inoculated with S. meliloti at the zone of emerging root hairs, the most susceptible zone for nodulation, 24 h before [3H]IAA was applied. This time point was chosen because it showed maximum long distance auxin transport inhibition in M. truncatula after inoculation in similar assays before (van Noorden et al., 2006
Local Auxin Transport in the Nodulation Zone of skl Plants
Previous studies have shown that local regulation of auxin transport at the inoculation site is independent of long distance auxin transport control and that it might be necessary for nodule initiation (van Noorden et al., 2006
By reversing the position of the [3H]IAA donor block to the apical, rather than the basal end of the root segment in this region of the root, we determined that acropetal transport (from the basally placed auxin donor block toward the root tip) was more than 10 times higher than basipetal transport (from the apically placed block toward a segment 1 cm from the root tip). Approximately 16% of total applied [3H]IAA was transported to the root segment in acropetal direction and only 1.2% in basipetal direction (P < 0.05; Student's t test, n = 10; data not shown). All experiments described below are for acropetal auxin transport (Fig. 3A). As shown in Figure 3B, the [3H]IAA content in the top root segments was more than 2-fold higher in control wild-type than in control skl roots, whereas [3H]IAA level was similar in the bottom segment of control wild-type and skl roots. This increased [3H]IAA level could point to decreased uptake or loading of auxin from the donor block into the root in skl. ACC treatment had no effect on [3H]IAA transport into the top segment of wild-type or skl roots. In contrast, ACC treatment significantly (P < 0.05) reduced the auxin transport into the bottom segment of wild-type roots, acropetal from where the ACC was placed. No reduction of auxin transport was observed in skl roots after ACC treatment. Thus, similar to the results found in the long distance auxin transport experiment, local auxin transport inhibition by ACC requires ethylene signaling through SKL. To examine the local auxin transport in the nodulation zone, we spot inoculated the root at the zone of emerging root hairs with S. meliloti, applied the agar block containing [3H]IAA 6 mm above the inoculation site 4 or 24 h later, and then measured the [3H]IAA transport as described above. After 4 h, reduced auxin transport was measured in wild-type and skl roots into the bottom segment of the root after inoculation (P < 0.05, n = 1220). The amount of auxin was reduced by 23% and 43%, respectively, in wild type and skl (data not shown). After 24 h, S. meliloti inoculation increased [3H]IAA accumulation in the bottom segments in the wild type (Fig. 3C). In marked contrast, S. meliloti inoculation increased [3H]IAA accumulation in the top segment of the skl roots to 3-fold compared to controls, but had no significant effect on [3H]IAA accumulation in the bottom segment (Fig. 3C). These results suggest that the skl mutation (1) does not abolish the early transient local auxin transport inhibition but (2) subsequently increases the local auxin transport or uptake into the root and causes auxin accumulation of acropetally transported auxin in or just above the nodulation zone shortly before nodule initiation.
To examine possible mechanisms by which ethylene affects auxin transport during nodulation, we examined if the expression levels of MtPIN1 and MtPIN2 in skl plants were altered by S. meliloti inoculation. Root segments representing the nodulation zone (11.5 cm length) of inoculated plants were harvested 24 h after inoculation. In parallel to this, equivalent root segments of mock-inoculated plants were harvested as controls. In the absence of S. meliloti, the expression levels of MtPIN1 and MtPIN2 mRNA were similar (P > 0.05) between wild type and skl (Fig. 4, A and B ). When inoculated with S. meliloti, the MtPIN1 mRNA level of wild type was similar (P > 0.05) to that of mock-inoculated control (Fig. 4A), whereas the MtPIN2 expression was slightly but significantly (P < 0.05; Student's t test) increased (Fig. 4B). In skl, both MtPIN1 and MtPIN2 expression levels were significantly increased following inoculation with S. meliloti (P < 0.05; Fig. 4, A and B). These results support our observations of increased auxin transport in skl in the nodulation zone (compare with Fig. 3C).
As PIN gene expression levels did not explain the reduction in auxin uptake in untreated skl roots, we treated plants with different auxins that have different requirements for auxin uptake and export through AUX1 and PIN proteins. To compare the sensitivity to auxin in wild type with skl we treated roots with concentrations of 0.1 to 10 µM IAA, naphthalene acetic acid (NAA), 2,4-dichlorophenoxyacetic acid (2,4-D), and indole butyric acid (IBA) and measured root growth and nodulation. The plants were grown on medium containing auxin from 24 h before inoculation with S. meliloti. The positions of root tips at the time of inoculation were marked on the plates and measured again 2 weeks later. IAA inhibited the root elongation of wild-type and skl plants, and similar effects were obtained with 2,4-D and NAA treatment. However, skl roots showed a greater resistance toward the inhibitory effect of either IAA, 2,4-D, or NAA than wild type, and skl roots were insensitive to the inhibitory effect of IBA (Supplemental Fig. 2).
Exogenous auxins also inhibited nodulation in wild-type and skl plants. In contrast to the greater resistance of skl to inhibition of root growth by auxin, the extent of IAA-induced inhibition of nodulation in skl was similar to that found in wild type (P > 0.05), in which 1 µM IAA almost completely inhibited nodulation (Fig. 5A
). NAA and 2,4-D treatments also reduced nodulation of skl and wild type in a similar fashion to IAA, with 1 µM almost completely inhibiting nodulation in both genotypes (data not shown). In contrast, 1 µM IBA had no effect on nodule numbers in wild type, but it significantly reduced nodule numbers in skl (Fig. 5B). However, the total number of nodules in skl was still higher than in wild type at
To test the effect of reduced polar auxin transport on root growth and nodulation in wild type and skl, roots were treated with the auxin transport inhibitor NPA from 24 h before inoculation. As shown in Figure 6, A and B , NPA reduced root elongation and nodulation of wild type to 40% and 50%, respectively. In contrast, nodulation and root growth of skl were not reduced by NPA.
Our study aimed at answering three questions about the involvement of ethylene during nodulation: (1) Does ethylene affect the long distance transport of auxin from shoot to root, (2) does ethylene affect local auxin transport at the inoculation site, and (3) what is the possible mechanism for the action of ethylene on auxin transport during nodulation? In addition, we compared auxin transport regulation in skl with that to the autoregulation (AON) mutant sunn in M. truncatula.
Inoculation of wild-type roots with rhizobia at the zone of emerging root hairs led to a significant reduction in auxin transport from the shoot to the root, consistent with previous results in M. truncatula (van Noorden et al., 2006
Long distance auxin transport from the shoot to the root in untreated skl plants was similar to the wild type, and different responses were only observed after ACC or Rhizobium inoculation. Both ACC and rhizobia stimulate internal ethylene evolution inside the roots (Ligero et al., 1986
Previous studies have shown that inoculation of roots with rhizobia leads to a transient inhibition followed by an accumulation of auxin around the inoculation site and then in dividing cortical cells (Mathesius et al., 1998
Apart from the effect of skl on auxin transport after inoculation, skl also had a significant negative effect on the amount of auxin taken up into the top root segment in the absence of rhizobia (Fig. 3, B and C). This was surprising because ethylene inhibits auxin transport and therefore we expected that lack of ethylene signaling increased auxin transport. Auxin transport is also affected by auxin itself (Peer et al., 2004
Both the long distance and local auxin transport assays confirmed that ACC inhibits auxin transport in M. truncatula and requires signaling through SKL. To test whether ethylene might act via regulation of transcription of auxin transport proteins, we measured MtPIN1 and MtPIN2 expression. MtPIN2 is the most likely ortholog of AtPIN2 (Schnabel and Frugoli, 2004
To determine indirectly whether ethylene signaling is required for auxin uptake as well as export, and to examine whether ethylene mediates similar responses during nodulation as during root growth, we treated plants with different auxins and auxin transport inhibitors. Influx of IAA and 2,4-D into cells is mediated by auxin-influx transmembrane proteins such as AUX1, while uptake of NAA occurs readily by membrane diffusion (Delbarre et al., 1996 Our results further suggest that ethylene plays a different role in mediating auxin responses during root growth and nodulation. Whereas root growth in skl was less sensitive to IAA, NAA, and 2,4-D than the wild type, nodulation was similarly inhibited in skl and wild type by all three auxins (Fig. 5), suggesting that these auxins do not require ethylene signaling for inhibition of nodulation. In contrast, nodulation in skl was more sensitive to IBA inhibition than the wild type, even though the primary root growth appeared normal after IBA treatment. Therefore, the role of ethylene seems to differ between auxins that require AUX1 and/or PIN transport and those that do not.
The response to NPA in skl showed similar insensitivity for nodulation as well as root growth, suggesting that in both cases NPA acts via ethylene signaling. This is consistent with findings by Suttle (1988)
Both the skl and sunn mutants of M. truncatula show increased nodule numbers. However, nodule numbers in sunn are increased through a Leu-rich repeat receptor kinase acting in the shoot as part of the AON mechanism (Schnabel et al., 2005
In uninoculated roots, auxin transport from shoot to root was approximately 3 times higher in sunn than in wild type, but similar in skl compared to wild type (Table II). In contrast, local auxin transport at the inoculation zone was similar in sunn and wild type, but reduced in skl, even though in both mutants, MtPIN1 and 2 expression was similar to wild type in that root region (Table II). These results, together with the different sensitivities of skl and sunn to auxins and NPA (Table II), suggest that sunn and skl act on the auxin transport machinery by two different mechanisms. Future experiments will be directed at characterizing the mechanisms through which SKL and SUNN act on auxin transport.
Our data support a model in which local auxin transport inhibition is necessary to initiate nodulation, but this does not require ethylene signaling through SKL. This is followed by increased local auxin transport into the nodule initiation zone, whereby ethylene signaling negatively affects auxin uptake into the nodulation zone, partially by affecting PIN1 and 2 gene expression. The regulation of nodule numbers and of long distance auxin transport by skl is different from that in the AON mutant sunn, as SKL acts in the root and SUNN acts in the shoot. Overall, both hypernodulation mutants show increased auxin transport into the primary nodulation zone by local and long distance auxin transport regulation. We hypothesize that this increase in auxin transport into the primary nodulation site is necessary to sustain higher nodule numbers, which are induced by higher numbers of successful infection events in skl. A model summarizing our data is shown in Figure 7 .
Plant and Bacterial Growth Conditions
Seeds of the Medicago truncatula skl mutant were obtained from D.R. Cook (Penmetsa and Cook, 1997
Seeds were surface sterilized, germinated overnight at 28°C in the dark, and grown on 15-cm petri dishes containing F medium. The seedlings were incubated vertically in a growth chamber with a light intensity of 90 µmol m2 s1, and 16 h of light per day at 20°C for 3 d. The grafting technique essentially followed Penmetsa et al. (2003)
Auxin transport measurements were conducted as described in van Noorden et al. (2006)
Roots were spot inoculated with rhizobia in the emerging root hair zone 4 or 24 h before the start of auxin transport measurements, and the inoculation site marked on the plate. For spot inoculation, a glass capillary was pulled over a flame, glued to a hypodermic needle, and autoclaved. A small drop of bacteria (OD600 = 0.1) was placed at the zone of emerging root hairs under a microscope. Alternatively, an agar block (2 x 2 x 4 mm3) containing 1 µM ACC or water (control) agar blocks were placed at the zone of emerging root hairs (Fig. 3A). Just before the start of the experiment, 30 µL of 1 mCi mL1 [3H]IAA (Amersham Biosciences) was diluted in 60 µL of ethanol and mixed into 1.5 mL of melted 4% agarose (approximately pH 4.8) in a small petri dish. Once solid the agar was cut into 2 x 2 x 2 mm3 donor blocks. Each block contained approximately 16 pmol of [3H]IAA (equivalent to a concentration of 2 µM, of which typically less than 10% is taken up into the roots). Plant roots were cut 6 mm basipetal from the point of spot inoculation and then laid on a plate containing F medium with the basipetal end in contact with a donor block. The agar blocks were separated from the media by a strip of Parafilm, to prevent diffusion of the [3H]IAA through the agar. The plates were placed vertically in a box, covered with aluminum foil, and incubated at 25°C for 6 h. The roots were then cut into two 4 mm long segments, above and below the point of treatment, and the radioactivity in each segment was analyzed by scintillation counting as described above. For each experiment, 20 seedlings were used for each treatment.
Seedlings were grown as described above. Three-day-old seedlings were flood inoculated with S. meliloti, and 24 h later the root region (10 mm above and approximately 3 mm below the root tip mark at the time of inoculation) were harvested without the apical 2 mm of root tips. Plant total RNA was extracted using RNeasy plant mini kit (Qiagen) according to the manufacturer's instructions. RNA was treated in column with 10 units of RNase-free DNaseI (Invitrogen) at room temperature for 15 min. Following phenol and chloroform extractions and ethanol precipitation, the RNA was resuspended in 20 µL of water and quantified by measuring the A260. After adjusting samples for RNA content, cDNA was synthesized and amplified using the SuperScript one-step reverse transcriptase (RT)-PCR with Platinum Taq kit (Invitrogen) from 0.05% RNA following the manufacturer's instruction. PCRs were performed in a thermal cycler at 94°C for 2 min followed by a total of 30 cycles as follows: denaturation at 94°C for 30 s, annealing at 50°C for 30 s, and extension at 72°C for 1 min. The final extension was carried out at 72°C for 5 min. Primers used for MtPIN1 and MtPIN2 were according to Schnabel and Frugoli (2004)
IAA, IBA, 2,4-D, and NAA were purchased from Sigma. NPA was purchased from Casei. For stock solutions, 100 µmol IAA, IBA, 2,4-D, and NAA were dissolved in 1 mL of 50% ethanol. NPA was dissolved in 50% methanol. All hormone treatments, including solvent-only controls, received the final concentration of 0.002% ethanol or methanol in the medium. All stocks were filter sterilized and the appropriate amount of hormone was added to the agar before pouring the medium onto plates.
Statistical analysis was carried out with InStat, version 3.06 (Graphpad Software). All data were tested for normality before analysis. Two-way ANOVA was calculated with Genstat for Windows (version 4.2, fifth edition, Lawes Agricultural Trust).
We thank Douglas Cook for providing the skl mutant seeds, Julia Frugoli, Doug Cook, and Giel van Noorden for sharing unpublished or prepublication data, Flavia Pellerone for help with RT-PCR, and Prudy Hall, Peter Gresshoff, and Giel van Noorden for comments on the manuscript. Received March 6, 2006; accepted June 30, 2006.
1 This work was supported by funding from the Australian Research Council through the Australian Research Council Centre of Excellence for Integrative Legume Research (grant no. CE0348212) and an Australian Research Fellowship (grant no. DP0557692 to U.M.). The author responsible for distribution of materials integral to the findings presented in this article in accordance with the policy described in the Instructions for Authors (www.plantphysiol.org) is: Ulrike Mathesius (ulrike.mathesius{at}anu.edu.au).
[W] The online version of this article contains Web-only data. www.plantphysiol.org/cgi/doi/10.1104/pp.106.080093 * Corresponding author; e-mail ulrike.mathesius{at}anu.edu.au; fax 61261250313.
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