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First published online January 24, 2008; 10.1104/pp.107.111898 Plant Physiology 146:1440-1453 (2008) © 2008 American Society of Plant Biologists OPEN ACCESS ARTICLE
Metabolic Profiles of Lolium perenne Are Differentially Affected by Nitrogen Supply, Carbohydrate Content, and Fungal Endophyte Infection1,[W],[OA]AgResearch, Palmerston North 4442, New Zealand (S.R., A.J.P., K.F., H.X.); and Department of Environmental Biology, University of Guelph, Guelph, Ontario, Canada N1G 2W1 (J.A.N.)
Lolium perenne cultivars differing in their capacity to accumulate water soluble carbohydrates (WSCs) were infected with three strains of fungal Neotyphodium lolii endophytes or left uninfected. The endophyte strains differed in their alkaloid profiles. Plants were grown at two different levels of nitrogen (N) supply in a controlled environment. Metabolic profiles of blades were analyzed using a variety of analytical methods. A total of 66 response variables were subjected to a principle components analysis and factor rotation. The first three rotated factors (46% of the total variance) were subsequently analyzed by analysis of variance. At high N supply nitrogenous compounds, organic acids and lipids were increased; WSCs, chlorogenic acid (CGA), and fibers were decreased. The high-sugar cultivar AberDove had reduced levels of nitrate, most minor amino acids, sulfur, and fibers compared to the control cultivar Fennema, whereas WSCs, CGA, and methionine were increased. In plants infected with endophytes, nitrate, several amino acids, and, magnesium were decreased; WSCs, lipids, some organic acids, and CGA were increased. Regrowth of blades was stimulated at high N, and there was a significant endophyte x cultivar interaction on regrowth. Mannitol, a fungal specific sugar alcohol, was significantly correlated with fungal biomass. Our findings suggest that effects of endophytes on metabolic profiles of L. perenne can be considerable, depending on host plant characteristics and nutrient supply, and we propose that a shift in carbon/N ratios and in secondary metabolite production as seen in our study is likely to have impacts on herbivore responses.
Symbiotic plant-fungal interactions are of widespread interest to ecological research because they can influence important ecosystem processes, including plant productivity, plant diversity, and plant-herbivore interactions (Omacini et al., 2001
Neotyphodium spp. endophytes can confer a range of benefits to their grass hosts, mainly by producing specific alkaloids that deter feeding by herbivores (Bush et al., 1997
In a recent study (Rasmussen et al., 2007
It has been suggested that the integration of "-omics" technologies such as transcriptomics or metabolomics with traditional ecological research in the emerging research field of ecogenomics might help to understand the mechanistic basis for community processes and especially plant-pathogen and plant-herbivore interactions (Ouborg and Vriezen, 2007
Principal Components Analysis of Metabolite Responses
The analysis of 66 response variables (as measured in this study) presents a problem for the conventional "frequentist" approach to statistical analysis (Taper and Lele, 2004
Factor rotation is a method for rotating the principal component axes around the centroid. The centroid is the equivalent of the sample mean when the response has more than one dimension. Factor rotation can be understood as the multivaraiate equivalent of the univariate procedure of data transformation. Like transformations for univariate data, factor rotation serves two nonexclusive purposes. First, like univariate transformations, factor rotation is necessary when the multivariate normality assumption of the data is not met. Second, like some forms of univariate transformations (e.g. logarithms) factor rotation can aid in the interpretation of the principal component space. The effect of factor rotation is to redistribute some of the variance from earlier components to later components. We used the most common form of factor rotation, varimax rotation, which increases the magnitude of variables that load heavily (positively or negatively) onto an axis, and simultaneously, decreases the values of variables that do not load heavily onto an axis. In doing so, the varimax rotation yields a multivariate structure that is easier to understand because it increases the distinction between the large and small loading variables and so makes the biological interpretation of the axes simpler. For further discussion and references on factor rotation, the interested reader should see McGarigal et al. (2000)
We retained the first three rotated factors (RF-1, RF-2, and RF-3) for further analysis using standard ANOVA. The variable loadings for these three RFs are shown in Figure 1
. As the RFs increase, those variables that load heavily and positively (loading
Variables loading heavily and positively onto RF-2 include organic acids, in vitro organic matter digestibility (OMD; estimates total nutrients digestible by ruminants), metabolizable energy (ME; indicator of the energy that is available to ruminants for maintenance and growth), lipids, and DCAD. Variables loading heavily but negatively include two fatty acids (C17:0 and C18:0), one mineral (magnesium [Mg]), and neutral detergent fiber (NDF; estimates mainly cellulose, hemicellulose, and lignin content). Variables loading heavily and positively onto RF-3 are three fatty acids (C16:0, C16:1, and C18:3) and malate. Variables loading heavily but negatively onto this axis are acid detergent fiber (ADF; estimates mainly cellulose and lignin content) and NDF. Note that malate, DCAD, and NDF (denoted with arrows in Fig. 1) load heavily onto two axes, complicating the interpretation of these responses. This is because each of the univariate responses follows part of the response pattern for each of the multivariate response variables. Consequently, interpreting them within the context of the multivariate variables is difficult. Each of the three RF variables was subjected to a three-way ANOVA with N (low, high), cultivar (Fennema, AberDove), and endophyte (endophyte free [EF], CS, AR1, AR37) as the main effects and all two- and three-way interactions. Examination of the residuals suggests that the assumptions of homogeneity and normality were met without the need to further transform these variables. With 160 samples this design should have an error degrees of freedom (df) of 144. In all of the F tests shown below, the error df is 138 due to missing samples in one or more of the 66 metabolites used in the PCA and subsequent factor rotation.
Because some readers might feel uneasy with this type of multivariate approach we also present the results of an ANOVA of all (Box-Cox transformed) individual response variables as supplemental data (Supplemental Table S1). It should be noted that when these variables are analyzed as univariate response variables rather than as part of a principal component axis, some of them show significant interactions that are not readily apparent in the multivariate approach, e.g. LMW and HMW WSCs (Supplemental Table S1; Rasmussen et al., 2007
N (F1,138 = 257.01, P < 0.0001), cultivar (F1,138 = 46.01, P < 0.0001), and endophyte infection (F3,138 = 16.02, P < 0.0001) induced significant variation in the variables comprising RF-1. These three effects accounted for 71% of the total variance of RF-1. None of the interactions were significant. The mean responses of RF-1 and SEs of the means are plotted in Figure 2, A, C, and E . They can be interpreted as follows: Concentrations of variables with positive loadings were higher in high N than in low N; lower in AberDove than in Fennema; and lower in endophyte-infected plants than in EF plants The endophyte effect was strain dependent with AR1 showing the smallest and AR37 the largest effect. Concentrations of variables loading negatively onto RF-1 were lower in high N than in low N; higher in AberDove than in Fennema; and higher in endophyte-infected plants than in EF plants, again in a strain-dependent manner.
The standardized univariate responses of these variables are shown in Figure 2, B, D, and F, as support for the interpretation of the multivariate responses and to allow a closer inspection of those variables loading heavily onto RF-1 (i.e. loadings 0.5 and –0.5). Variable standardization allows direct comparison of the response magnitudes for variables with either very different concentrations, or variables with different units of measurement. As can be seen (Fig. 2B), the effect of high N supply was most prominent on major amino acids (L-Gln, L-Asp, L-Thr, L-Ala, L-Asn, L-Arg, L-Ser, L-Asn, and L-Glu), which represent 85% of the total free amino acid pool across all treatments (Supplemental Table S1). Nitrate, total N, and total protein were also considerably increased at high N supply and we note here that nitrate was increased almost 9-fold, whereas all other variables were increased less than 3.2-fold (based on untransformed data; see also Supplemental Table S2). The SD for nitrate was very high, resulting in relatively smaller differences when standardized. Minor amino acids (L-His, L-Gly, L-Ile, L-Leu, L-Tyr, L-Val, L-Pro, L-Lys, and L-Phe) were much less affected by increased N supply. L-Met was the only amino acid analyzed here that was not affected by N supply and did not load strongly onto any of the three RFs. All variables loading negatively onto RF-1 (loadings –0.5; carbohydrates and CGA) were decreased at high N supply (Fig. 2B).
Most variables (loadings on RF-1 Effects of endophyte infection on the magnitude of the standardized univariate responses was strongly strain dependent, with AR1 having the weakest and AR37 the strongest effect on most variables (Fig. 2F). Almost all amino acids were reduced in endophyte-infected plants, but this effect was most apparent for L-Asn and several minor amino acids. Carbohydrates and CGA were increased in infected plants, but the responses were much weaker for HMW WSCs and CGA.
N (F1,138 = 31.24, P < 0.0001), cultivar (F1,138 = 12.26, P < 0.0001), endophyte infection (F3,138 = 3.85, P < 0.05), and the cultivar by endophyte interaction (F3,138 = 4.13, P = 0.008) all induced significant variation in the variables comprising RF 2. These four effects accounted for 39% of the total variance of RF-2. None of the other interactions were significant. The mean responses and SEs of the means are plotted in Figure 3, A and C . Concentrations of variables with positive loadings were higher in high N than in low N; and higher in endophyte-infected Fennema plants than in EF Fennema, but in AberDove plants there was little variation in these variables. Concentrations of variables with negative loadings on RF-2 show the reverse pattern.
The standardized univariate responses of these variables are shown in Figure 3, B, D, and E, as support for the interpretation of the multivariate responses. The effect of high N supply was most prominent on malate, lipid, and DCAD (concentrations increased; Fig. 3B), and C17:0 and NDF (both decreased; Fig. 3B). The precursors of aromatic amino acids and phenylpropanoids (shikimate and quinate), OMD and ME were strongly increased in Fennema infected with endophyte (especially with AR37; Fig. 3D); this effect was much weaker in AberDove (Fig. 3E). Lipids and malate were increased by endophyte infection in both cultivars to the same degree. The two fatty acids (C17:0 and C18:0), NDF, and Mg were reduced in endophyte-infected plants, but the magnitude of that effect was dependent on the cultivar.
N (F1,138 = 36.82, P < 0.0001) and cultivar (F1,138 = 61.13, P < 0.0001), but not endophyte infection, induced significant variation in the variables loading onto RF-3. Together these two effects accounted for 42% of the total variation in RF-3. None of the interactions were significant. The mean responses and SEs of the means are plotted in Figure 4, A and C . Concentrations of variables with positive loadings were higher in high N than in low N (Fig. 4A), and higher in AberDove than in Fennema (Fig. 4C).
The standardized univariate responses of these variables are shown in Figure 4, B and D; malate and three fatty acids increased at high N compared to low N (Fig. 4B) and in AberDove compared to Fennema (Fig. 4D). The fiber components ADF and NDF decreased at high N (Fig. 4B) and were lower in AberDove (Fig. 4D).
N (F1,144 = 19.62, P < 0.0001), endophyte (F3,138 = 5.99, P < 0.001), and the endophyte by cultivar interaction (F3,138 = 3.34, P < 0.05), induced significant variation in the dry weight of blades regrown for 2 weeks (Fig. 5 ). High N supply did result in significantly more regrowth, as expected. There was no difference in regrowth between the two EF cultivars, but the endophytic strain AR37 stimulated regrowth more in AberDove compared to AR1-infected plants, and also compared to EF and CS-infected Fennema.
Mannitol
Previously (Rasmussen et al., 2007
In a previous article (Rasmussen et al., 2007
The effects of high N supply on metabolic profiles in ryegrass blades were most prominent on nitrogenous compounds, as expected. Nitrate levels in blades were approximately 9-fold higher in the high N treatment, indicating that nitrate uptake exceeded the plants' capacity for nitrate assimilation. Although 18 out of 19 analyzed amino acids were increased, there was a marked difference in the response of individual amino acids. Major amino acids, which represented approximately 85% of the total free amino acids, were much more affected than minor amino acids. This is in accordance with findings from a variety of crop plants, where mainly major amino acids responded to changes in carbon and N metabolism, whereas minor amino acids were not correlated with these changes and correlated more with each other than with total amino acid pools (Noctor et al., 2002
Because nitrate assimilation into amino acids requires reductants (10 electrons per molecule nitrate), energy (ATP), and carbon skeletons, this process is tightly linked with photosynthesis and carbon metabolism (Stitt et al., 2002
In a discussion of our previous findings that high N supply reduced endophyte concentrations, we hypothesized that this might be due to a dilution effect, i.e. plant growth is increased more than fungal growth under these conditions. This hypothesis is supported by the data set on yield presented here (Fig. 5A), as high N did result in significantly increased plant regrowth. However, other factors might have contributed to the reduction in endophytic concentrations. The best-studied endophytic fungi residing in plant parts are mycorrhizal fungi, for which it has been shown that up to 20% of carbon fixed by the host plant can be allocated to the fungus (Douds et al., 2000
As previously reported, endophyte alkaloids were reduced in infected plants grown at high N (Rasmussen et al., 2007
The high-sugar cultivar AberDove had, as reported earlier (Rasmussen et al., 2007
As stated above, endophyte concentrations were halved in the high-sugar cultivar, and as discussed previously (Rasmussen et al., 2007
Metabolic costs for host plants harboring foliar endophytes have been implied to be the cause of negative impacts on plant performance and growth seen especially in natural ecosystems or under severe resource limitations (Cheplick et al., 1989
A major effect of endophyte infection was an approximately 50% reduction in nitrate levels in the blades, which was accompanied by a reduction of several amino acids, total N, and total protein; such a reduction of nitrogenous compounds has been described earlier for N. coenophialum-infected tall fescue (Belesky and Fedders, 1996
Asn was the most reduced amino acid and L-Asn levels are mainly regulated by the carbon (C)/N status of plants. High levels of organic N and low levels of carbon skeletons result in high levels of L-Asn because this amino acid has a high N to C ratio and acts as an inert and stable N reserve (Lam et al., 1996
As pointed out, sugar levels were increased in endophyte-infected plants; it is possible that this increase is caused simply by reduced use of carbon skeletons for amino acids and proteins. We also found reduced levels of fibers in endophyte-infected plants, which could mean that more of the fixed carbon remains soluble and is not incorporated into cell walls. But higher sugar levels might also, at least partially, be a result of increased "sink strength" as seen in plants infected with mycorrhizal fungi (Wright et al., 1998
Although the organic acids citrate and succinate were decreased in endophyte-infected plants, malate was increased. It has been shown that malate plays a critical role in lipid biosynthesis in filamentous fungi, where it is irreversibly decarboxylated to pyruvate by malic enzyme with the formation of NADPH. Malic enzyme is suggested to be the major NADPH-generating enzyme required for providing reducing power for fatty acid synthase in Aspergillus nidulans and other lipid-storing fungi (Wynn and Ratledge, 1997
Shikimate and quinate, precursors for the aromatic amino acids L-Phe, L-Tyr, and L-Trp (Herrmann, 1995
Mannitol accumulated only in endophyte-infected N. lolii plants and was linearly correlated with fungal biomass. We have previously shown that the endophytic alkaloids peramine, lolitrem B, and janthitrems were highly correlated with fungal biomass as well (Rasmussen et al., 2007
We have shown that fungal endophyte infection significantly affects both primary and secondary metabolism of its host plant, clearly demonstrating the need for wider metabolic studies beyond alkaloid accumulation to understand ecosystem functions of this association. We have identified a range of biochemical responses and future molecular studies should focus on the dissection of the underlying mechanisms. Both, a shift in C to N ratios and in secondary metabolite production due to endophyte infection, are likely to have impacts on herbivore and plant pathogen responses to grasses infected with Neotyphodium spp. These impacts can be of an indirect nature linked to the nutritional value of plants and/or of a more direct nature linked to toxicity of secondary metabolites beyond fungal alkaloids. Our study also shows that metabolic traits of specific grass cultivars/populations and nutrient availability can be critical factors in determining metabolic and physiological outcomes of the grass-endophyte association and must therefore be taken into consideration for future experiments.
The fundamental design of the experiment was a three-way ANOVA comprising two grass cultivars, four endophyte treatments (three fungal strains and EF), and two concentrations of N supply.
Details of the experimental setup have been described previously (Rasmussen et al., 2007 Blades of all plants were cut 6 cm aboveground within 1 h on the same day, 7 h after the start of the daylight period, immediately frozen in liquid N, and subsequently freeze-dried. The material was stored at –20°C until further analysis.
Detailed information on instrumentation, derivatization procedures, and chromatographic conditions are provided as supplemental data.
Organic acids, sugar alcohols, and fatty acids were extracted, derivatized, and determined by GC-MS as described (Roessner et al., 2000
Free amino acids were derivatized with Waters AccQ-Tag (Millipore), separated by HPLC, and quantified by fluorescence detection (Excitation, 250 nm; Emission, 395 nm) as described (Reverter et al., 1997 CGA, flavonols, and anthocyanins were extracted with 1 mL of 80% methanol (0.1% acetic acid) using 50 mg of dried plant material, extracts were shaken at room temperature for 30 min, centrifuged (30 min, 13,000g), and the supernatant transferred into HPLC vials. Extracts were separated by HPLC and quantified using photodiode array detection based on calibration curves obtained from pure CGA and rutin. Anthocyanins were only analyzed as relative peak areas due to lack of appropriate standards. For details, see supplemental data.
LMW and HMW water soluble carbohydrates were extracted and quantified using anthrone as described (Hunt et al., 2005
Nitrate (NO3–) and phosphate (PO43–) were extracted at room temperature (shaking 1 h) with 50 mL of MilliQ water (Millipore) using 50 mg of plant material. Extracts were filtered through filter paper (2V; Whatman) and analyzed in a FIASTAR 5000 flow injection analyzer (Foss Tecator) following the manufacturer's instructions. Soluble proteins were extracted and determined as described (Bradford, 1976
Plant quality parameters were estimated using near-IR reflectance spectroscopy of finely powdered freeze-dried plant material as described (Corson et al., 1999
All statistical analyses were performed in JMP (version 7.0, SAS Institute, 2007). For the multivariate tests, we performed a PCA on the correlations among the 66 response variables. We then performed factor rotation on the first three axes using the Varimax method (Hair et al., 1998
The following materials are available in the online version of this article.
Received October 28, 2007; accepted January 17, 2008; published January 24, 2008.
1 This work was supported by the New Zealand Foundation of Research, Science and Technology (contracts C10X0203 and PROJ 10333–ECOS–AGR) and was conducted at AgResearch Grasslands, New Zealand. This work was also supported by grants from the Canadian Natural Sciences and Engineering Research Council (to J.A.N.) and the Ontario Ministry of Agriculture, Food and Rural Affairs (to J.A.N.). The author responsible for distribution of materials integral to the findings presented in this article in accordance with the policy described in the Instructions for Authors (www.plantphysiol.org) is: Susanne Rasmussen (susanne.rasmussen{at}agresearch.co.nz).
[W] The online version of this article contains Web-only data.
[OA] Open Access articles can be viewed online without a subscription. www.plantphysiol.org/cgi/doi/10.1104/pp.107.111898 * Corresponding author; e-mail susanne.rasmussen{at}agresearch.co.nz.
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