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Plant Physiology 147:939-953 (2008) © 2008 American Society of Plant Biologists Nutritionally Improved Agricultural CropsUniversity of California, Systemwide Biotechnology Research and Education Program, Davis, California 95616
Agricultural innovation has always involved new, science-based products and processes that have contributed reliable methods for increasing productivity and sustainability. Biotechnology has introduced a new dimension to such innovation, offering efficient and cost-effective means to produce a diverse array of novel, value-added products and tools. The first generation of biotechnology products commercialized were crops focusing largely on input agronomic traits whose value was largely opaque to consumers. The coming generations of crop plants can be grouped into four broad areas, each presenting what, on the surface, may appear as unique challenges to regulatory oversight. The present and future focus is on continuing improvement of agronomic traits such as yield and abiotic stress resistance in addition to the biotic stress tolerance of the present generation; crop plants as biomass feedstocks for biofuels and "biosynthetics"; value-added output traits such as improved nutrition and food functionality; and plants as production factories for therapeutics and industrial products. From a consumer perspective, the focus on value-added traits, especially improved nutrition, is of greatest interest. Developing plants with these improved traits involves overcoming a variety of technical, regulatory, and indeed perception challenges inherent in the perceived and real challenges of complex modifications. Both traditional plant breeding and biotechnology-based techniques are needed to produce plants with the desired quality traits. Continuing improvements in molecular and genomic technologies are contributing to the acceleration of product development. Table I presents examples of crops that have already been genetically modified with macronutrient and micronutrient traits that may provide benefits to consumers and domestic animals.
At a fundamental level, food is viewed as a source of nutrition to meet daily requirements at a minimum in order to survive but with an ever greater focus on the desire to thrive. In the latter instance, there is an ever-growing interest in the functionality of food. Functional foods have been defined as any modified food or food ingredient that may provide a health benefit beyond the traditional nutrients it contains. The term nutraceutical is defined as "any substance that may be considered a food or part of a food and provides health benefits, including the prevention and treatment of disease" (Goldberg, 1994
From the basic nutrition perspective, there is a clear dichotomy in demonstrated need between different regions and socioeconomic groups, the starkest being overconsumption in the developed world and undernourishment in less developed countries. Dramatic increases in the occurrence of obesity and related ailments in developed countries are in sharp contrast to the chronic malnutrition in many less developed countries. Both problems require a modified food supply, and the tools of biotechnology have a part to play. Worldwide, plant-based products comprise the vast majority of human food intake, irrespective of location or financial status (Mathers, 2006
While the correlative link between food and health is still open to debate, a growing body of evidence indicates that food components can influence physiological processes at all stages of life. Functional food components are of increasing interest in the prevention and/or treatment of at least four of the leading causes of death in the United States: cancer, diabetes, cardiovascular disease, and hypertension. The U.S. National Cancer Institute estimates that one in three cancer deaths are diet related and that eight of 10 cancers have a nutrition/diet component (Block et al., 1992
On the functionality side, there is a mirror component from the perspective of the genetic makeup of the individual doing the consuming. This field of personal response to nutrients is further divided into two thematic subsets with subtle differences. Nutrigenomics is the prospective analysis of differences among nutrients in the regulation of gene expression, while nutrigenetics is the analysis of genetic variations among individuals with respect to the interaction between diet and disease. These spheres of enquiry are designed to provide nutritional recommendations for personalized or individualized nutrition (Brigelius-Flohe and Joost, 2006 From a health perspective, plant components of dietary interest can be broadly divided into four main categories, the first two to be enhanced and the latter two to be limited or removed: macronutrients (proteins, carbohydrates, lipids [oils], fiber); micronutrients (vitamins, minerals, functional metabolites); antinutrients (substances such as phytate that limit the bioavailability of nutrients); and allergens (intolerances and toxins).
As noted, plants are a treasure trove of interesting and valuable compounds, since they must glean everything from the spot on earth where they are rooted and they cannot escape when threatened; therefore, they have evolved a most impressive panoply of products to thrive in ever-changing environments despite these limitations. It is estimated that plants produce up to 200,000 phytochemicals across their many and diverse members (Oksman-Caldenty and Inzé, 2004 Research to improve the nutritional quality of plants has historically been limited by a lack of basic knowledge of plant metabolism and the compounding challenge of resolving the complex interactions of thousands of metabolic pathways. Both traditional plant breeding and biotechnology techniques are needed to metabolically engineer plants with desired quality traits. Metabolic engineering is generally defined as the redirection of one or more enzymatic reactions to improve the production of existing compounds, produce new compounds, or mediate the degradation of undesirable compounds. It involves the redirection of cellular activities by the modification of the enzymatic, transport, and regulatory functions of the cell. Significant progress has been made in recent years in the molecular dissection of many plant pathways and in the use of cloned genes to engineer plant metabolism.
With the tools now being harnessed through the many "omics" and "informatics" fields, there is the potential to identify genes of value across species, phyla, and kingdoms. Through advances in proteomics and glycomics, we are beginning to quantify simultaneously the levels of many individual proteins and to follow posttranslational alterations that occur in pathways. Ever more sophisticated metabolomic tools and analysis systems allow the study of both primary and secondary metabolic pathways in an integrated fashion (Hall et al., 2008
Although progress in dissecting metabolic pathways and our ability to manipulate gene expression in genetically modified (GM) plants has progressed apace, attempts to use these tools to engineer plant metabolism have not quite kept pace. Since the success of this approach hinges on the ability to change host metabolism, its continued development will depend critically on a far more sophisticated knowledge of plant metabolism, especially the nuances of interconnected cellular networks, than currently exists. This complex interconnectivity is regularly demonstrated. Relatively minor genomic changes (point mutations, single gene insertions) are regularly observed following metabolomic analysis, leading to significant changes in biochemical composition (Bino et al., 2005
Likewise, there are unexpected outcomes, such as the fact that significant modifications made to primary Calvin cycle enzymes (Fru-1,6-bisphosphatase and phosphoribulokinase) have little effect while modifications to minor enzymes (e.g. aldase, which catalyzes a reversible reaction) seemingly irrelevant to pathway flux have major effects (Hajirezaei et al., 1994
One potential approach to counter some of the complex problems in the metabolic engineering of pathways involves the manipulation of Tfs that control networks of metabolism (Kinney and Knowlton, 1998
As a corollary to these techniques, there are several new technologies that can overcome the limitation of single gene transfers and facilitate the concomitant transfer of multiple components of metabolic pathways. One example is multiple transgene direct DNA transfer, which simultaneously introduces all of the components required for the expression of complex recombinant macromolecules into the plant genome, as demonstrated by Nicholson et al. (2005)
The agronomically improved GM crops now being grown on more than 114 million ha around the world are products of the application of these technologies to crop plants (James, 2008
To summarize, omics-based strategies for gene and metabolite discovery, coupled with high-throughput transformation processes and automated analytical and functionality assays, have accelerated the identification of product candidates. Identifying rate-limiting steps in synthesis could provide targets for genetically engineering biochemical pathways to produce augmented amounts of compounds and new compounds. Targeted expression will be used to channel metabolic flow into new pathways, while gene-silencing tools can reduce or eliminate undesirable compounds or traits or switch off genes to increase desirable products (Liu et al., 2002
Protein
Protein energy malnutrition is the most lethal form (Food and Agriculture Organization, 2006) of malnutrition and affects every fourth child worldwide, according to the World Health Organization (2006
Another method of modifying storage protein composition is to introduce heterologous or homologous genes that code for proteins containing elevated levels of the desired amino acid, such as sulfur-containing Met and Cys or Lys. An interesting solution to this is to create a completely artificial protein containing the maximum number of the essential amino acids Met, Thr, Lys, and Leu in a stable, helical conformation designed to resist proteases to prevent degradation. This was done by Beauregard et al. (1995)
Young et al. (2004)
As the somewhat disputed notion of a glycemic index has supplanted Atkins as the indicator of choice when addressing carbohydrates in the diet, it has become clear to the public that not all carbohydrates are created equal. While it is still something of a value judgment to describe "good" versus "bad" carbohydrates, there are clear clinical indications of the value of polymeric versus simple sugars. Plants are effective at making both polymeric carbohydrates (e.g. starches and fructans) and individual sugars (e.g. Suc and Fru). The biosynthesis of these compounds is sufficiently understood to allow the bioengineering of their properties or to engineer crops to produce polysaccharides not normally present.
Fructans are an important ingredient in functional foods because evidence suggests that they promote a healthy colon (as a prebiotic agent) and help reduce the incidence of colon cancer. Sévenier et al. (1998)
The amylose-amylopectin ratio has the greatest influence on the physicochemical properties of the starch, and for many applications it is desirable to have a pure or enriched fraction of either amylopectin or amylose. Schwall et al. (2000)
Fiber is a group of substances chemically similar to carbohydrates, but nonruminant animals including humans poorly metabolize fiber for energy or other nutritional uses. Fiber is only found in foods derived from plants and never occurs in animal products. Fiber provides bulk in the diet, such that foods rich in fiber offer satiety without contributing significant calories. Current controversies aside, there is ample scientific evidence to show that prolonged intake of dietary fiber has various positive health benefits, especially the potential for reduced risk of colon and other types of cancer. Fiber type and quantity are undoubtedly under genetic control, although this topic has been little studied. The technology to manipulate fiber content and type by genetic engineering would be a great benefit to the health status of many individuals who refuse, for taste or other reasons, to include adequate amounts of fiber in their daily diet. For example, fiber content could be added to more preferred foods or the more common sources of dietary fiber could be altered for greater health benefits.
Nonruminant animals do not produce enzymes necessary to digest cellulose-based plant fiber. Plants low in fiber should yield more digestible and metabolizable energy and protein and less manure and methane when fed to monogastric species (North Carolina Cooperative Extension Service, 2000). Vermerris and Bout (2003)
Gene technology and plant breeding are combining to provide powerful means for modifying the composition of oilseeds to improve their nutritional value and provide the functional properties required for various food oil applications. Genetic modification of oilseed crops can provide an abundant, relatively inexpensive source of dietary fatty acids with wide-ranging health benefits. Production of such lipids in vegetable oil provides a convenient mechanism to deliver healthier products to consumers without the requirement for significant dietary changes. Major alterations in the proportions of individual fatty acids have been achieved in a range of oilseeds using conventional selection, induced mutation, and, more recently, posttranscriptional gene silencing. Examples of such modified oils include low- and zero-saturated fat soybean and canola oils, canola oil containing medium-chain fatty acids, high-stearic acid canola oil (for trans-fatty acid-free products), high-oleic acid (monounsaturated) soybean oil, and canola oil containing the polyunsaturated fatty acids
Medium chain fatty acids range from 6 to 10 carbons long and are only minor components of natural foods, with the exception of coconut and palm kernel oils. When medium-chain triglycerides (MCTs) are substituted for long-chain triglycerides (LCTs) in the diet, animals gain less weight, store less adipose tissue, and experience an increase in metabolic rate (Baba et al., 1982
Edible oils rich in monounsaturated fatty acids provide improved oil stability, flavor, and nutrition for human and animal consumption. Oleic acid (18:1), a monounsaturate, can provide more stability than the polyunsaturates linoleic acid (18:2) and linolenic acid (18:3). From a health aspect, the monounsaturates are also preferred. Antisense inhibition of oleate desaturase expression in soybean resulted in oil that contained more than 80% oleic acid (23% is normal) and had a significant decrease in polyunsaturated fatty acids (Kinney and Knowlton, 1998
A key function of
However, not all
Structural lipids also have positive health benefits; for example, in addition to their effect in lowering cholesterol, membrane lipid phytosterols have been found to inhibit the proliferation of cancer cells by inducing apoptosis and G1/S cell cycle arrest through the 3-hydroxy-3-methylglutaryl-CoA reductase target mentioned previously (Awad and Fink, 2000
Micronutrient malnutrition, the so-called hidden hunger, affects more than half of the world's population, especially women and preschool children in developing countries (United Nations System Standing Committee on Nutrition, 2004
Using various approaches, vitamin E levels are being increased in several crops, including soybean, maize, and canola, while rice varieties are being developed with the enhanced vitamin A precursor, β-carotene, to address vitamin A deficiency that leads to macular degeneration and affects development. Ameliorating another major deficiency in less developed countries, minerals such as iron and zinc have also been addressed. Other targets include improved iron content, ferritin-rich lettuce (Lactuca sativa), bioavailable phosphorus, and divalent ions released from phytate, folate-enriched tomatoes, and isoflavonoids (DellaPenna, 2007
As with macronutrients, one way to ensure an adequate dietary intake of nutritionally beneficial phytochemicals is to adjust their levels in plant foods. Until recently, such work had been hindered by the difficulty of isolating the relevant genes (e.g. for vitamin biosynthesis). However, the advent of genomics during the past few years has provided new routes for such work. Using nutritional genomics, DellaPenna (Shintani and DellaPenna, 1998
Rice is a staple that feeds nearly half the world's population, but milled rice does not contain any β-carotene or its carotenoid precursors. Integrating observations from prokaryotic systems into their work enabled researchers to clone the majority of carotenoid biosynthetic enzymes from plants during the 1990s. Taking advantage of this, Golden rice, with β-carotene expression in the endosperm, was created (Ye et al., 2000
Iron is the most commonly deficient micronutrient in the human diet, and iron deficiency affects an estimated 1 to 2 billion people. Anemia, characterized by low hemoglobin, is the most widely recognized symptom of iron deficiency, but there are other serious problems, such as impaired learning ability in children, increased susceptibility to infection, and reduced work capacity. A research group led by Goto et al. (2000)
Unlike for vitamins and minerals, the primary evidence for the health-promoting roles of phytochemicals comes from epidemiological studies, and the exact chemical identities of many active compounds have yet to be determined. However, for select groups of phytochemicals, such as nonprovitamin A, carotenoids, glucosinolates, and phytoestrogens, the active compound or compounds have been identified and rigorously studied. A great irony of nature is that the body's natural metabolism involving oxygen also produces a host of toxic compounds called "free radicals." These compounds can harm body cells by altering molecules of protein and fat and by damaging DNA. Antioxidants counteract, or neutralize, the harmful effects of free radicals.
Epidemiologic studies have suggested a potential benefit of the carotenoid lycopene in reducing the risk of prostate cancer, particularly the more lethal forms of this cancer. Five studies support a 30% to 40% reduction in risk associated with high tomato or lycopene consumption in the processed form in conjunction with lipid consumption, although other studies with raw tomatoes were not conclusive (Giovinazzo et al., 2005
Stilbenes, including resveratrol (3,5,4'-trihydroxystilbene), are phenolic natural products that accumulate in a wide range of plant species, including pine (Pinus spp.), peanut (Arachis hypogaea), rhubarb (Rheum spp.), and grape (Vitis vinifera; Tropf et al., 1994 Other phytochemicals of interest include the flavonoids, such as tomatoes expressing chalcone isomerase, which show increased contents of the flavanols rutin and kaempferol glycoside; glucosinolates and their related products, such as indole-3 carbinol; catechin and catechol; isoflavones, such as genistein and daidzein; anthocyanins; and some phytoalexins (Table I). A comprehensive list of phytochemicals is outlined in Table II. Although there is a growing knowledge base indicating that elevated intakes of specific phytochemicals may reduce the risk of disease, such as certain cancers, cardiovascular diseases, and chronic degenerative diseases associated with aging, further research and epidemiological studies are still required to prove definitive relationships.
Plants produce many defense strategies to protect themselves from predators, and many of these, such as resveratrol and glucosinate, which are primarily pathogen-protective chemicals, also have demonstrated beneficial effects for human and animal health. Many, however, have the opposite effect. For example, phytate, a plant phosphate storage compound, is an antinutrient, as it strongly chelates iron, calcium, zinc, and other divalent mineral ions, making them unavailable for uptake. Nonruminant animals generally lack the phytase enzyme needed for digestion of phytate. Poultry and swine producers add processed phosphate to their feed rations to counter this. Excess phosphate is excreted into the environment, resulting in water pollution. When low-phytate soybean meal is utilized along with low-phytate maize for animal feeds, the phosphate excretion in swine and poultry manure is halved. A number of groups have added heat- and acid-stable phytase from Aspergillus fumigatus to make the phosphate and liberated ions bioavailable in several crops (Lucca et al., 2002
Other antinutrients that are being examined as possible targets for reduction are trypsin inhibitors, lectins, and several other heat-stable components found in soybeans and other crops. Likewise, strategies are being applied to reduce or limit food allergens (albumins, globulins, etc.), malabsorption and food intolerances (gluten), and toxins (glycoalkaloids, cyanogenic glucosides, phytohemagglutinins) in crop plants and undesirable aesthetics such as caffeine (Ogita et al., 2003
Biotechnology approaches can be employed to down-regulate or even eliminate the genes involved in the metabolic pathways for the production, accumulation, and/or activation of these toxins in plants. For example, the solanine content of potato has already been reduced substantially using an antisense approach, and efforts are under way to reduce the level of the other major potato glycoalkaloid, chaconine (McCue et al., 2003
On the surface, it may appear that the greater complexity involved in modifying the nutritional content of crop plants would necessitate more rigorous oversight than the simpler modifications. However, extensive research reported previously (International Life Sciences Institute, 2004a
At a very fundamental level, a recent report (Baack and Rieseberg, 2007
Research to improve the nutritional quality of plants has historically been limited by a lack of basic knowledge of plant metabolism and the almost insurmountable challenge of resolving complex branches of thousands of metabolic pathways. With the tools now available to us through the fields of genomics and bioinformatics, we have the potential to fish in silico for genes of value across species, phyla, and kingdoms and subsequently to study the expression and interaction of transgenes on tens of thousands of endogenous genes simultaneously. With advances in proteomics, we should also be able to simultaneously quantify the levels and interactions of many proteins or follow posttranslational alterations that occur. With these newly evolving tools, we are beginning to get a handle on the global effects of metabolic engineering on metabolites, enzyme activities, and fluxes. Right now, for essential macronutrients and micronutrients that are limiting in various regional diets, the strategies for improvement are clear and the concerns, such as pleiotropic effects and safe upper limits, are easily addressed. However, for many other health-promoting phytochemicals, clear links with health benefits remain to be demonstrated. Such links, if established, will make it possible to identify the precise compound or compounds to target and which crops to modify to achieve the greatest nutritional impact and health benefits. The achievement of this aim will be a truly interdisciplinary effort, requiring expertise and input from many disparate fields, ranging from the obvious human physiology and plant research to the less obvious "omics" and analytic fields. With these emerging capabilities, the increase in our basic understanding of plant secondary metabolism during the coming decades will be unparalleled and will place plant researchers in the position of being able to modify the nutritional content of major and minor crops to improve many aspects of human and animal health and well-being.
We thank Cathy Miller (University of California, Systemwide Biotechnology Research and Education Program) for extensive proofreading and invaluable suggestions on improving the manuscript. Received April 24, 2008; accepted May 29, 2008; published July 8, 2008.
The author responsible for distribution of materials integral to the findings presented in this article in accordance with the policy described in the Instructions for Authors (www.plantphysiol.org) is: Martina Newell-McGloughlin (mmmcgloughlin{at}ucdavis.edu). www.plantphysiol.org/cgi/doi/10.1104/pp.108.121947 * E-mail mmmcgloughlin{at}ucdavis.edu.
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