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First published online March 14, 2008; 10.1104/pp.108.116863 Plant Physiology 147:1590-1602 (2008) © 2008 American Society of Plant Biologists OPEN ACCESS ARTICLE
Comparison of the Dynamics and Functional Redundancy of the Arabidopsis Dynamin-Related Isoforms DRP1A and DRP1C during Plant Development1,[W],[OA]Program in Cellular and Molecular Biology and Department of Biochemistry, University of Wisconsin, Madison, Wisconsin 53706
Members of the Arabidopsis (Arabidopsis thaliana) DYNAMIN-RELATED PROTEIN1 (DRP1) family are required for cytokinesis and cell expansion. Two isoforms, DRP1A and DRP1C, are required for plasma membrane maintenance during stigmatic papillae expansion and pollen development, respectively. It is unknown whether the DRP1s function interchangeably or if they have distinct roles during cell division and expansion. DRP1C was previously shown to form dynamic foci in the cell cortex, which colocalize with part of the clathrin endocytic machinery in plants. DRP1A localizes to the plasma membrane, but its cortical organization and dynamics have not been determined. Using dual color labeling with live cell imaging techniques, we showed that DRP1A also forms discreet dynamic foci in the epidermal cell cortex. Although the foci overlap with those formed by DRP1C and clathrin light chain, there are clear differences in behavior and response to pharmacological inhibitors between DRP1A and DRP1C foci. Possible functional or regulatory differences between DRP1A and DRP1C were supported by the failure of DRP1C to functionally compensate for the absence of DRP1A. Our studies indicated that the DRP1 isoforms function or are regulated differently during cell expansion.
Dynamin and dynamin-related proteins (DRPs) constitute a structurally similar, yet functionally distinct, protein superfamily of GTPases found in all eukaryotes. A common feature of dynamin and DRPs is their ability to homo-oligomerize around lipid bilayers and modulate membrane structure (Praefcke and McMahon, 2004
The plant-specific dynamin family (DRP1) is common to many plant species, including the model systems Arabidopsis (Arabidopsis thaliana), rice (Oryza sativa), and soybean (Glycine max), but has unknown molecular functions. The Arabidopsis DRP1 family is required during cytokinesis at the cell plate and during rapid cell expansion at the plasma membrane (Kang et al., 2001
The DRP1s share 65% to 84% amino acid sequence identity, which is most dissimilar throughout a 15- to 24-amino acid stretch between the middle domain and GTPase effector domain. Interestingly, the lipid-interacting pleckstrin homology domain of MAMMALIAN DYNAMIN1 is also positioned between the middle domain and the GTPase effector domain. By homology to known structures of dynamin (Zhang and Hinshaw, 2001
drp1A, drp1C, and drp1E mutants have been isolated and characterized (Kang et al., 2001
In contrast, drp1C-1 mutants exhibit male gametophytic lethality. drp1C-1 pollen are small, shriveled, and do not germinate (Kang et al., 2003b
The Arabidopsis genome has undergone duplication events throughout its evolution, leading to gene families (Arabidopsis Genome Initiative, 2000
DRP1A and DRP1C Are Conserved in Rice and Legumes
Using BLASTP database searches of the published rice and Medicago truncatula genomes, DRPs were identified in these species by the presence of the large GTPase domain (approximately 300 amino acids) conserved in all DRPs (SMART domain SM00053), and compared to the DRPs in Arabidopsis (Hong et al., 2003a
DRP1A-GFP Forms Discrete Foci at the Plasma Membrane
The dynamics of DRP1C at the plasma membrane and its organization into discrete mobile foci have been described previously (C.A. Konopka and S.Y. Bednarek, unpublished data). To determine the cortical localization and dynamics of DRP1A, seedling roots expressing a functional DRP1A-GFP fusion protein under the control of the DRP1A promoter (Kang et al., 2003a
The DRP1A-GFP foci displayed various mobile behaviors both in the focal plane of the cell cortex and further within the cell. Approximately 50% of DRP1A foci (n = 175) were observed moving in the cytoplasm (not in the focal plane) for one to two frames prior to becoming immobile at the cell cortex. Approximately 23% of the foci moved within the imaging plane during their lifetime, establishing a new immobile position before disappearing from the cortex (Fig. 2, B and C, yellow and blue arrowheads). DRP1A-GFP foci movements in the imaging plane made it difficult to track some foci, so it is possible that the average foci lifetime was underestimated. One striking difference between DRP1C-GFP and DRP1A-GFP (as well as between DRP1A-mOrange and DRP1C-mOrange, see below) was the rate of photobleaching. The estimated t0.5 of photobleaching was 20 min for DRP1C-GFP. In contrast, during the first 1.5 min of imaging DRP1A-GFP, the photobleaching t0.5 was approximately 2 min using identical optical parameters. After 1.5 min, the photobleaching rate decreased to that observed for DRP1C. The DRP1A-GFP foci that appeared in the cell cortex after 1.5 min of imaging exhibited a photobleaching t0.5 similar to DRP1C foci.
DRP1C-GFP foci dynamics are disrupted with pharmacological inhibitors of membrane sterol composition (10 µg/mL fenpropimorph; He et al., 2003 DRP1A-GFP dynamics were not disrupted when seedlings were treated with oryzalin or latB alone under conditions that caused complete depolymerization of the microtubule or actin cytoskeleton, respectively (Fig. 2E). The average lifetime of DRP1A-GFP foci when treated with 0.1% dimethyl sulfoxide (DMSO; control) was 25.0 ± 10.4 s and increased to 28.3 ± 17.9 s upon microtubule depolymerization. In addition, the cortical lateral movements of DRP1A foci described above were unaffected after oryzalin treatment. Likewise, neither focus lifetime (31.0 ± 15.9 s) nor lateral movements within the cell cortex were significantly altered upon F-actin depolymerization (P > 0.001). When both cytoskeletal arrays were depolymerized, the average focus lifetime was nearly 1.5 times that of the control (37.0 ± 19.3 s), which was statistically significant (P < 0.001), but the percentage of laterally mobile foci was unchanged, indicating that the foci were not propelled by cytoskeletal associated forces. The AP2 inhibitor tyrA23 causes rapid immobilization of DRP1C-GFP foci and concentration of DRP1C-GFP fluorescence in large unknown structures at the cell cortex and in the cytoplasm as previously shown (C.A. Konopka and S.Y. Bednarek, unpublished data). When seedlings expressing DRP1A-GFP were treated with tyrA23, the cytoplasmic pool of DRP1A-GFP fluorescence was unchanged and DRP1A-GFP foci did not increase in size or fluorescence intensity, like DRP1C foci. However, DRP1A-GFP foci became less dynamic at the cell cortex. After 30 min, 97% of foci did not cycle in or out of the cell cortex and an average lifetime could not be determined. As upon cytoskeletal inhibition with latB and oryzalin, the cortical lateral movements of DRP1A-GFP foci within the cell cortex were unaffected by tyrA23 when compared to DMSO-treated seedlings. To assess the requirement for specific sterols in DRP1A-GFP dynamics, seedlings were grown on 10 µg/µL fenpropimorph, an inhibitor of the sterol biosynthetic pathway in plants. DRP1A-GFP foci in root epidermal cells from plants grown on fenpropimorph had a higher residence time than foci in seedlings grown on one-half-strength Murashige and Skoog (Fig. 2D; Supplemental Video S2). An average lifetime could not be determined, but 56% of foci analyzed remained at the cell cortex longer than 2 min. In addition, the foci did not display the characteristic movements in the cell cortex that occurred in approximately 20% of foci in untreated roots. Finally, the photobleaching that affected the DRP1A-GFP fluorophore when seedlings were grown on one-half-strength Murashige and Skoog was absent when seedlings were grown in the presence of fenpropimorph. Collectively, the response of DRP1A-GFP foci to various inhibitors differed from the response of DRP1C-GFP foci, suggesting that DRP1A was regulated differently than DRP1C at the cell cortex.
Previous studies have shown that DRP1C colocalizes with and resides on the same structures as CLC in the cell cortex (C.A. Konopka and S.Y. Bednarek, unpublished data). DRP1A-GFP and DRP1C-GFP both organize into foci with different behaviors and responses to various inhibitors. To determine whether DRP1A and DRP1C also colocalize in the cell cortex, an mOrange-tagged (Shaner et al., 2004
To determine whether DRP1A-mOrange foci colocalized with clathrin and DRP1C at the cell cortex, drp1A-2:DRP1A-mOrange plants were crossed with drp1C-1:DRP1C-GFP and WS:CLC-GFP plants, and the F2 progeny used for analysis. Root epidermal cells from nine independent seedlings were imaged with dual color VAEM imaging (Fig. 3; Supplemental Video S3). Approximately 87% of DRP1A-mOrange foci overlapped with fluorescence from DRP1C-GFP foci. Conversely, 80% of DRP1C-GFP foci overlapped with fluorescence from DRP1A-mOrange foci (Fig. 3A). Overall, fluorescence from DRP1C-GFP and DRP1A-mOrange overlapped in 72% of foci imaged. To rule out the possibility that the fluorescence overlap was random due to the high density of both foci, the red channel images from six different cells were rotated 180 degrees with respect to the green channel, an analysis technique that has been used previously to show nonrandom colocalization (Delcroix et al., 2003 To examine cortical DRP1A and DRP1C dynamics, the fluorescence intensity profiles for DRP1C-GFP and DRP1A-mOrange were determined for foci in which both DRP1A and DRP1C were present. Examples of the intensity profiles are shown in Figure 3. Forty-seven percent of foci examined showed simultaneous disappearance of DRP1C-GFP and DRP1A-mOrange from the image plane (Fig. 3B), suggesting they were present on the same structure. Of these, the majority had a concurrent increase in fluorescence of both fluorophores (33% of all foci). Other foci had an initial mOrange fluorescence (3%) or GFP fluorescence (5%) increase. Another population of foci (6%) maintained a constant fluorescence of one DRP1-FFP throughout their lifetime, while fluorescence of the other DRP1-FFP fluctuated (Fig. 3C). In contrast, a majority of all foci examined did not exhibit simultaneous disappearance of both fluorophores. These either had coordinated appearance of both fluorophores (28%; Fig. 3D) or no coordination of their entrance or departure (26%; Fig. 3E). Like DRP1A-GFP, a small fraction of DRP1A-mOrange foci were also mobile in the cell cortex between periods of immobility. This population of DRP1A-mOrange foci associated with DRP1C-GFP foci when immobile, but rarely while in transit. From these colocalization and dynamics analyses, it appears that DRP1A and DRP1C can exist on the same structures, but also may function independently at the cell cortex.
DRP1C and CLC colocalize in the cell cortex where they have coordinated dynamics (C.A. Konopka and S.Y. Bednarek, unpublished data). Based on the colocalization of DRP1A and DRP1C foci, it is expected that the foci formed by DRP1A and CLC would colocalize. Indeed, this was the case (Fig. 4A ; Supplemental Video S4). A total of 80.3% of DRP1A-mOrange foci had overlapping CLC-GFP fluorescence during their lifetime (n = 600). Conversely, 72.8% of CLC-GFP foci had overlapping fluorescence from DRP1A-mOrange foci during their lifetime. In total, 60.8% of foci imaged in root epidermal cells expressing DRP1A-mOrange and CLC-GFP contained both fluorescent fusion proteins. Intensity profiles for 36 foci that contained both DRP1A-mOrange and CLC-GFP fluorescence were analyzed. Like with colocalizing DRP1A and DRP1C foci, fewer than half (39%) of the foci had simultaneous disappearance of both DRP1A-mOrange and CLC-GFP (Fig. 4B). Only 14% had simultaneous recruitment and disappearance of the DRP1-FFPs (Fig. 4C). Forty-four percent of foci displayed uncoordinated dynamics of the fluorescence intensity (Fig. 4D). In summary, a majority of DRP1A foci colocalized with DRP1C and CLC structures, but had distinct dynamics from DRP1C and CLC. This suggested that DRP1A could associate with the clathrin machinery, but may also act independently from clathrin-coated structures at the cell cortex.
DRP1C Can Functionally Compensate for DRP1A during Seedling Development
DRP1A and DRP1C have different dynamics at the cell cortex in expanding root epidermal cells, suggesting that the two DRP1 isoforms may have distinct roles. To determine if DRP1C and DRP1A are functionally redundant, we examined if expression of DRP1C under the control of the DRP1A promoter or constitutive expression using the viral promoter cauliflower mosaic virus 35S (35S) could complement the various phenotypes observed in drp1A-2 mutants. drp1A-2 plants are characterized by: (1) seedling lethality on soft agar (0.6% phytagar) plates, which can be rescued by supplementation with 1% Suc (Kang et al., 2001
drp1A-2 plants expressing the following constructs were generated: DRP1A promoter:DRP1A cDNA C-terminal myc fusion protein (ApA-myc), DRP1A promoter:DRP1C cDNA C-terminal myc fusion protein (ApC-myc), 35S promoter:DRP1A cDNA C-terminal GFP fusion (35pA-GFP), or 35S promoter:DRP1C cDNA C-terminal GFP fusion (35pC-GFP; Fig. 5A
). Protein expression of the transgenes were comparable across all lines as verified using DRP1A-specific antibodies (Kang et al., 2001
Nine (ApA-myc and ApC-myc), seven (35pA-GFP), and four (35pC-GFP) independent lines were evaluated for growth on one-half-strength Murashige and Skoog + 0.6% phytagar without Suc. Wild-type plants expressing any of the constructs did not display any morphological or developmental defects (data not shown). A total of 93.3% of wild-type seedlings and 4% of drp1A-2 seedlings produced at least one pair of true leaves and survived when transferred to soil. The survival rate of seedlings from three representative lines for ApA-myc and ApC-myc and two representative lines for 35pA-GFP and 35pC-GFP is shown in Figure 5C. A total of 88.7% ± 6.8% and 59% ± 18.1% of drp1A-2 seedlings expressing ApA-myc or ApC-myc, respectively, developed normally without Suc. Although the lower survival rate of drp1A-2:ApC-myc plants was statistically significant versus the control, drp1A-2:ApA-myc, the drp1A-2:35pC-GFP lines did not have significantly lower survival rates than the control drp1A-2:35pA-GFP lines (80.3% ± 27.2% for 35p1C-GFP versus 83.5% ± 7.9% for 35pA-GFP). These data indicate that DRP1C can functionally compensate for the lack of DRP1A during seedling development, suggesting at least a partial functional redundancy of DRP1C with DRP1A.
The same transgenic lines expressing ApA-myc, ApC-myc, 35pA-GFP, or 35pC-GFP described above were evaluated for fertility and stigmatic papillae expansion. drp1A-2 homozygous plants have reduced fertility, most likely due to the failure of the stigmatic papillae to expand just prior to pollination (Kang et al., 2003a
To confirm that the reduced fertility of drp1A-2:ApC-myc and drp1A-2:35pC-GFP plants was due to abnormal papillae expansion as in the drp1A-2 mutant, flowers from untransformed wild-type, drp1A-2, drp1A-2:ApA-myc, drp1A-2:ApC-myc, drp1A-2:35pA-GFP, and drp1A-2:35pC-GFP plants were imaged by environmental scanning electron microscopy (Fig. 6E). Stage 13 or 14 flowers were chosen to ensure that dehiscence of the pollen and papillae expansion had occurred. Papillae from wild-type flowers were elongated and flask shaped, whereas papillae from drp1A-2 flowers were small and balloon shaped, as previously described (Kang et al., 2003a
The plant-specific DRP1 family is essential for cytokinesis, venation, trichome development, and cell expansion (Kang et al., 2001
A common feature of dynamin and DRPs is their ability to oligomerize around lipid bilayers and deform membranes (Praefcke and McMahon, 2004
Despite these differences, DRP1C-GFP and DRP1A-GFP foci had a high coincidence of overlap, indicating that at least a subset of DRP1A functioned in the same pathway as DRP1C. The percentage of colocalization and coincidental dynamics of DRP1A with either DRP1C or CLC was lower than that of DRP1C with CLC (Figs. 3 and 4; C.A. Konopka and S.Y. Bednarek, unpublished data). This suggests that DRP1A, DRP1C, and CLC are part of the same clathrin machinery in the approximately 25% of foci that exhibited coordinated dynamics of the three proteins, whereas in the other 75% of foci, DRP1A was acting independently of DRP1C and CLC. A putative role for DRP1A or DRP1C in CME correlates with the phenotype of drp1A-2 and drp1C-1 mutants. Defects in dynamin-dependent endocytic pathways have been previously shown to cause large plasma membrane invaginations in flies (Kessell et al., 1989
Distinct populations of cortical-associated DRP1A were observed. As described above, one population of DRP1A foci exhibited similar dynamics to DRP1C. However, 35% of DRP1A-GFP foci have longer lifetimes than 48 s, which is the longest recorded lifetime of DRP1C foci in untreated cells (Fig. 2; C.A. Konopka and S.Y. Bednarek, unpublished data). In addition, 25% of DRP1A-GFP foci move laterally within the cell cortex at least once before disappearing entirely, which was not observed with DRP1C. It is not clear whether or not these two populations (longer lifetime and mobile) represent the same population, because the difference in residence time between mobile and nonmobile populations was not significant.
A majority of DRP1A-FFP foci that were present at the start of imaging were photobleached within the first 2 min. Subsequently, new foci appeared in the cell cortex after 2 min that did not photobleach. It is possible that the DRP1A population that was not vulnerable to photobleaching was localized in a chemically distinct environment. Interestingly, this rapid photobleaching was not apparent when plants were grown in the presence of the sterol synthesis inhibitor, fenpropimorph. Plants grown on fenpropimorph have a modified sterol profile (Schrick et al., 2004
Disrupting sterol synthesis in plants causes defects in cytokinesis, cell expansion, cell polarity, and cell wall formation (He et al., 2003
The gametophytic lethality of the drp1C-1 mutant has prohibited the generation of double or triple DRP1 mutants as a means to determine functional redundancy with DRP1C. To bypass this, we expressed DRP1A and DRP1C under the control of the native DRP1A promoter or constitutive 35S promoter and assayed their ability to complement drp1A-2 phenotypes. The drp1A-2 mutant has a well-characterized defect in papillae expansion (Kang et al., 2003a
Live cell imaging and genetic complementation have demonstrated that although exogenously expressed DRP1C can compensate for the absence of DRP1A during seedling development, the DRP1 isoforms are not completely functionally redundant and display distinct dynamics. Whether these dissimilarities in dynamics account for the inability of DRP1C to complement the stigmatic papillae expansion defect of drp1A-2 mutants still needs to be elucidated. Further research will help determine the molecular and biochemical bases of the differences in DRP1A and DRP1C dynamics. Live cell imaging and genetic complementation have demonstrated that although exogenously expressed DRP1C can compensate for the absence of DRP1A during seedling development, the DRP1 isoforms are not completely functionally redundant and display distinct dynamics. Whether these dissimilarities in dynamics account for the inability of DRP1C to complement the stigmatic papillae expansion defect of drp1A-2 mutants remains to be elucidated. These differences may represent specificity in the endocytic pathways of various cargos. Further research will help determine the molecular and biochemical bases of the differences in DRP1A and DRP1C dynamics and their role in CME.
Identification and Phylogeny of Rice and Medicago DRPs AtDRP1A and human dynamin 1 amino acid sequences were used as queries in BlastP searches of the published rice (Oryza sativa) and Medicago truncatula sequences to identify DRPs in these organisms. The putative DRPs were verified as belonging to the dynamin superfamily if they contained the Dynamin GTPase domain in the SMART database (http://smart.embl-heidelberg.de). The amino acid sequences were aligned using the ClustalW method. The phylogenetic tree was created using MegAlign in the DNASTAR Lasergene software suite.
For live cell imaging of DRP1A dynamics: The coding sequence for mOrange (Shaner et al., 2004
For drp1A-2 complementation analysis: 2.0 kb upstream sequence of DRP1A promoter (Kang et al., 2003) was subcloned into pPZP211B containing the NOS terminator (Kang et al., 2001
DRP1A/drp1A-2 plants (ecotype Wassilewskija) were transformed with the constructs encoding DRP1A-mOrange, ApA-myc, ApC-myc, 35pA-GFP, or 35pC-GFP using the Agrobacterium tumefaciens-mediated floral dip method (Clough and Bent, 1998
For visualization of epidermal cells, conditions were as reported (Konopka and Bednarek, 2008
DRP1A-FFP and DRP1C-GFP foci dynamics were captured using VAEM as described (Konopka and Bednarek, 2008
TyrA23 and latB were purchased from EMD Biosciences, oryzalin was purchased from Restek, and fenpropimorph was purchased from Sigma-Aldrich. Fenpropimorph was dissolved in water and all other inhibitors were dissolved in 100% DMSO for stock solutions. Inhibitors were diluted in one-half-strength Murashige and Skoog for VAEM imaging of root epidermal cells. The [DMSO] was 0.1% or less in all working solutions. Five- to 7-d-old vertically grown seedlings were transferred from 1% agar plates to a well of a 12-well culture plate containing 4 mL of final working concentration in one-half-strength Murashige and Skoog. After the indicated time, seedlings were transferred to a glass slide with 150 µL of inhibitor solution, covered with a glass coverslip, the excess liquid wicked away and imaged as above. For fenpropimorph studies, seedlings were grown vertically on one-half-strength Murashige and Skoog, 1% agar plates with or without 10 µg/mL fenpropimorph for 10 to 12 d prior to imaging in one-half-strength Murashige and Skoog media.
To determine expression level of DRP1A-myc, DRP1C-myc, DRP1A-GFP, and DRP1C-GFP, total protein extracts were prepared from drp1A-2:ApA-myc, drp1A-2:ApC-myc, drp1A-2:35pA-GFP, drp1A-2:35pC-GFP, WT:35pA-GFP, and WT:35pC-GFP (WT, wild type) seedlings grown horizontally on one-half-strength Murashige and Skoog + 0.6% phytagar without Suc for 10 d. Seedlings with at least two pairs of leaves were ground in 15 µL of SDS-PAGE sample buffer (Laemmli, 1970
Stage 13 flowers from wild-type plants and drp1A-2 plants expressing no transgene, ApA-myc, ApC-myc, 35SpA-GFP, or 35SpC-GFP were excised and imaged using a Quanta 200 environmental scanning electron microscope (FEI) at 3.78 Torr and 4°C using a 20.0-kV electron beam. Electron emission was detected with the gaseous secondary electron detector.
To image DRP1A-GFP and DRP1C-GFP in papillar cells, stage 13 flowers from plants expressing 35SpA-GFP and 35SpC-GFP in wild-type or drp1A-2 background were excised, flattened, placed on a glass slide with one-half-strength Murashige and Skoog media, and covered with a coverslip. Papillae were imaged using a Nikon TE2000-U inverted laser scanning confocal microscope (Nikon Instruments Inc.) fitted with a 60x (numerical aperture 1.4) PlanApo VC objective lens and excited with 488 nm light (Melles Griot). Z stacks were captured using the EZ-C1 software (Nikon Corporation) and images were recombined using the maximum projection command in Image J (National Institutes of Health).
A focus was defined as a local increase in intensity above a designated threshold assigned to each time lapse image and that was present for at least 2 s. The intensity profiles in Figures 2 to 4
The following materials are available in the online version of this article.
We thank T. Martin and members of his lab for help and extensive use of their epifluorescence-TIRF microscope. Scanning electron microscopy was performed at the Plant Imaging Facility at the University of Wisconsin, Madison. We thank members of our lab, especially S. Backues, D. Rancour, S. Park, and C. McMichael, for critical reading of the manuscript and helpful discussions. Received January 25, 2008; accepted February 21, 2008; published March 14, 2008.
1 This work was supported by the U.S. Department of Agriculture National Research Initiative Competitive Grants Program (project no. 2004–03411 to S.Y.B.), a Howard Hughes Medical Institute Predoctoral Fellowship (to C.A.K.), a National Institutes of Health National Research Service Award (award no. T32 GM07215 to C.A.K.) from the National Institute of General Medical Sciences, and the National Science Foundation (grant no. DBI–0421266).
2 Present address: Department of Pharmacology, University of Washington, Seattle, WA 98195. The author responsible for distribution of materials integral to the findings presented in this article in accordance with the policy described in the Instructions for Authors (www.plantphysiol.org) is: Sebastian Y. Bednarek (sybednar{at}wisc.edu).
[W] The online version of this article contains Web-only data.
[OA] Open Access articles can be viewed online without a subscription. www.plantphysiol.org/cgi/doi/10.1104/pp.108.116863 * Corresponding author; e-mail sybednar{at}wisc.edu.
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