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First published online January 23, 2009; 10.1104/pp.108.130252 Plant Physiology 149:1289-1301 (2009) © 2009 American Society of Plant Biologists OPEN ACCESS ARTICLE
The Signal Peptide Peptidase Is Required for Pollen Function in Arabidopsis1,[C],[OA]Department of Biochemistry and Molecular Biology and Programs in Molecular and Cellular Biology and Plant Biology, University of Massachusetts, Amherst, Massachusetts 01003
The Signal Peptide Peptidases (SPP) are members of the Intramembrane Cleaving Proteases, which are involved in an array of protein-processing and intracellular signaling events in animals. Arabidopsis (Arabidopsis thaliana) has six genes encoding SPP-like proteins, the physiological functions of which are unknown. As a first step in defining the roles of the SPPs in plants, we examined the distribution and activities of Arabidopsis SPP (AtSPP; accession no. At2g03120), the SPP-like gene with the highest degree of similarity to human SPP. The protease is expressed at low levels throughout the plant, with the highest levels in emerging leaves, roots, and floral tissues. Homozygous plants carrying a T-DNA insertion mutation in AtSPP, spp-2, could not be recovered, and transmission of the mutant allele through pollen was reduced to less than 2% in reciprocal cross experiments. Although viable, pollen from spp-2 heterozygous plants exhibited a 50% reduction in germination rate and a disruption in male germ unit organization. These data demonstrate that AtSPP is required for male gametophyte development and pollen maturation in Arabidopsis.
Intramembrane Cleaving Proteases (I-CLiPs) are a family of integral membrane proteases involved in a wide array of protein-processing and intracellular signaling events (Golde and Eckman, 2003
One class of I-CLiPs is exemplified by Signal Peptide Peptidase (SPP; also PSH and IMPAS), an endoplasmic reticulum (ER)-resident protease that cleaves certain signal peptides after they have been released from proteins entering the secretory pathway (Grigorenko et al., 2002
Human SPP is an integral membrane protein with seven transmembrane segments, oriented such that its N terminus is lumenal and its C terminus is cytosolic. SPP is an aspartic protease and, consistent with the enzyme's ability to catalyze intramembrane cleavage, the two active site Asp residues are located in the middle of adjacent transmembrane domains. The active site of SPP is similar to that of presenilin, and the two enzymes have overlapping inhibitor sensitivities. Numerous SPP-like proteins have been identified in humans and other animals, and they all share certain structural features: (1) they are predicted to be polytopic integral membrane proteins; (2) they contain the conserved active site motifs YD and LGLGD; and (3) they contain a conserved sequence of unknown function, QPALLYxxP (Weihofen et al., 2002
Several recent studies have used genetic approaches to examine the physiological functions of SPP in various animal models. Knockdown of SPP in zebrafish embryos led to cell death within the nervous system (Krawitz et al., 2005
The SPP family is conserved across all multicellular eukaryotes examined, including plants. Arabidopsis (Arabidopsis thaliana) contains six potential genes encoding SPP-like proteins (Ponting et al., 2002
Expression Profile of AtSPP
As a first step in defining the functions of the SPP-like genes in Arabidopsis, we focused our attention on the gene most closely related to human SPP (Fig. 1A
; Weihofen et al., 2002
To determine the tissue distribution of AtSPP expression, we created transgenic lines carrying the GUS gene fused to the putative promoter region of AtSPP. Faint GUS staining was observed in most tissues throughout the plant, with somewhat stronger staining in emerging leaves and especially intense staining in the stipules, roots, flowers, and vasculature of leaves (Fig. 2, A–F ). To confirm the GUS staining results, we estimated the relative abundance of transcript from the endogenous AtSPP gene in various organs using comparative reverse transcription (RT)-PCR with 18S rRNA as our internal control (Fig. 2G). Root, cotyledon, and emerging leaves were dissected from 7-d-old seedlings. Mature leaves, stems, flowers, and siliques were collected from mature plants at least 3 weeks old. AtSPP transcript levels were highest in emerging leaves, flowers, and roots, with moderate levels detected in other tissues. These results are generally consistent with microarray data available online (https://www.genevestigator.ethz.ch/). For example, developmental data from the AtGenExpress project (Schmid et al., 2005
To examine the distribution of AtSPP protein, we immunoblotted total protein extracts from wild-type plants expressing AtSPP-Flag with anti-Flag antibody. Plant material was harvested at a similar stage of plant development as that used for RT-PCR. The AtSPP signals were strongest in emerging leaves and flowers, with lower levels of protein detected in roots of 7-d-old seedlings (Fig. 2H). A faint signal also was seen in cotyledons, mature leaves, and siliques, with no detectable protein in stem extracts. These results were in general agreement with the mRNA levels, although the protein expression data suggested a more significant difference in AtSPP expression in different tissues.
The tissue expression profile of AtSPP suggested that this gene might play a specialized role in roots and developing tissues, such as emerging leaves and reproductive tissues. To further explore the function of AtSPP, we characterized two AtSPP T-DNA insertion lines in the Columbia (Col-0) ecotype, obtained from the Arabidopsis Biological Resource Center (ABRC). The first T-DNA line, WiscDsLox 331C12 (http://www.hort.wisc.edu/krysan/DS-Lox/; http://signal.salk.edu/cgi-bin/tdnaexpress) or spp-2, was identified by a BLAST search of available T-DNA border sequences using the AtSPP genomic sequence. Although the annotation of this insertion does not reference the At2g03120 locus, our analysis indicated that it contains tandem repeated copies of the T-DNA inserted in the last exon of the gene (Fig. 3, A and B ). Therefore, this line appears to be misannotated in the databases. This line was backcrossed with Col-0 wild-type plants to eliminate any additional T-DNA insertions that are unrelated to the T-DNA insertion in At2g03120.
Genomic PCR with gene-specific and T-DNA-specific primers confirmed the presence of normal and T-DNA-disrupted alleles (Fig. 3C, compare lanes 4 and 8) in spp-2 heterozygous plants. RT-PCR demonstrated that the spp-2 heterozygotes produce, in addition to the normal AtSPP transcript (Fig. 3C, lane 6), an aberrant transcript that includes most of the coding region of AtSPP and extends into the T-DNA (Fig. 3C, lane 2). If translated, this transcript would produce a protein that is missing the last seven amino acids of AtSPP, including a putative ER retention signal (Fig. 1A), and has an additional 29 amino acids derived from the T-DNA sequence.
The second T-DNA insertion line, SALK_098736 (Alonso et al., 2003
Heterozygous spp-2 individuals (+/spp-2) appeared normal, but no homozygotes were recovered based on PCR genotyping (Table I
), indicating that very few, if any, homozygous embryos were viable (Drews et al., 1998
More detailed studies of AtSPP expression in male gametophytic tissues were consistent with a role for the protease in pollen development and function. Analysis of expression of the AtSPP promoter-GUS transcriptional fusion in the anthers of transgenic plants demonstrated expression in intact (Fig. 4A ) and sectioned (Fig. 4B) pollen grains. Comparative RT-PCR analysis of RNA isolated from whole flowers and purified pollen from wild-type plants indicated that AtSPP mRNA levels are similar in both samples (Fig. 4D). mRNA levels in these tissues are significantly higher than in leaf tissue (Fig. 4E, top), but AtSPP expression is less tissue-specific than that of the pollen-specific marker, AtTIP5;1, or a photosynthesis gene not expressed in pollen, CAB2. The high levels of expression of AtSPP in flowers and pollen relative to leaf tissues were confirmed by immunoblotting of protein extracts from plants expressing AtSPP-Flag under the control of the AtSPP promoter (Fig. 4F).
We transformed plants with an AtSPP construct containing the GFP (AtSPP-GFP) inserted just upstream of the putative ER retention signal to examine the subcellular distribution of AtSPP in pollen. GFP fluorescence in pollen from AtSPP-GFP plants exhibited a reticular pattern (Fig. 5A ). The pattern was distinct from the diffuse cytoplasmic and nuclear signal when GFP was expressed under the control of the LAT52 pollen-specific promoter (Fig. 5E). Furthermore, the reticular AtSPP-GFP signal appears to move from the pollen body into the growing pollen tube (Fig. 5, B–D), whereas GFP alone is distributed evenly throughout the body and tube of germinated pollen (Fig. 5, F–H). Taken together, the results in Figures 4 and 5 were consistent with the high expression levels and ER localization of AtSPP in pollen.
Pollen Produced by spp-2 Heterozygotes Showed Poor Germination
To determine the basis of the male defect conferred by the spp-2 allele, we first examined the viability and morphology of pollen shed from heterozygous plants. Col-0 wild-type plants and wild-type siblings from the spp-2 heterozygous line were used as controls. Using Alexander stain to score pollen viability, there was little difference between spp-2 heterozygote pollen and that from the wild-type controls (Fig. 6, A and B
; 98.7% and 99.0% viability, respectively). A detached pistil assay (Lalanne et al., 2004
Genetic Complementation of spp-2 Plants In order to confirm that the male defect in spp-2 is due to disruption of AtSPP, genes encoding AtSPP, AtSPP-Flag (Fig. 2), or AtSPP-GFP (Fig. 5) under the control of the AtSPP native promoter were introduced into +/spp-2 plants by pollinating +/spp-2 with the pollen from transgenic plants expressing each transgene. Segregation analysis of the F2 generation from the crosses demonstrated that AtSPP, AtSPP-Flag, or AtSPP-GFP expression increased the ratio of basta-resistant to basta-sensitive progeny, indicating complementation of the spp-2 allele (Table II ). Homozygous spp-2 plants were recovered in each of the three lines, as demonstrated by PCR genotyping of the progeny from transformed +/spp-2 plants (Fig. 7 , lane 2). These data confirmed that the male gametophyte defect in the spp-2 lines was due to a defect in AtSPP function. Furthermore, these data validate the expression and localization studies using AtSPP-Flag and AtSPP-GFP lines that are presented in Figures 2, 4, and 5.
The Organization of the Male Germ Unit Is Disrupted in +/spp-2
During our analyses of pollen structure and viability in the +/spp-2 plants, we frequently observed abnormal nuclear morphology in pollen stained with 4',6-diamidino-2-phenylindole (DAPI) solution. In tricellular pollen species such as Arabidopsis, two consecutive mitotic events (pollen mitosis I and II) following meiosis give rise to three cells within each pollen grain. These correspond to a single, round vegetative nucleus and two small sperm cells each containing an additional nucleus. These three structures constitute the male germ unit (MGU; Matthysrochon et al., 1987
To confirm that the gum-like and mud-like phenotypes were due to the disruption of AtSPP, we tested whether the phenotypes were attenuated in spp-2 plants complemented with AtSPP-Flag or AtSPP-GFP. The frequency of gum-like and mud-like phenotypes was reduced to 2.8% and 16.3% in the spp-2:AtSPP-Flag and spp-2:AtSPP-GFP lines, respectively (Table III). These results demonstrated a direct correlation between AtSPP disruption and the gum-like and mud-like mutant phenotypes in spp-2 pollen.
The approximately 50% incidence of the gum-like and mud-like phenotypes in +/spp-2 pollen suggested a gametophytic rather than a sporophytic defect in pollen development (Table III). To test this, we performed tetrad analysis of +/spp-2 plants that had been crossed with the quartet1 (qrt1) mutant (Preuss et al., 1994
The gum and mud phenotypes began to appear after pollen mitosis II and increase during pollen maturation (Lalanne and Twell, 2002
In this study, we investigated the expression and physiological function of AtSPP in Arabidopsis. There is a family of six related SPP genes in Arabidopsis with similarity to human SPP (Tamura et al., 2008
Tamura et al. (2008)
Analysis of the spp-2 T-DNA insertion line indicated that AtSPP performs an essential function in Arabidopsis. The pollen phenotype of spp-2 heterozygotes indicated that AtSPP is specifically required for pollen development and germination. Consistent with a role in post-pollination events such as gametophyte development and pollen tube elongation, a microarray study of gene expression during pollen development showed that AtSPP clustered with other genes expressed late in development (cluster 6; Honys and Twell, 2004
The MGU defect in spp-2 pollen was very reminiscent of the mud and gum phenotypes described previously by Lalanne and Twell (2002)
AtSPP shows relatively high expression in certain vegetative organs of Arabidopsis, including stipules, emerging leaves, and the vasculature of roots and leaves, but the lack of homozygous mutant plants prevented an investigation of AtSPP's role in vegetative organs. A recent study in Medicago truncatula showed that an SPP-like gene is coinduced with a large family of secreted nodule-specific Cys-rich polypeptides (Mergaert et al., 2003 The physiological function of AtSPP will not be entirely clear until its substrates are identified. Nevertheless, our results demonstrate a critical role for AtSPP in the development and function of reproductive tissues in Arabidopsis, especially in pollen development. Future advances in the biochemistry of pollen development may provide clues to the exact function of AtSPP in plant reproduction.
Plant Material and Growth Conditions Arabidopsis (Arabidopsis thaliana Col-0 ecotype) T-DNA lines SALK_098736, WiscDsLox 331C12, and qrt1 mutant were obtained from the ABRC (www.Arabidopsis.org/abrc/). LAT52:GFP transgenic plants were kindly provided by Dr. Alice Cheung at the University of Massachusetts-Amherst. Plate-grown plants were grown on half-strength Murashige and Skoog salts containing 1% (w/v) Suc, buffered with 5 g L–1 MES, pH 5.7, and solidified with 0.5% (w/v) Phyto Agar (Research Products International). Soil-grown plants were grown on Promix BX (Premier Horticulture) wetted with deionized water containing 1 g L–1 Miracle-Gro (Scotts Miracle-Gro Company) and 5 mL L–1 Gnatrol concentrate (Abbot Laboratories). Plants were grown in a growth chamber at 22°C with a 16-h-light/8-h-dark photoperiod.
For T-DNA lines SALK_098736 and WiscDsLox 331C12 (spp-2), the mutant alleles were verified by PCR genotyping and by sequencing the PCR products. The SALK_098736 insertion allele was detected using the left border primer LBb1 (5'-GCGTGGACCGCTTGCTGCAACT-3'; see http://signal.salk.edu/cgi-bin/tdnaexpress) and the gene-specific primer 5'-TCGGACGCGTCTTTGCTACTA-3'. The WiscDsLox 331_C12 allele, spp-2, was detected using the left border primer p745 (5'-AACGTCCGCAATGTGTTATTAAGTTGTC-3') and the gene-specific primers Wisc_F and Wisc_R (5'-ACTGGTTTCAAGCAGCACAGG-3' and 5'-TCTCCAAATAGCTCCCCAAGC-3', respectively). For PCR genotyping, DNA was extracted as described (Edwards et al., 1991
The AtSPP promoter:GUS (pProAtSPP:GUS) fusion construct was generated using the Gateway system (Invitrogen). A 1,096-bp fragment, containing the putative promoter and the first three codons of the AtSPP gene, was amplified from genomic DNA by PCR using the forward primer 5'-CACCTTCATTTTTGATGATGTCGTC-3' (the underlined bases were introduced for directional TOPO cloning) and the reverse primer 5'-ATTCTTCATAATTGCTTCTTGTG-3' and cloned into pENTR-DTOPO using the pENTR Directional TOPO Cloning kit (Invitrogen). The resulting entry vector, pProAtSPP, was used in a LR recombination reaction with the pDEST G2 destination vector, which encodes the Escherichia coli uidA gene. The resulting binary vector, pProAtSPP:GUS, carried the GUS reporter gene fused in frame to the putative promoter and first three codons of AtSPP, with kanamycin resistance as the plant selectable marker and spectinomycin resistance as the bacterial selectable marker.
AtSPP-Flag and AtSPP-GFP were constructed from TAP0180, a cDNA for AtSPP that is complete except for the first 21 bases of the 5' untranslated region (UTR) and the last 24 bases of the 3' UTR (obtained from the ABRC). TAP0180 was first mutagenized by PCR to remove a SpeI site at the junction between the cDNA insert and the multicloning site, resulting in TAP0180-one-SpeI. For pAtSPP-Flag, two complementary oligonucleotides, containing the Flag codons (DYKDDDDK; Hopp et al., 1988
AtSPP-Flag, AtSPP-GFP, and a 3-kb genomic DNA fragment encoding AtSPP were introduced into the pDEST-NOS binary vector using the Gateway system (Invitrogen). All transgenic plants were generated using the floral dip method (Clough and Bent, 1998 For complementation of spp-2, +/spp-2 plants were pollinated with transgenic plants carrying genes encoding AtSPP, AtSPP-Flag, and AtSPP-GFP under the control of the AtSPP native promoter. In the F1 generation, +/spp-2 plants expressing each transgene were self-crossed and their progeny were genotyped using PCR to detect the wild-type AtSPP allele, the spp-2 T-DNA insertion, or the appropriate transgene.
For RNA extraction, tissues were frozen in liquid nitrogen and ground with mortar and pestle. Pollen was collected from open flowers on ice as described previously (Honys and Twell, 2003 PCR products were resolved on 1% Tris-acetate EDTA agarose gels containing ethidium bromide. Band intensities were analyzed using a Kodak EDAS 290 camera and 1D image analysis software (Eastman Kodak). For each tissue, the ratio of AtSPP to 18S rRNA was normalized to the average AtSPP-18S rRNA ratio obtained for the root sample.
For immunodetection of in vivo expressed AtSPP-Flag, total protein extracts were prepared by grinding plant tissue samples (100 mg fresh weight) in 100 µL of extraction buffer containing 0.35 M Tris base, 7.5% glycerol, 5% SDS, and protease inhibitor cocktail (Sigma P-9599). Each sample was centrifuged at 12,000g for 5 min, and the supernatant was used as the total protein extract. Protein concentration was measured using the bicinchoninic acid protein assay kit (Pierce). Protein samples were resolved by SDS-PAGE and immunoblotted following standard protocols. Mouse anti-Flag M2 monoclonal antibody (Sigma F3165) was the primary antibody, and horseradish peroxidase-conjugated rabbit anti-mouse IgG (Rockland Immunochemicals) was the secondary antibody. Bound antibody was detected by chemiluminescence detection.
For in vitro translation of AtSPP, PCR was used to amplify the coding region from TAP0180 and pAtSPP-Flag and simultaneously introduce an NdeI site at the start codon for AtSPP. The PCR products were then cloned into pZErO-2 (Invitrogen) by blunt end ligation. Finally, the AtSPP coding region was removed with NdeI and EcoRI and subcloned into pET21a (Novagen) to yield pET21a AtSPP and pET21a AtSPP-Flag. 35S-labeled (Perkin-Elmer Life Sciences) in vitro translation products were generated in 25 µL of a TnT coupled reticulocyte system (Promega) according to the manufacturer's instructions. All samples were resolved by SDS-PAGE and imaged with a Fuji FLA 5000 phosphoimager (Fuji Film Medical Systems) or detected by immunoblotting.
Tissue samples were fixed in ice-cold 10% (v/v) acetone, vacuum infiltrated for 15 min on ice, and incubated at 37°C for 16 or 24 h in a GUS staining solution containing 10 mM EDTA, 2 mM K3Fe(CN6), 2 mM K4Fe(CN6)·3H2O, 0.1% Triton X-100, 100 µg mL–1 chloramphenicol, and 2 mM X-GlcUA (Gold Biotech Technology; dissolved in N,N-dimethylformamide) in 50 mM sodium phosphate buffer, pH 7.0 (Vielle-Calzada et al., 2000
GUS staining was observed with a SMZ800 stereomicroscope or a E-600 microscope (Nikon Instruments), and GFP fluorescence was observed using an E-600 epifluorescence microscope (Nikon Instruments) equipped with an FITC-HYQ filter set (EX460-500, DM505, BA510-560). A Spot-RT camera system (Diagnostic Instruments) was used for image capture.
Aniline blue staining of pollen tubes and ovules was based on the method of Schiott et al. (2004)
For AtSPP-GFP localization, pollen grains collected from AtSPP-GFP, LAT52:GFP, and wild-type flowers were germinated on glass slides in 25 µL of germination medium (Hicks et al., 2004
Pollen germination rates were determined using an in vivo pollination assay (Lalanne et al., 2004
WiscDsLox 331C12 (+/spp-2) plants were pollinated with pollen from homozygous qrt1/qrt1 plant lines (Landsberg erecta ecotype; qrt1-1; Preuss et al., 1994 Sequence data from this article can be found in the GenBank/EMBL data libraries under accession numbers CAD13132.1 (HsSPP), NM_126363 (AtSPP), NM_102732 (CAB2), and NM_114612 (AtTIP5;1).
We thank Dr. Peter Hepler, Dr. Tobias Baskin, Dr. Maura Cannon, and Dr. Joe Jerry for the generous use of their microscopes and technical support for histological studies. We thank Dr. Elsbeth Walker for supplying us with plasmids (pDEST G2) for this work, Zeke Nims for assistance with Southern-blot analysis, Dr. Caleb Rounds and Dr. Sook-Young Yoon for assistance in collecting GFP and DAPI confocal images, and Dr. Natasha Raikhel for At TIP antisera. We also thank Dr. Alice Cheung for providing the LAT52:GFP plants. Received September 23, 2008; accepted January 20, 2009; published January 23, 2009.
1 This work was supported by the National Institutes of Health (grant no. R01 GM–61893 to D.J.S.) and by the Central Microscopy Facility of the University of Massachusetts, which is supported by the National Science Foundation (grant no. BBS 8714235).
2 These authors contributed equally to the article. The author responsible for distribution of materials integral to the findings presented in this article in accordance with the policy described in the Instructions for Authors (www.plantphysiol.org) is: Danny J. Schnell (dschnell{at}biochem.umass.edu).
[C] Some figures in this article are displayed in color online but in black and white in the print edition.
[OA] Open Access articles can be viewed online without a subscription. www.plantphysiol.org/cgi/doi/10.1104/pp.108.130252 * Corresponding author; e-mail dschnell{at}biochem.umass.edu.
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