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First published online March 18, 2009; 10.1104/pp.109.135624 Plant Physiology 150:402-415 (2009) © 2009 American Society of Plant Biologists OPEN ACCESS ARTICLE
Grapevine MATE-Type Proteins Act as Vacuolar H+-Dependent Acylated Anthocyanin Transporters1,[W],[OA]
UMR Sciences pour l'
In grapevine (Vitis vinifera), anthocyanins are responsible for most of the red, blue, and purple pigmentation found in the skin of berries. In cells, anthocyanins are synthesized in the cytoplasm and accumulated into the vacuole. However, little is known about the transport of these compounds through the tonoplast. Recently, the sequencing of the grapevine genome allowed us to identify genes encoding proteins with high sequence similarity to the Multidrug And Toxic Extrusion (MATE) family. Among them, we selected two genes as anthocyanin transporter candidates and named them anthoMATE1 (AM1) and AM3. The expression of both genes was mainly fruit specific and concomitant with the accumulation of anthocyanin pigment. Subcellular localization assays in grapevine hairy roots stably transformed with AM1:: or AM3::green fluorescent protein fusion protein revealed that AM1 and AM3 are primarily localized to the tonoplast. Yeast vesicles expressing anthoMATEs transported acylated anthocyanins in the presence of MgATP. Inhibitor studies demonstrated that AM1 and AM3 proteins act in vitro as vacuolar H+-dependent acylated anthocyanin transporters. By contrast, under our experimental conditions, anthoMATEs could not transport malvidin 3-O-glucoside or cyanidin 3-O-glucoside, suggesting that the acyl conjugation was essential for the uptake. Taken together, these results provide evidence that in vitro the two grapevine AM1 and AM3 proteins mediate specifically acylated anthocyanin transport.
Anthocyanins are plant secondary metabolites, responsible for most of the red, blue, and purple pigmentation found in flowers, fruits, and leaves (Harborne and Williams, 2000
In plants, anthocyanins are part of the flavonoid biosynthetic pathway, which is one of the most intensively studied in plants (Winkel-Shirley, 2001
Two major mechanisms have been proposed for transport across the tonoplast, primary transport mediated by ATP-binding cassette (ABC) transporters (Lu et al., 1998
In grapevine, no experimental evidence supporting the existence of the VT and/or the LT model is available. A glutathione S-transferase (GST) whose gene expression pattern is coordinated with color development was identified in grape berries (Ageorges et al., 2006
Structure of AnthoMATE Genes and in Silico Analysis of Deduced Proteins
From the grapevine genome sequence (Jaillon et al., 2007
From Syrah mature berries, full-length cDNAs for AM1 and AM3 were amplified by reverse transcription-PCR, cloned, and fully sequenced. In contrast, all our attempts to clone AM2 were not successful, suggesting that AM2 was probably not expressed at detectable levels in mature berry or was a pseudogene. AM1 and AM3 transcripts were 1,482 and 1,470 nucleotides long, respectively, coding for polypeptides of 493 and 489 amino acid residues with predicted molecular masses of 53.85 and 53.50 kD and calculated pI values of 6.53 and 5.89, respectively (Fig. 3 ). The proteins exhibited 86% identity to each other. The prediction of transmembrane domains using the transmembrane hidden Markov model suggested 12 putative transmembrane segments for AM1 and AM3. This structure was similar to those of TT12 and MTP77 (Fig. 3). The Pfam database predicted for both AM1 and AM3 an architecture with two MatE domains (PF01554). The predicted MatE domain is highly similar to the MatE domain of MTP77, while less similarity was found for TT12. Five domains (D1–D5) appeared to be particularly conserved. Interestingly, D3 was located in transmembrane segment 7, while all other conserved domains were positioned in cytoplasmic loops.
AnthoMATE Protein Localization
To examine the subcellular localization of anthoMATE proteins, the full-length AM1 and AM3 cDNAs were fused at their C termini to GFP under the control of the cauliflower mosaic virus 35S promoter. The in vivo localization of both anthoMATE proteins was performed in hairy root cultures of grapevine stably transformed with GFP fusions and, as a control, with GFP alone. Confocal microscopy analysis of hairy roots ectopically expressing the transgenes AM1::GFP and AM3::GFP was performed after plasmolysis of cells with sorbitol and counterstaining of nuclei with 4',6-diamino-phenylindole (DAPI; Fig. 4
). Epidermal cells of hairy roots expressing anthoMATE-GFP fusions exhibited intracellular membrane-bound GFP fluorescence that internally surrounded the nucleus (Fig. 4, B and C). Gentle plasmolysis separates tonoplast from the cell wall and demonstrates clearly that the GFP fluorescence surrounds the vacuole and thus localizes to the tonoplast (Fig. 4, D and E). GFP fluorescence in membrane structures attached to the nucleus was also detected for AM1::GFP and AM3::GFP compared with GFP alone, where fluorescence was observed only in the cytosol (Fig. 4). Transient expression by biolistic particle delivery of AM1::GFP fusion together with the established tonoplast marker TPK1 (Czempinski et al., 2002
AnthoMATE Gene Expression In order to define changes in expression associated with anthocyanin biosynthesis in grapevine berry, quantitative real-time PCR was performed on both anthoMATE genes during Syrah berry development. Both anthoMATE genes followed similar expression patterns during berry development (Fig. 5, A and B ). Before the onset of ripening, AM1 and AM3 were hardly detectable in berry. After véraison, an increase of expression during the ripening stage was observed for both anthoMATE genes (Fig. 5, A and B). The expression profiles for AM1 and AM3 genes throughout berry development were correlated to the biosynthesis of anthocyanins. AnthoMATE gene expression was then evaluated in several tissues (Fig. 5, C and D). While AM1 transcript was found at low levels in young and old leaves, no AM3 expression was measured in leaves. In the other vegetative organs, both AM1 and AM3 transcripts were weakly present. Moreover, AM1 and AM3 expression was quite restricted to berry skin, where anthocyanin biosynthesis takes place (Fig. 5, C and D).
In order to investigate changes in expression in relation to anthocyanin composition in mature berries, the expression of both genes was also monitored on a set of 15 cultivars (Fig. 6 ). The berry samples were selected among white, pink, and red cultivars in order to maximize the phenotypic variation for anthocyanin content (Fig. 6A). Biochemical analysis showed a significant diversity in anthocyanin metabolites within the studied cultivars (Supplemental Table S1). In all cultivars, AM1 expression was observed, and the expression level was independent of the anthocyanin content and composition in the berry samples (Fig. 6C). Conversely, AM3 exhibited a higher expression in the red cultivars than in the other cultivars (Fig. 6D). When the ratio of acylated anthocyanin to total anthocyanin content in mature berry skins was compared with the expression patterns, it became evident that AM3 expression correlates with the presence of acylated anthocyanins rather than the total anthocyanin content (Fig. 6, B and D). Indeed, expression of AM3 was very weak in all white and pink cultivars, except for Roussaitis. This cultivar was the only pink cultivar containing all of the glucosylated anthocyanins plus petunidin 3-acetylglucoside and malvidin 3-p-coumaroylglucoside; all others contained only cyanidin 3-O-glucoside (C3G; Supplemental Table S1). A correlation of the level of expression of AM3 with the ratio of acylated anthocyanin to total anthocyanin content was found (Pearson test r = 0.75, significant at P = 0.0015).
Overall, the expression of AM1 and AM3 was essentially fruit specific and concomitant with the accumulation of anthocyanin pigments. Moreover, AM3 expression in mature berry was correlated with the percentage of acylated anthocyanin contained in berry.
To investigate the transport activity of anthoMATE proteins, the full-length AM1 and AM3 cDNAs were expressed in Saccharomyces cerevisiae under the control of the constitutive PMA1 promoter on a 2µ plasmid. Control experiments were performed in parallel with yeast transformed with the empty vector and with TT12 (Marinova et al., 2007
Transport experiments with various substrates were performed with a standard substrate concentration of 1 mM using the rapid filtration technique (Tommasini et al., 1996 In the presence of MgATP and using either C3G or M3G, the amount of vesicle-associated substrates remained unchanged for anthoMATEs- or empty vector-derived vesicles (Fig. 7, A and B ). These results suggest that, under our experimental conditions, C3G and M3G were not transported by either anthoMATE protein (Fig. 7, A and B).
In a second experiment, we used the acylated anthocyanin mixture as a substrate for anthoMATE-dependent transport. In the presence of MgATP, vesicles expressing AM1 or AM3 exhibited an increase in their A536 ( max for malvidin 3-p-coumaroylglucoside) after 1 min of transport, suggesting an uptake of this compound (Fig. 7, A and B). In the presence of MgATP, a time-dependent increase in absorption occurred when the acylated anthocyanin mixture was incubated with AM1- and AM3-containing vesicles when compared with empty vector-derived vesicles, whose absorption remained unchanged over time (Fig. 7, C and D). HPLC analysis of the anthocyanins recovered from vesicles containing anthoMATE proteins after incubation with the acylated anthocyanins showed that transport occurs in the presence of MgATP as an energy source only (Fig. 7E). Taken together, these results indicate that acylated anthocyanins were selectively transported into vesicles by both anthoMATE proteins and when energization by MgATP occurred (Fig. 8
).
To validate our experimental conditions, we performed the same test using TT12-containing vesicles (Marinova et al., 2007 pH, were used in the transport experiments with acylated anthocyanin substrate. None of the treatments altered the level of substrate bound to empty vector-derived vesicles (Table II
). The addition of NH4Cl resulted in a strong decrease in the uptake of substrate, while vanadate had no observed effect, meaning that the uptake of acylated anthocyanins by anthoMATE proteins depends on a proton gradient (Table II). These data demonstrated that AM1 and AM3 act in vitro as vacuolar H+-dependent acylated anthocyanin transporters.
MATE Transporters in Grapevine
The access to the whole genome sequence of grapevine (Jaillon et al., 2007
In addition to anthoMATEs, we revealed a large number of virtual MATE proteins (65) close to those reported in Arabidopsis (Omote et al., 2006
The high similarity found for AM1 and AM3 suggests that these two genes could have significant functional overlap, especially with regard to their substrate specificity. The data presented here indicate that the expression of AM1 and AM3 in mature berries differed among cultivars. In Arabidopsis and yeast, it was demonstrated that multicopy genes showed a rapid divergence in expression to coordinately achieve more complex control of the same genetic network (Gu et al., 2002
Grape berries accumulate three major types of flavonoid compounds, anthocyanins, flavonols, and flavan-3-ols, at different stages of their development (Boss et al., 1996
AM1 and AM3 mediate the transport of anthocyanin-acylglucosides, while anthocyanin-glucosides were not transported under our experimental conditions. This suggests that the acyl conjugation is essential for the uptake of anthocyanin by anthoMATEs. Transport studies with isolated vacuoles from parsley (Petroselinum crispum) and carrot earlier indicated that the acyl residues attached to flavonoids are important determinants of substrate specificity (Matern et al., 1986
Until now, to our knowledge, no anthocyanin acyltransferase has been identified in grapevine. It remains unclear if the methylation and the acylation take place in a chronological manner into the anthocyanin pathway. No evidence has been provided whether the enzymes are localized in the cytoplasm or inside the vacuole. Research in other plants revealed that the modification of anthocyanins is family or species dependent (Tanaka et al., 2008
Different forms of anthocyanin accumulation have been observed as intravacuolar bodies and are referred as anthocyanin vacuolar inclusions (AVIs) in different plants. In flower coloration, AVIs showed a major influence on flower color by enhancing intensity and blueness by concentrating anthocyanins above levels that would be impossible in vacuolar solution (Markham et al., 2000
AnthoMATE proteins mediate specifically acylated anthocyanin transport in vitro. This suggests that other mechanisms should be involved in the transport of the nonacylated anthocyanins predominating in grape berries. Whether MRP transporters and MATE transporters are involved in anthocyanin transport has been a matter of debate. For MATE transporters, our work indicates that acyl residues are important determinants for transport. In vitro, TT12 transported C3G in an ATP-dependent and uncoupler-sensitive manner but not the aglycones cyanidin or epicatechin (Marinova et al., 2007
For MRP transporters, their specificity is less reported. In grapevine hairy roots expressing ectopically VlmybA1-2, a high-throughput (but nonexhaustive) transcriptomic screening did not reveal genes encoding for proteins with a structure highly similar to MRP proteins (Cutanda-Perez et al., 2009
In this study, AM1::GFP and AM3::GFP protein fusions were localized at the tonoplast and in membrane structures attached to the nucleus of grapevine hairy root epidermal cells. Recently, in Arabidopsis seedlings, anthocyanins were localized in cytoplasmic structures that resemble ER bodies (Poustka et al., 2007 In conclusion, this study reports specific transport of acylated anthocyanins mediated by vacuolar anthoMATE transporters. We suggest that the MATE proteins identified here act as acylation-dependent anthocyanin transporters in grape berry. The existence of other transport mechanisms has to be elucidated, and the characterization of their in vivo role would supply more evidence about a hypothetical relationship between the transport mechanism and the anthocyanin composition. However, it is important to note that the anthocyanin composition is different in each plant species. It will be interesting to investigate how the overall anthocyanin structures biosynthesized in one species reflect the transport mechanisms used and if the transport mechanism used is more species specific or anthocyanin structure specific.
Chemicals and Pigment Extraction M3G and C3G were purchased from Extrasynthese. All other chemicals were from Sigma-Aldrich.
The mixture of acylated anthocyanins was isolated from grapevine (Vitis vinifera Syrah) berry. At first, an anthocyanin extract was prepared from grape skin powder by extraction with methanol:water:HCl (30:70:0.2, v/v/v) twice for 3 h at room temperature. Then, after concentration of this extract under vacuum, HPLC separation was performed by means of a Gilson system equipped with a reverse-phase Microsorb C18 column (100 Å, 5 µm, 220 x 22.4 mm i.d.). Elution was with solvent A (water:chlorhydric acid, 99.8:0.2, v/v) and solvent B (acetonitrile:water:chlorhydric acid, 80:19.8:0.2, v/v/v) with a 10 mL min–1 flow rate, linear gradients from 18% to 21% B in 10 min, from 21% to 30% B in 10 min, and from 30% to 80% B in 2 min, followed by washing and reequilibrating of the column. Its composition was determined by HPLC analysis as described by Fournand et al. (2006) For uptake experiments, M3G, C3G, and the acylated anthocyanin mixture were dissolved as 10 mM stock in 10% methanol and 0.1% HCl.
Roots, shoots, leaves, and berries were harvested from grapevine plants (Syrah) grown in the SupAgro-INRA vineyard in Montpellier, France. Young leaves were from the third rank, counted from the apex, with mean weight of 0.3 g per leaf. Old leaves were fully expanded leaves with mean weight of 2.8 g per leaf. Berries were collected at nine developmental stages as described previously (Terrier et al., 2005
For the expression analysis, 15 genotypes were selected to maximize the phenotypic variation for the anthocyanin berry content (Supplemental Table S1). Berries were sorted on a sodium chloride density gradient in order to compare berries at the same level of maturity (density of 100–120 g L–1). All collected samples were quickly frozen in liquid nitrogen, ground to a fine powder with a Dangoumau blender, and stored at –80°C until use. Anthocyanins were analyzed by HPLC according to Fournand et al. (2006)
RNA was extracted from 200 mg of starting tissue using the RNeasy Plant Mini Kit (Qiagen) following the manufacturer's protocol. RNA was quantified with Ribogreen (Molecular Probes), and reverse transcription was performed from each sample from 500 ng of purified RNA using the SuperScript II RT Kit (Life Technologies). PCR amplification was performed from 125 ng of cDNA using the SYBR Green PCR Master Mix (Perkin-Elmer Applied Biosystems) with the 7300 Sequence Detection System (Applied Biosystems). Gene transcripts were quantified upon normalization to VvEF1
Grapevine sequences were recovered and annotated by the Genoscope genome browser (http://www.genoscope.cns.fr/vitis/; data obtained from the 8-fold coverage of the genome). Database searches for homologous sequences were performed on the BLAST server (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi). Multiple sequence alignment was performed with ClustalW alignment (http://www.ebi.ac.uk/Tools/clustalw2/index.html). Phylogenetic analysis was performed using Protml of the Phylip package (http://evolution.genetics.washington.edu/phylip.html) and edited with Dissimilarity Analysis and Representation for Windows (DARwin) software (http://darwin.cirad.fr/darwin). Information on the transporter domain was obtained from the Pfam database (http://pfam.sanger.ac.uk/). Transmembrane regions were predicted by the HMMTOP program (http://www.enzim.hu/hmmtop/index.html).
The AM1::GFP and AM3::GFP fusions were obtained by Gateway cloning strategy (Invitrogen). The stop-codon-less AM1 and AM3 cDNAs were amplified using high-fidelity Taq Polymerase (Advantage-HF2 PCR Kit; Clontech) according to the manufacturer's instructions. The following primers were used: AM1 forward, 5'-CACCATGGAGACGCCGCTGCTCAACAG-3', and AM1 reverse, 5'-GACATCATCACTCGTCTTCTT-3'; AM3 forward, 5'-CACCATGGAGACACCGCTGCTCAAGAGC-3', and AM3 reverse, 5'-TACATCATCGGCTTCAATCC-3'. The resulting PCR products were transferred into pENTR/D-TOPO vector (Invitrogen) and subsequently into pH7FWG2 (Karimi et al., 2002
Subcellular localization of AM1::GFP and AM3::GFP fusions was investigated after stable transformation of root lines of grapevine (cv Maccabeu). Induction and culture of transformed root lines were performed as described by Torregrosa and Bouquet (1997) For confocal microscopy analysis, young root tips were placed in 1 µM DAPI for 10 min and then rinsed in 10 mM phosphate-buffered saline, pH 7.2, with or without 0.3 M sorbitol and mounted with the same buffer. The confocal microscope was focused on the epidermal or subepidermal cell layer. GFP was excited at 488 nm with an argon laser, and the emission was collected between 500 and 530 nm. DAPI was excited at 730 nm with a Chameleon Ultra II laser, and the emission was collected between 385 and 465 nm. The fluorescence was detected in multitrack configuration using the Axiovert Zeiss LSM 510 META NLO multiphotonic microscope (available at the Montpellier RIO Imaging Platform; www.mri.cnrs.fr). The specificity of signal GFP was checked by spectral analysis. Images were edited using Zeiss LSM Image Browser software and assembled for figures in Adobe Photoshop 7.0.
The full-length cDNAs of AM1 and AM3 were amplified from cDNA of mature berries (Syrah) using high-fidelity Taq Polymerase (Advantage-HF2 PCR kit; Clontech) according to the manufacturer's instructions. The following primers were used: AM1 forward, 5'-GCGGCCGCATGGAGACGCCGCTGCTCAACAG-3', and AM1 reverse, 5'-GCGGCCGCTCAGACATCATCACTCGTCTTCTT-3'; AM3 forward, 5'-GCGGCCGCATGGAGACACCGCTGCTCAAGAGC-3', and AM3 reverse, 5'-GCGGCCGCTCATACATCATCGGCTTCAATCC-3'. The NotI restriction site, added in all of the primers, is underlined. The amplified cDNAs for AM1 and AM3 were cloned into the pGEM-T Easy vector (Promega), and the resulting plasmids were then sequenced using M13 forward and M13 reverse primers by commercial DNA sequencing service providers (GATC Biotech). PCR products of AM1 and AM3 were cloned into the NotI site of the plasmid pNEV-Ura (Sauer and Stolz, 1994
The isolated vesicle extracts were dissociated with SDS sample buffer containing 10% SDS and 10% mercaptoethanol and incubated in a 100°C bath for 3 min. The proteins were subjected to electrophoresis on 10% polyacrylamide gels in the presence of SDS. Western blotting of the vesicle extracts isolated was performed as described by Terrier et al. (1998)
Yeast membrane vesicles for in vitro transport studies were isolated essentially as described by Tommasini et al. (1996)
Uptake experiments to study the transport of anthocyanin substrates into membrane vesicles were performed using the rapid filtration technique with nitrocellulose filters (0.45-mm pore size; Millipore) as described by Marinova et al. (2007) Sequence data from this article have been deposited with the GenBank/EMBL data libraries under accession numbers FJ264202 (AM1) and FJ264203 (AM3).
The following materials are available in the online version of this article.
We especially thank G. Conejero for her helpful assistance for confocal microscopy. The A4 strain was introduced from the Centre Français des Bacteries Phytopathogènes d'Angers (http://www-intranet.angers.inra.fr). We thank C. Romieu for providing Gateway pH7FWG2-compatible cloning vector, F.X. Sauvage for technical support with western blotting, and I. Gil and G. Lopez for their assistance in the handling of the in vitro vegetal material. Received January 13, 2009; accepted March 16, 2009; published March 18, 2009.
1 This work was supported by the European Union program FLAVO 2005–513960.
2 Present address: Philip Morris International, R&D, Quai Jeanrenaud 56, 2000 Neuchâtel, Switzerland. The author responsible for distribution of materials integral to the findings presented in this article in accordance with the policy described in the Instructions for Authors (www.plantphysiol.org) is: Agnès Ageorges (ageorges{at}supagro.inra.fr).
[W] The online version of this article contains Web-only data.
[OA] Open Access articles can be viewed online without a subscription. www.plantphysiol.org/cgi/doi/10.1104/pp.109.135624 * Corresponding author; e-mail ageorges{at}supagro.inra.fr.
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