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First published online August 21, 2009; 10.1104/pp.109.142067 Plant Physiology 151:820-829 (2009) © 2009 American Society of Plant Biologists OPEN ACCESS ARTICLE
Extracellular DNA Is Required for Root Tip Resistance to Fungal Infection1,[W],[OA]Department of Plant Sciences, Division of Plant Pathology and Microbiology, University of Arizona, Tucson, Arizona 85713
Plant defense involves a complex array of biochemical interactions, many of which occur in the extracellular environment. The apical 1- to 2-mm root tip housing apical and root cap meristems is resistant to infection by most pathogens, so growth and gravity sensing often proceed normally even when other sites on the root are invaded. The mechanism of this resistance is unknown but appears to involve a mucilaginous matrix or "slime" composed of proteins, polysaccharides, and detached living cells called "border cells." Here, we report that extracellular DNA (exDNA) is a component of root cap slime and that exDNA degradation during inoculation by a fungal pathogen results in loss of root tip resistance to infection. Most root tips (>95%) escape infection even when immersed in inoculum from the root-rotting pathogen Nectria haematococca. By contrast, 100% of inoculated root tips treated with DNase I developed necrosis. Treatment with BAL31, an exonuclease that digests DNA more slowly than DNase I, also resulted in increased root tip infection, but the onset of infection was delayed. Control root tips or fungal spores treated with nuclease alone exhibited normal morphology and growth. Pea (Pisum sativum) root tips incubated with [32P]dCTP during a 1-h period when no cell death occurs yielded root cap slime containing 32P-labeled exDNA. Our results suggest that exDNA is a previously unrecognized component of plant defense, an observation that is in accordance with the recent discovery that exDNA from white blood cells plays a key role in the vertebrate immune response against microbial pathogens.
Root diseases caused by soil-borne plant pathogens are a perennial source of crop loss worldwide (Bruehl, 1986
As border cells detach from roots of cereals and legumes, a complex of more than 100 proteins, termed the root cap secretome, is synthesized and exported from living cells into the matrix ensheathing the root tip (Brigham et al., 1995
exDNA has long been known to be a component of slimy biological matrices ranging from purulent localized human infections to bacterial capsules, biofilms, and snail exudate (Sherry and Goeller, 1950
Loss of Root Tip Resistance to Infection in Response to in Situ DNase Treatment of Root Cap Slime
Deoxyribose previously was detected in root exudates of young monocot seedlings by chromatographic analysis (Vancura, 1964
Brinkmann et al. (2004)
One explanation for these results is that nuclease activity and/or the degradation of exDNA somehow results in plant cell death, allowing increased tissue ingress for the fungus. However, control experiments using DNase I treatment alone did not support this explanation: treatment with DNase I caused no root tip necrosis among treated roots (Fig. 2C; n > 100). At 48 h after treatment, the mean increase in root length, with and without DNase treatment of root tips, was 36 ± 8 mm (n = 18) and 34 ± 9 mm (n = 18), respectively. Border cell viability in uninoculated control roots was 95% ± 5%, with or without DNase treatment. Similar results were obtained when salmon sperm DNA or pea genomic DNA was added to roots and incubated with DNase I. These data suggested that it is the loss of the root cap slime exDNA, per se, that is responsible for loss of root tip resistance to infection when root tips are treated with DNase I. An alternative explanation for increased fungal infection of root tips in the presence of DNase I is that breakdown of exDNA within the surrounding root cap slime provides an enhanced nutrient resource for the fungus, fostering more rapid growth and development during early stages of the interaction. However, control experiments in which root mucilage collected from nuclease-treated roots was added to spores did not support this explanation: no increase in the rate of spore germination or hyphal growth was detected. Within 3 h of culturing spores with root exudates with and without DNase I treatment, spore germination rates were 78% ± 7% (n = 792) and 80% ± 4% (n = 853), respectively. During the 16-h course of incubation of spores with DNase I, measurements for hyphal growth in root exudates with and without DNase I treatment were A620 = 0.027 ± 0.016 (n = 20) and A620 = 0.028 ± 0.012 (n = 20), respectively, and were not statistically distinct. The same results observed in growth pouch experiments (Fig. 2) occurred when the experiment was carried out under alternative conditions, with excised root tips immersed directly within the treatment solutions in wells of a microtiter plate (Fig. 3 ; Supplemental Fig. S2). A reporter strain of N. haematococca expressing GFP was used to visualize early stages of infection (Supplemental Fig. S2). At 24 h after inoculation of root tips with fungal spores alone, hyphal growth was minimal (Supplemental Fig. S2A). At 48 h, hyphal growth remained dispersed away from the root tip and no strands of GFP-expressing hyphae could be seen in contact with root tissues (Supplemental Fig. S2C). In root tips coinoculated with N. haematococca and DNase I (Supplemental Fig. S2, B and D), proliferation of GFP-expressing hyphae (black arrows) on the surface of and penetrating within root tissue was evident within 24 h. As in the growth pouch assay, the incidence of root tip infection, manifested as cessation of growth and development of root tip necrosis, increased within 72 h from 3% ± 4% in the absence of DNase I to 100% of roots inoculated in the presence of DNase I (P < 0.0001). As in the growth pouch assay, adding salmon sperm DNA or pea genomic DNA did not alter the frequency of root tip infection, and no necrosis occurred on control roots treated with DNase I alone. Confocal microscopy revealed that in inoculated roots without DNase I treatment, growth of individual hyphae within 36 h was unbranched and limited to less than 100 µm in length (Fig. 3A), whereas growth in DNase I-treated samples hyphae was branched and more than 200 µm long (Fig. 3B). In DNase I-treated root tips, direct contact between proliferating fungal hyphae and the plant cell surface was evident (Fig. 3B). A profusion of border cells (Fig. 3B, white arrow) was apparent, and some fungal strands were seen to have penetrated the root epidermis (Fig. 3B, black arrows).
Slower DNA Digestion Is Correlated with Delayed Onset of Infection
The process of pea root infection by N. haematococca is a time-dependent process (Gunawardena and Hawes, 2002 First, BAL31, an exonuclease, was shown to require a significantly longer period of time to degrade pea DNA polymers than is required for DNase I under the conditions of our pea pathogenicity assay (Fig. 4). When a sample of pea genomic DNA was treated with DNase I under the conditions used in the root tip infection assay, as described above, the entire sample was degraded to fragments smaller than 250 bp within 2 h. By contrast, after 24 h of treatment with BAL31, the size range of pea genomic DNA remained within 250 bp to 6 kb.
If exDNA is required for root tip resistance to infection and its degradation underlies the observed changes in DNase I-treated root tip infection (Figs. 2 and 3; Supplemental Fig. S2), then the reduced rate of exDNA digestion seen with BAL31 (Fig. 4) would be predicted to result in delayed and/or reduced infection. We tested this prediction by treating inoculated roots with BAL31 instead of DNase I and found that this change was correlated with a 24-h delay in onset of necrosis and root tip destruction, compared with the response to DNase I. Most roots inoculated with N. haematococca (97% ± 3%) escaped necrosis, and roots with uninvaded root tips continued to grow in a manner indistinguishable from that of uninoculated control roots (Fig. 5A ). Root tips treated with BAL31 developed a tan discoloration within 72 h (Fig. 5B) but growth continued, and the degree of infection in BAL31-treated root tips was noticeably less severe than in root tips treated with DNase I (Fig. 5C). Only after 96 h did infection in roots treated with BAL31 and N. haematococca progress to blackened necrosis and cessation of growth. This would be the predicted result if intact DNA polymers within root cap slime are required for its observed effect on the root tip resistance.
DNA in Root Cap Slime
The observation that DNase added to root tips eliminates resistance to infection lends support to the hypothesis that DNA is present in the extracellular matrix and that its presence and structural integrity are required for root tip defense. The possibility that exDNA is a component of root cap slime was confirmed by electrophoretic display of exDNA extracted from pea root cap slime (Fig. 6
). In this study, the presence of DNA in the cell-free supernatant was estimated based on A260 and then was confirmed by analyzing a sample obtained using a standard phenol-chloroform protocol for DNA isolation (Sambrook et al., 1989
One possible source of exDNA is dead, dying, or lysed border cells that are released into slime upon immersion of root tips into water but were not detected by the methods used to control for such events. We estimated the number of cells that would be required to account for our results. In pea (cv Little Marvel), approximately 150 to 175 (5%) of the 3,500 ± 500 cells produced per root tip daily are nonviable when the radicle is 25 to 35 mm in length (Brigham et al., 1995
Previously, we showed that proteins of the root cap secretome are synthesized and secreted by living cells (Brigham et al., 1995
A hallmark of root tip resistance to invasion by fungal pathogens is a phenomenon in which the pathogen appears to be prevented from forming intimate contact with the root surface (Hawes et al., 1998
How exDNA might be delivered to the extracellular matrix of plants is unknown. Root caps are secretory organs, actively exporting the component polymers that make up root cap slime (Morré et al., 1967 Our study indicates that, in plants as well as animals, DNA can serve in critical biological roles other than as the language of inheritance.
Plant Material
Sterilization and germination of seeds of pea (Pisum sativum Little Marvel; Meyer Seed), border cell collection, and viability measurement were as described (Brigham et al., 1995
Border cells or root tips of intact seedlings were stained by DNA stain DAPI (Invitrogen) or SYTOX Green (Invitrogen) according to the manufacturer's instructions. Each treatment was replicated at least 10 times. Samples were viewed using an Olympus fluorescence microscope equipped with U-MWU2 (for DAPI excitation). The images were captured with an Olympus digital camera using MicroFire software.
Nectria haematococca culture, collection of spores, root tip inoculation, and evaluation of infection using a growth pouch assay (Caetano-Anollés et al., 1992
Root exudates and border cells were collected separately from root tips incubated in water and in DNase I in microtiter plate wells. Root exudates were separated from border cells by a pulse spin of the mixture at the lowest speed in a microcentrifuge. Both exudate samples were heated at 75°C for 10 min to inactivate DNase I activity. Subsequently, fungal spores (104 spores mL–1) were added to replicate exudate samples (at 200 µL) in independent microtiter plate wells. Five independent experiments, each with at least three replicate samples per treatment, were performed to examine the frequency of spore germination and fungal growth. Spore germination assays were assessed by direct counts of germinating spores, and fungal growth was assessed by measuring A620 using a microtiter plate scanner as described previously (Gunawardena et al., 2005 For confocal microscopy analysis of interactions between root tips and N. haematococca fungal hyphae, root tips were incubated with fungal spores in microtiter plate wells with or without DNase I. Treated root tips were then observed with a confocal laser scanning microscope (Leica SP5). GFP green fungal hyphae and red root autofluorescence images were obtained by dual excitation at 490 and 568 nm, respectively. One optical section (5 µm) is shown in Figure 3.
Root tip mucilage was collected from the supernatant of washed border cells (Brigham et al., 1995
For sequence analysis, exDNA (200 ng) was subjected to A-tailing using RedMix Taq DNA polymerase (Sigma-Aldrich) at 72°C for 20 min and then cloned into pGEM-T Easy vector (Promega) through direct cloning as described (Janska et al., 1998
Protoplasts of N. haematococca were prepared as described by Miao et al. (1991)
Ten seedlings, with border cells attached, were arranged radially in a sterile petri dish as described in previous assays for in vivo labeling of newly synthesized proteins (Brigham et al., 1995
The following materials are available in the online version of this article.
We thank Dr. Ravishankar Palanivelu for expertise with confocal microscopy experiments. Received May 26, 2009; accepted August 12, 2009; published August 21, 2009.
1 This work was supported by the College of Agriculture and Life Sciences, University of Arizona, and by the U.S. Department of Energy and the U.S. Department of Agriculture (grants awarded to M.C.H. and H.D.V., respectively). The author responsible for distribution of materials integral to the findings presented in this article in accordance with the policy described in the Instructions for Authors (www.plantphysiol.org) is: Martha C. Hawes (mhawes{at}u.arizona.edu).
[W] The online version of this article contains Web-only data.
[OA] Open Access articles can be viewed online without a subscription. www.plantphysiol.org/cgi/doi/10.1104/pp.109.142067 * Corresponding author; e-mail mhawes{at}u.arizona.edu.
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