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Published on February 17, 2006; 10.1104/pp.105.076059


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Received December 21, 2005
Returned for revision January 16, 2006
Accepted February 6, 2006

A transcriptome-based characterization of habituation in plant tissue culture

Melissa S. Pischke , Edward L. Huttlin , Adrian D. Hegeman , and Michael R. Sussman *

Department of Biochemistry, University of Wisconsin, Biotechnology Center, 425 Henry Mall, Madison, WI 53706

* Corresponding author; email: msussman{at}wisc.edu.

For the last 50 years, scientists have recognized that varying ratios of the plant hormones cytokinin and auxin induce plant cells to form particular tissues: undifferentiated callus, shoot structures, root structures, or a whole plant. Proliferation of undifferentiated callus tissue, greening, and the formation of shoot structures are all cytokinin-dependent processes. Habituation refers to a naturally occurring phenomenon whereby callus cultures, upon continued passage, lose their requirement for cytokinin. Earlier studies of calli derived from plants with a higher-than-normal cytokinin content, indicate that overproduction of cytokinin by the culture tissues is a possible explanation for this acquired cytokinin-independence. A transcriptome-based analysis of a well established habituated Arabidopsis thaliana cell culture line was undertaken, to explore genome-wide expression changes underlying the phenomenon of habituation. Altered levels of expression of the cytokinin receptor CRE1, as well as several other genes involved in cytokinin signaling, indicated that naturally-acquired deregulation of cytokinin-signaling components could play a previously unrecognized role in habituation. Up-regulation of several cytokinin oxidases, down-regulation of several known cytokinin-inducible genes, and a lack of regulation of the cytokinin synthases indicated that increases in hormone concentration may not be required for habituation. In addition up-regulation of, the homeodomain transcription factor FWA, transposon-related elements, and several DNA- and chromatin-modifying enzymes indicated that epigenetic changes contribute to the acquisition of cytokinin-habituation.




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