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Research ArticleBIOCHEMISTRY AND MACROMOLECULAR STRUCTURE
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3-Methylcrotonyl-Coenzyme A Carboxylase Is a Component of the Mitochondrial Leucine Catabolic Pathway in Plants

Marc D. Anderson, Ping Che, Jianping Song, Basil J. Nikolau, Eve Syrkin Wurtele
Marc D. Anderson
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Ping Che
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Jianping Song
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Basil J. Nikolau
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Eve Syrkin Wurtele
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Published December 1998. DOI: https://doi.org/10.1104/pp.118.4.1127

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  • Fig. 1.
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    Fig. 1.

    Potential metabolic functions of MCCase. MCCase catalyzes the ATP-dependent carboxylation of MC-CoA to form MG-CoA. This reaction may be required in the catabolism of Leu to acetoacetate and acetyl-CoA (reactions 1–6). MCCase may also function to convert mevalonate (MVA) to acetoacetate and acetyl-CoA (via isopentenyl pyrophosphate [IPP] and 3-methylcrotonoic acid) by the “mevalonate shunt.” A third function of MCCase may be as part of an isoprenoid catabolic pathway (via geranoyl-CoA). Reactions 4 to 6 are common to all three processes. The products of these processes, acetoacetate and acetyl-CoA, can be further metabolized to isoprenoids, polyketide derivatives (e.g. flavonoids, stilbenoids), and fatty acids, to Glc in tissues engaging the glyoxylate cycle, or respired to CO2 in the tricarboxylic acid cycle. The enzymes of Leu catabolism are: (a) branched-chain amino acid aminotransferase, (b) BCKDH complex, (c) branched-chain acyl-CoA dehydrogenase, (d) MCCase, (e) MG-CoA hydratase, and (f) HMG-CoA lyase. The asterisks denote the carbon atom expected to be radioactively labeled when NaH14CO3 is supplied for the MCCase reaction.

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    Fig. 2.

    MCCase activity and the accumulation of the biotin-containing subunit of MCCase in soybean seedlings at 13 DAP. A, Organs of a soybean seedling. B, MCCase activity (mean of five experiments ± se). C, Western blot probed with antiserum to detect the biotin-containing subunit of MCCase. D, Western blot identical to that shown in C, but instead probed with125I-streptavidin to detect the biotin prosthetic group on the biotin-containing subunit of MCCase. In C and D protein samples were loaded on the basis of equal MCCase activity (0.1 nmol/min) to detect differences in the catalytic efficiency of the enzyme among organs. The data presented in C and D were gathered from a single experiment; five replicates of this experiment gave similar results.

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    Fig. 3.

    Effect of cotyledon development on MCCase activity and Leu, protein, and chlorophyll accumulation. A, Chlorophyll and total protein contents. B, MCCase activity and free Leu content. C, Western blot probed with antiserum to detect the biotin-containing subunit of MCCase. D, Western blot identical to that shown in C, but instead probed with 125I-streptavidin to detect the biotin prosthetic group on the biotin-containing subunit of MCCase. In C and D protein samples were loaded on the basis of equal MCCase activity (0.1 nmol/min) to detect differences in the catalytic efficiency of the enzyme during cotyledon development. The data presented in A and B are means ± se from three replicates. The data presented in C and D were gathered from a single experiment; three replicates of this experiment gave similar results.

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    Fig. 5.

    Kinetics of the incorporation of radioactively labeled bicarbonate into acid-stable metabolites by mitochondrial extracts in the presence of MC-CoA and cofactors. Time course of the incorporation of radioactivity into acid-stable products (A), MG-CoA (B), HMG-CoA (C), or acetoacetate (D). Incubations were carried out either without or with 10 μg of avidin (to inhibit MCCase activity), which was added 2.5 min after the start of the reaction (arrows). Each time point is an independent sample and represents two replicates. Because of the rapid incorporation of NaH14CO3, the background radioactivity was impossible to obtain. Therefore, the 0-min time point was derived from samples incubated for 1 min in the presence of 10 μg of avidin.

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    Fig. 4.

    Steady-state levels of the mRNA coding for the biotin-containing subunit of MCCase in organs of soybean seedlings at 13 DAP and during cotyledon development. Ethidium bromide-stained agarose gel containing approximately equal amounts (20 μg) of RNA, isolated from various organs (A) or from cotyledons at different stages of development (B). Northern blot depicting the accumulation of the mRNA coding for the biotin-containing subunit of MCCase in various organs (C) or in cotyledons at different stages of development (D). The data presented in this figure were gathered from a single experiment. Five replicates (A and C) and three replicates (B and D) of these experiments gave similar results.

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    Fig. 6.

    Separation of radioactive metabolites by HPLC. Representative chromatograms depicting metabolites arising from the catabolism of MC-CoA by mitochondrial extracts in the presence of NaH14CO3 and cofactors after 5-min (A) or 45-min (B) incubations. After 5 min [14C]MG-CoA and [14C]HMG-CoA were at similar levels and [14C]acetoacetate was barely detectable. After 45 min [14C]HMG-CoA had exceeded [14C]MG-CoA and [14C]acetoacetate had increased. Representative chromatograms depicting metabolites arising from the catabolism of [U-14C]Leu by mitochondrial extracts in the presence of 10 μg of avidin after a 2-h (C) or 6-h (D) incubation. After 2 h α-[14C]-KIC accumulated to a substantial level and [14C]IV-CoA accumulation was in progress. After 6 h the level of α-[14C]-KIC diminished, indicating that the rate of its disappearance had exceeded its formation. [14C]IV-CoA continued to accumulate and [14C]MC-CoA appeared. [14C]Isovaleric acid was likely a decarboxylation product of α-[14C]-KIC, possibly arising nonenzymatically.

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    Table I.

    MCCase activity in developing soybean organs

    OrganDevelopmental StageMCCase Activity-a
    DAF -b nmol min−1mg−1 protein
    Developing seeds206.9
    309.9
    405.6
    503.3
    Dry seeds4.3
    Seed pod coat102.5
    205.0
    306.0
    403.3
    502.3
    600.8
    Reproductive leaf-c 101.2
    201.3
    301.3
    401.3
    500.02
    Young leaf-d 3.4
    Mature leaf-e 2.7
    • ↵F0-a Average of three replicates. se = 0.7 nmol min−1mg−1protein.

    • ↵F0-b Days after flowering.

    • ↵F0-c Reproductive leaf is the leaf next to a seed pod and is staged relative to flowering.

    • ↵F0-d Young leaf is the first true leaf of 14-d-old plants.

    • ↵F0-e Mature leaf is the first true leaf of 30-d-old plants, before flowering.

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    Table II.

    Mitochondrial metabolism of α-KIC and IV-CoA

    SubstrateIncubation DurationAcid-Stable MetabolitesMG-CoAHMG-CoA
    −Avidin+Avidin−Avidin+Avidin−Avidin+Avidin
    min dpm (×103)/mg protein %
    IV-CoA147.8  (+10.3)–ND1-a –ND–
    580.3  (+17.3)64.6  (+13.9)NDNDNDND
    20106.2  (+22.8)64.9  (+13.9)NDND100ND
    60166.4  (+35.8)77.2  (+16.6)17ND83ND
    α-KIC149.9  (+10.7)–ND–ND–
    563.7  (+13.7)64.5  (+13.9)NDNDNDND
    2088.5  (+19.0)67.1  (+14.4)NDND100ND
    60146.3  (+31.4)100.8  (+21.5)NDND100ND

    Mitochondrial extracts were incubated with α-KIC or IV-CoA, and their conversion to MC-CoA was monitored by the MCCase-catalyzed (avidin-sensitive) incorporation of radioactivity from NaH14CO3 into acid-stable products, which were identified as [14C]MG-CoA or [14C]HMG-CoA by HPLC analysis. The amount of radioactivity present in each metabolite is expressed as a percentage of the total radioactivity recovered during HPLC fractionation, discounting the residual [14C]bicarbonate peak. For acid-stable metabolites, the variance was dependent on the mean and a log transformation was used. Consequently, 1 se above the mean (shown) was greater than 1 se below the mean (not shown).

      • ↵F1-a ND, Not detected.

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      Table III.

      Catabolism of Leu by mitochondrial extracts

      Additions/OmissionsIncubation Durationα-KICIV-CoAMC-CoA
      h dpm (×103)/mg protein
      None0.33256.4  (+45.1)ND2-a ND
      1585.3  (+102.9)19.7  (+2.3)ND
      21303.2  (+229.1)110.5  (+13.0)ND
      4697.6  (+122.7)426.5  (+50.2)8.6  (+4.2)
      6362.1  (+63.7)508.6  (+59.8)29.9  (+14.4)
      −α-KG289.4  (+15.7)NDND
      −CoA21214.7  (+213.6)NDND
      +1 mm α-KIC21099.0  (+193.2)NDND
      41835.0  (+322.6)NDND
      62270.3  (+399.1)NDND
      +Avidin2936.8  (+164.7)154.3  (+18.2)ND
      4800.7  (+139.9)420.6  (+49.5)51.4  (+24.7)
      6602.4  (+105.9)436.8  (+51.4)71.7  (+34.5)

      Mitochondrial extracts were incubated with [U-14C]Leu and cofactors for various lengths of time and the resulting radioactive products were analyzed by HPLC. Additional reactions were also conducted without added α-ketoglutarate (α-KG) or CoA, or with the addition of 1 mm nonradioactive α-KIC or 10 μg of avidin. α-KG is required for the transamination of Leu; CoA is required for the decarboxylation and activation of α-KIC in the BCKDH reaction; nonradioactive α-KIC inhibits further metabolism of α-[14C]KIC by competition; and avidin inhibits MCCase.se values are reported as in Table II.

        • ↵F2-a ND, Not detected.

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      3-Methylcrotonyl-Coenzyme A Carboxylase Is a Component of the Mitochondrial Leucine Catabolic Pathway in Plants
      Marc D. Anderson, Ping Che, Jianping Song, Basil J. Nikolau, Eve Syrkin Wurtele
      Plant Physiology Dec 1998, 118 (4) 1127-1138; DOI: 10.1104/pp.118.4.1127

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      3-Methylcrotonyl-Coenzyme A Carboxylase Is a Component of the Mitochondrial Leucine Catabolic Pathway in Plants
      Marc D. Anderson, Ping Che, Jianping Song, Basil J. Nikolau, Eve Syrkin Wurtele
      Plant Physiology Dec 1998, 118 (4) 1127-1138; DOI: 10.1104/pp.118.4.1127
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