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OtherBIOINFORMATICS
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GENEVESTIGATOR. Arabidopsis Microarray Database and Analysis Toolbox

Philip Zimmermann, Matthias Hirsch-Hoffmann, Lars Hennig, Wilhelm Gruissem
Philip Zimmermann
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Matthias Hirsch-Hoffmann
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Lars Hennig
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Wilhelm Gruissem
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Published September 2004. DOI: https://doi.org/10.1104/pp.104.046367

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  • CORRECTION - December 01, 2004
  • © 2004 American Society of Plant Biologists

Abstract

High-throughput gene expression analysis has become a frequent and powerful research tool in biology. At present, however, few software applications have been developed for biologists to query large microarray gene expression databases using a Web-browser interface. We present GENEVESTIGATOR, a database and Web-browser data mining interface for Affymetrix GeneChip data. Users can query the database to retrieve the expression patterns of individual genes throughout chosen environmental conditions, growth stages, or organs. Reversely, mining tools allow users to identify genes specifically expressed during selected stresses, growth stages, or in particular organs. Using GENEVESTIGATOR, the gene expression profiles of more than 22,000 Arabidopsis genes can be obtained, including those of 10,600 currently uncharacterized genes. The objective of this software application is to direct gene functional discovery and design of new experiments by providing plant biologists with contextual information on the expression of genes. The database and analysis toolbox is available as a community resource at https://www.genevestigator.ethz.ch.

  • Received May 14, 2004.
  • Revised July 12, 2004.
  • Accepted July 16, 2004.
  • Published September 16, 2004.
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GENEVESTIGATOR. Arabidopsis Microarray Database and Analysis Toolbox
Philip Zimmermann, Matthias Hirsch-Hoffmann, Lars Hennig, Wilhelm Gruissem
Plant Physiology Sep 2004, 136 (1) 2621-2632; DOI: 10.1104/pp.104.046367

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GENEVESTIGATOR. Arabidopsis Microarray Database and Analysis Toolbox
Philip Zimmermann, Matthias Hirsch-Hoffmann, Lars Hennig, Wilhelm Gruissem
Plant Physiology Sep 2004, 136 (1) 2621-2632; DOI: 10.1104/pp.104.046367
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Plant Physiology: 136 (1)
Plant Physiology
Vol. 136, Issue 1
Sep 2004
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