Plant Physiology: 136 (2)

Oct 2004

ON THE INSIDE

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On the Inside
Peter V. Minorsky

Plant Physiol. Oct 2004, 136 (2) 3001-3002; DOI: https://doi.org/10.1104/pp.104.900123

STATE OF THE FIELD

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Ethylene Biology. More Than a Gas
Caren Chang, Anthony B. Bleecker

Plant Physiol. Oct 2004, 136 (2) 2895-2899; DOI: https://doi.org/10.1104/pp.104.900122

UPDATE ON CELL WALL NAVIGATOR DATABASE

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The Cell Wall Navigator Database. A Systems-Based Approach to Organism-Unrestricted Mining of Protein Families Involved in Cell Wall Metabolism
Thomas Girke, Josh Lauricha, Hua Tran, Kenneth Keegstra, Natasha Raikhel

Plant Physiol. Oct 2004, 136 (2) 3003-3008; DOI: https://doi.org/10.1104/pp.104.049965

BIOINFORMATICS

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Maximizing the Efficacy of SAGE Analysis Identifies Novel Transcripts in Arabidopsis
Stephen J. Robinson, Dustin J. Cram, Christopher T. Lewis, Isobel A.P. Parkin

Plant Physiol. Oct 2004, 136 (2) 3223-3233; DOI: https://doi.org/10.1104/pp.104.043406

GENOME ANALYSIS

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Transcriptional Similarities, Dissimilarities, and Conservation of cis-Elements in Duplicated Genes of Arabidopsis
Georg Haberer, Tobias Hindemitt, Blake C. Meyers, Klaus F.X. Mayer

Plant Physiol. Oct 2004, 136 (2) 3009-3022; DOI: https://doi.org/10.1104/pp.104.046466
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Utility of Different Gene Enrichment Approaches Toward Identifying and Sequencing the Maize Gene Space
Nathan Michael Springer, Xiequn Xu, W. Brad Barbazuk

Plant Physiol. Oct 2004, 136 (2) 3023-3033; DOI: https://doi.org/10.1104/pp.104.043323

BIOCHEMICAL PROCESSES AND MACROMOLECULAR STRUCTURES

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Structure and Mutational Analysis of a Plant Mitochondrial Nucleoside Diphosphate Kinase. Identification of Residues Involved in Serine Phosphorylation and Oligomerization
Monika Johansson, Alasdair MacKenzie-Hose, Inger Andersson, Carina Knorpp

Plant Physiol. Oct 2004, 136 (2) 3034-3042; DOI: https://doi.org/10.1104/pp.104.044040
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Quantification of Compartmented Metabolic Fluxes in Developing Soybean Embryos by Employing Biosynthetically Directed Fractional ¹³C Labeling, Two-Dimensional [¹³C, ¹H] Nuclear Magnetic Resonance, and Comprehensive Isotopomer Balancing
Ganesh Sriram, D. Bruce Fulton, Vidya V. Iyer, Joan Marie Peterson, Ruilian Zhou, Mark E. Westgate, Martin H. Spalding, Jacqueline V. Shanks

Plant Physiol. Oct 2004, 136 (2) 3043-3057; DOI: https://doi.org/10.1104/pp.104.050625
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The Arabidopsis phenylalanine insensitive growth Mutant Exhibits a Deregulated Amino Acid Metabolism
Lars M. Voll, Erin E. Allaire, Gabriele Fiene, Andreas P.M. Weber

Plant Physiol. Oct 2004, 136 (2) 3058-3069; DOI: https://doi.org/10.1104/pp.104.047506
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Cloning and Characterization of Red Clover Polyphenol Oxidase cDNAs and Expression of Active Protein in Escherichia coli and Transgenic Alfalfa
Michael L. Sullivan, Ronald D. Hatfield, Sharon L. Thoma, Deborah A. Samac

Plant Physiol. Oct 2004, 136 (2) 3234-3244; DOI: https://doi.org/10.1104/pp.104.047449

BIOENERGETICS AND PHOTOSYNTHESIS

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Activation of Photosynthesis and Resistance to Photoinhibition in Cyanobacteria within Biological Desert Crust
Yariv Harel, Itzhak Ohad, Aaron Kaplan

Plant Physiol. Oct 2004, 136 (2) 3070-3079; DOI: https://doi.org/10.1104/pp.104.047712
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Respiratory Carbon Metabolism following Illumination in Intact French Bean Leaves Using ¹³C/¹²C Isotope Labeling
Salvador Nogués, Guillaume Tcherkez, Gabriel Cornic, Jaleh Ghashghaie

Plant Physiol. Oct 2004, 136 (2) 3245-3254; DOI: https://doi.org/10.1104/pp.104.048470

CELL BIOLOGY AND SIGNAL TRANSDUCTION

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Patellin1, a Novel Sec14-Like Protein, Localizes to the Cell Plate and Binds Phosphoinositides
T. Kaye Peterman, Yamini M. Ohol, Lisa J. McReynolds, Elizabeth J. Luna

Plant Physiol. Oct 2004, 136 (2) 3080-3094; DOI: https://doi.org/10.1104/pp.104.045369
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The gravitropism defective 2 Mutants of Arabidopsis Are Deficient in a Protein Implicated in Endocytosis in Caenorhabditis elegans
Rebecca A. Silady, Takehide Kato, Wolfgang Lukowitz, Patrick Sieber, Masao Tasaka, Chris R. Somerville

Plant Physiol. Oct 2004, 136 (2) 3095-3103; DOI: https://doi.org/10.1104/pp.104.050583
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Molecular and Functional Characterization of a Family of Amino Acid Transporters from Arabidopsis
Yan-Hua Su, Wolf B. Frommer, Uwe Ludewig

Plant Physiol. Oct 2004, 136 (2) 3104-3113; DOI: https://doi.org/10.1104/pp.104.045278
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Biochemical Characterization of the Tobacco 42-kD Protein Kinase Activated by Osmotic Stress
Anna Kelner, Izabela Pękala, Szymon Kaczanowski, Grażyna Muszyńska, D. Grahame Hardie, Grażyna Dobrowolska

Plant Physiol. Oct 2004, 136 (2) 3255-3265; DOI: https://doi.org/10.1104/pp.104.046151
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The Mechanics of Surface Expansion Anisotropy in Medicago truncatula Root Hairs
Jacques Dumais, Sharon R. Long, Sidney L. Shaw

Plant Physiol. Oct 2004, 136 (2) 3266-3275; DOI: https://doi.org/10.1104/pp.104.043752

DEVELOPMENT AND HORMONE ACTION

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Production of Reactive Oxygen Intermediates (O₂^˙−, H₂O₂, and ^˙OH) by Maize Roots and Their Role in Wall Loosening and Elongation Growth
Anja Liszkay, Esther van der Zalm, Peter Schopfer

Plant Physiol. Oct 2004, 136 (2) 3114-3123; DOI: https://doi.org/10.1104/pp.104.044784
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Overexpression of Constitutive Differential Growth 1 Gene, Which Encodes a RLCKVII-Subfamily Protein Kinase, Causes Abnormal Differential and Elongation Growth after Organ Differentiation in Arabidopsis
Hideki Muto, Naoto Yabe, Tadao Asami, Koji Hasunuma, Kotaro T. Yamamoto

Plant Physiol. Oct 2004, 136 (2) 3124-3133; DOI: https://doi.org/10.1104/pp.104.046805

ENVIRONMENTAL STRESS AND ADAPTATION

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Uncoupling the Effects of Abscisic Acid on Plant Growth and Water Relations. Analysis of sto1/nced3, an Abscisic Acid-Deficient but Salt Stress-Tolerant Mutant in Arabidopsis
Bruno Ruggiero, Hisashi Koiwa, Yuzuki Manabe, Tanya M. Quist, Gunsu Inan, Franco Saccardo, Robert J. Joly, Paul M. Hasegawa, Ray A. Bressan, Albino Maggio

Plant Physiol. Oct 2004, 136 (2) 3134-3147; DOI: https://doi.org/10.1104/pp.104.046169
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Galactinol synthase1. A Novel Heat Shock Factor Target Gene Responsible for Heat-Induced Synthesis of Raffinose Family Oligosaccharides in Arabidopsis
Tressa Jacob Panikulangara, Gabriele Eggers-Schumacher, Markus Wunderlich, Harald Stransky, Fritz Schöffl

Plant Physiol. Oct 2004, 136 (2) 3148-3158; DOI: https://doi.org/10.1104/pp.104.042606
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Heavy Metal Stress. Activation of Distinct Mitogen-Activated Protein Kinase Pathways by Copper and Cadmium
Claudia Jonak, Hirofumi Nakagami, Heribert Hirt

Plant Physiol. Oct 2004, 136 (2) 3276-3283; DOI: https://doi.org/10.1104/pp.104.045724
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Characterization of the Silicon Uptake System and Molecular Mapping of the Silicon Transporter Gene in Rice
Jian Feng Ma, Namiki Mitani, Sakiko Nagao, Saeko Konishi, Kazunori Tamai, Takashi Iwashita, Masahiro Yano

Plant Physiol. Oct 2004, 136 (2) 3284-3289; DOI: https://doi.org/10.1104/pp.104.047365
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Gene Expression Profiling Reflects Physiological Processes in Salt Acclimation of Synechocystis sp. Strain PCC 6803
Kay Marin, Yu Kanesaki, Dmitry A. Los, Norio Murata, Iwane Suzuki, Martin Hagemann

Plant Physiol. Oct 2004, 136 (2) 3290-3300; DOI: https://doi.org/10.1104/pp.104.045047
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Carbon Status Constrains Light Acclimation in the Cyanobacterium Synechococcus elongatus
Tyler D.B. MacKenzie, Robert A. Burns, Douglas A. Campbell

Plant Physiol. Oct 2004, 136 (2) 3301-3312; DOI: https://doi.org/10.1104/pp.104.047936
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Bacteroid Proline Catabolism Affects N₂ Fixation Rate of Drought-Stressed Soybeans
Jason Curtis, Georgia Shearer, Daniel H. Kohl

Plant Physiol. Oct 2004, 136 (2) 3313-3318; DOI: https://doi.org/10.1104/pp.104.044024
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Crosslinking of Ribosomal Proteins to RNA in Maize Ribosomes by UV-B and Its Effects on Translation
Paula Casati, Virginia Walbot

Plant Physiol. Oct 2004, 136 (2) 3319-3332; DOI: https://doi.org/10.1104/pp.104.047043

GENETICS, GENOMICS, AND MOLECULAR EVOLUTION

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Expression Profiling in Medicago truncatula Identifies More Than 750 Genes Differentially Expressed during Nodulation, Including Many Potential Regulators of the Symbiotic Program
Fikri El Yahyaoui, Helge Küster, Besma Ben Amor, Natalija Hohnjec, Alfred Pühler, Anke Becker, Jérôme Gouzy, Tatiana Vernié, Clare Gough, Andreas Niebel, Laurence Godiard, Pascal Gamas

Plant Physiol. Oct 2004, 136 (2) 3159-3176; DOI: https://doi.org/10.1104/pp.104.043612
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Comparative Sequence Analysis of the Region Harboring the Hardness Locus in Barley and Its Colinear Region in Rice
Katherine S. Caldwell, Peter Langridge, Wayne Powell

Plant Physiol. Oct 2004, 136 (2) 3177-3190; DOI: https://doi.org/10.1104/pp.104.044081
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Starch Division and Partitioning. A Mechanism for Granule Propagation and Maintenance in the Picophytoplanktonic Green Alga Ostreococcus tauri
Jean-Philippe Ral, Evelyne Derelle, Conchita Ferraz, Fabrice Wattebled, Benoit Farinas, Florence Corellou, Alain Buléon, Marie-Christine Slomianny, David Delvalle, Christophe d'Hulst, Stephane Rombauts, Hervé Moreau, Steven Ball

Plant Physiol. Oct 2004, 136 (2) 3333-3340; DOI: https://doi.org/10.1104/pp.104.044131
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Genetic Control of Storage Oil Synthesis in Seeds of Arabidopsis
Douglas H. Hobbs, John E. Flintham, Matthew J. Hills

Plant Physiol. Oct 2004, 136 (2) 3341-3349; DOI: https://doi.org/10.1104/pp.104.049486

PLANTS INTERACTING WITH OTHER ORGANISMS

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Infection-Related Activation of the cg12 Promoter Is Conserved between Actinorhizal and Legume-Rhizobia Root Nodule Symbiosis
Sergio Svistoonoff, Laurent Laplaze, Jingsi Liang, Ana Ribeiro, Manuela C. Gouveia, Florence Auguy, Pedro Fevereiro, Claudine Franche, Didier Bogusz

Plant Physiol. Oct 2004, 136 (2) 3191-3197; DOI: https://doi.org/10.1104/pp.104.048967

WHOLE PLANT AND ECOPHYSIOLOGY

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Measurement and Interpretation of the Oxygen Isotope Composition of Carbon Dioxide Respired by Leaves in the Dark
Lucas A. Cernusak, Graham D. Farquhar, S. Chin Wong, Hilary Stuart-Williams

Plant Physiol. Oct 2004, 136 (2) 3350-3363; DOI: https://doi.org/10.1104/pp.104.040758
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Metabolic Profiling of the Sink-to-Source Transition in Developing Leaves of Quaking Aspen
Mijeong Lee Jeong, Hongying Jiang, Huann-Sheng Chen, Chung-Jui Tsai, Scott A. Harding

Plant Physiol. Oct 2004, 136 (2) 3364-3375; DOI: https://doi.org/10.1104/pp.104.044776

PLANT NUTRITION

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Arsenic Hyperaccumulation in Gametophytes of Pteris vittata. A New Model System for Analysis of Arsenic Hyperaccumulation
Luke Gumaelius, Brett Lahner, David E. Salt, Jo Ann Banks

Plant Physiol. Oct 2004, 136 (2) 3198-3208; DOI: https://doi.org/10.1104/pp.104.044073
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Isolation and Characterization of an Arabidopsis Mutant That Overaccumulates O-Acetyl-l-Ser
Naoko Ohkama-Ohtsu, Ichiro Kasajima, Toru Fujiwara, Satoshi Naito

Plant Physiol. Oct 2004, 136 (2) 3209-3222; DOI: https://doi.org/10.1104/pp.104.047068
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Boron Tolerance in Barley Is Mediated by Efflux of Boron from the Roots
Julie E. Hayes, Robert J. Reid

Plant Physiol. Oct 2004, 136 (2) 3376-3382; DOI: https://doi.org/10.1104/pp.103.037028
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Use of Phenylboronic Acids to Investigate Boron Function in Plants. Possible Role of Boron in Transvacuolar Cytoplasmic Strands and Cell-to-Wall Adhesion
Elias Bassil, Hening Hu, Patrick H. Brown

Plant Physiol. Oct 2004, 136 (2) 3383-3395; DOI: https://doi.org/10.1104/pp.104.040527
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Regulation of Sulfate Uptake and Expression of Sulfate Transporter Genes in Brassica oleracea as Affected by Atmospheric H₂S and Pedospheric Sulfate Nutrition
Peter Buchner, C. Elisabeth E. Stuiver, Sue Westerman, Markus Wirtz, Rüdiger Hell, Malcolm J. Hawkesford, Luit J. De Kok

Plant Physiol. Oct 2004, 136 (2) 3396-3408; DOI: https://doi.org/10.1104/pp.104.046441

RESEARCH ARTICLES

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The Central Role of PhEIN2 in Ethylene Responses throughout Plant Development in Petunia
Kenichi Shibuya, Kristin G. Barry, Joseph A. Ciardi, Holly M. Loucas, Beverly A. Underwood, Saeid Nourizadeh, Joseph R. Ecker, Harry J. Klee, David G. Clark

Plant Physiol. Oct 2004, 136 (2) 2900-2912; DOI: https://doi.org/10.1104/pp.104.046979
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Arabidopsis Seedling Growth Response and Recovery to Ethylene. A Kinetic Analysis
Brad M. Binder, Ronan C. O'Malley, Wuyi Wang, Jeannette M. Moore, Brian M. Parks, Edgar P. Spalding, Anthony B. Bleecker

Plant Physiol. Oct 2004, 136 (2) 2913-2920; DOI: https://doi.org/10.1104/pp.104.050369
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Short-Term Growth Responses to Ethylene in Arabidopsis Seedlings Are EIN3/EIL1 Independent
Brad M. Binder, Laura A. Mortimore, Anna N. Stepanova, Joseph R. Ecker, Anthony B. Bleecker

Plant Physiol. Oct 2004, 136 (2) 2921-2927; DOI: https://doi.org/10.1104/pp.104.050393
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Interactions between Ethylene and Gibberellins in Phytochrome-Mediated Shade Avoidance Responses in Tobacco
Ronald Pierik, Mieke L.C. Cuppens, Laurentius A.C.J. Voesenek, Eric J.W. Visser

Plant Physiol. Oct 2004, 136 (2) 2928-2936; DOI: https://doi.org/10.1104/pp.104.045120
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Airborne Ethylene May Alter Antioxidant Protection and Reduce Tolerance of Holm Oak to Heat and Drought Stress
Sergi Munné-Bosch, Josep Peñuelas, Dolores Asensio, Joan Llusià

Plant Physiol. Oct 2004, 136 (2) 2937-2947; DOI: https://doi.org/10.1104/pp.104.050005
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The Roles of Ethylene, Auxin, Abscisic Acid, and Gibberellin in the Hyponastic Growth of Submerged Rumex palustris Petioles
Marjolein C.H. Cox, Joris J. Benschop, Robert A.M. Vreeburg, Cornelis A.M. Wagemaker, Thomas Moritz, Anton J.M. Peeters, Laurentius A.C.J. Voesenek

Plant Physiol. Oct 2004, 136 (2) 2948-2960; DOI: https://doi.org/10.1104/pp.104.049197
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Requirement of the Histidine Kinase Domain for Signal Transduction by the Ethylene Receptor ETR1
Xiang Qu, G. Eric Schaller

Plant Physiol. Oct 2004, 136 (2) 2961-2970; DOI: https://doi.org/10.1104/pp.104.047126
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Evidence for Serine/Threonine and Histidine Kinase Activity in the Tobacco Ethylene Receptor Protein NTHK2
Zhi-Gang Zhang, Hua-Lin Zhou, Tao Chen, Yan Gong, Wan-Hong Cao, Yu-Jun Wang, Jin-Song Zhang, Shou-Yi Chen

Plant Physiol. Oct 2004, 136 (2) 2971-2981; DOI: https://doi.org/10.1104/pp.103.034686
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Unique and Overlapping Expression Patterns among the Arabidopsis 1-Amino-Cyclopropane-1-Carboxylate Synthase Gene Family Members
Atsunari Tsuchisaka, Athanasios Theologis

Plant Physiol. Oct 2004, 136 (2) 2982-3000; DOI: https://doi.org/10.1104/pp.104.049999

CORRECTIONS

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CORRECTION
Plant Physiol. Oct 2004, 136 (2) 3409; DOI: https://doi.org/10.1104/pp.104.900126

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Table of Contents

ON THE INSIDE

STATE OF THE FIELD

UPDATE ON CELL WALL NAVIGATOR DATABASE

BIOINFORMATICS

GENOME ANALYSIS

BIOCHEMICAL PROCESSES AND MACROMOLECULAR STRUCTURES

BIOENERGETICS AND PHOTOSYNTHESIS

CELL BIOLOGY AND SIGNAL TRANSDUCTION

DEVELOPMENT AND HORMONE ACTION

ENVIRONMENTAL STRESS AND ADAPTATION

GENETICS, GENOMICS, AND MOLECULAR EVOLUTION

PLANTS INTERACTING WITH OTHER ORGANISMS

WHOLE PLANT AND ECOPHYSIOLOGY

PLANT NUTRITION

RESEARCH ARTICLES

CORRECTIONS

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