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Research ArticleENVIRONMENTAL STRESS AND ADAPTATION
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Exploring the Temperature-Stress Metabolome of Arabidopsis

Fatma Kaplan, Joachim Kopka, Dale W. Haskell, Wei Zhao, K. Cameron Schiller, Nicole Gatzke, Dong Yul Sung, Charles L. Guy
Fatma Kaplan
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Joachim Kopka
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Dale W. Haskell
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Wei Zhao
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K. Cameron Schiller
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Nicole Gatzke
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Dong Yul Sung
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Charles L. Guy
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Published December 2004. DOI: https://doi.org/10.1104/pp.104.052142

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    Figure 1.

    Kinetics of acquired thermotolerance and freezing tolerance induction in Arabidopsis. A, HS; B, CS. White symbol in B represents 24-h DA at 20°C after 96 h of CS. Error bars represent the 95% confidence interval of the mean. Electrolyte leakage assays were used to determine temperature causing lethal injury for acquired thermotolerance and acquired freezing tolerance.

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    Figure 2.

    Principal component analysis. Component 1 (differential response to HS and CS) and Component 2 (differential response with respect to the time series) are plotted on the axes. All samples of this investigation are represented. CS samples (black), HS samples (white), untreated control samples (black), DA samples (gray), first experiment (triangles), and second experiment (circles) are shown. Time points are indicated within the graph.

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    Figure 3.

    Representative HS metabolite responses. A to D demonstrate early; E, intermediate; F, late sustained and transient increase patterns. NA followed by number is an unidentified MST. If a tentative identification is available, MST is characterized with an asterisk.

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    Figure 4.

    Representative CS metabolite responses. A to C demonstrate early; D to F, intermediate; G and H, late sustained and transient increase patterns. NA followed by number is an unidentified MST. If a tentative identification is available, MST is characterized with an asterisk.

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    Figure 5.

    Proportionality of metabolite responses to temperature shock. A total of 497 metabolites and MSTs were detected by GC-MS.

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    Table I.

    Influence of temperature shock on metabolite levels

    HS-Specific ResponseDifferential Response
    MetabolitesHSCSMetabolitesHSCS
    UracilINPhosphoric acidDI
    d-(−)-Quinic acidINGlcDI
    13 MSTsINGlc-6-PDI
    Citramalic acidDN[798; Fru]DI
    3 MSTsDN3 MSTsDI
    CS-Specific ResponseCommon Response
    AllantoinNI2-Ketoglutaric acidII
    cis-Aconitic acidNIβ-Ala*II
    cis-Ferulic acidNICitric acid*II
    cis-Sinapic acidNIErythritolII
    Fru-6-PNIErythronic acidII
    GlcUANIFru*II
    Glyceric acid-3-PNIFumaric acidII
    l-(+)-Ascorbic acid*NIGABA*II
    l-Arg*NIGalactinol*II
    l-Cys*NIGalactonic acidII
    l-Glu*NIGlycerol*II
    l-Gln*NIGly*II
    l-Phe*NIl-Ala*II
    l-Pro*NIl-Asn*II
    l-Ser*NIl-Glycerol-3-PII
    l-Trp*NIl-HomoSer*II
    Maleic acidNIl-Ile*II
    Man-6-PNIl-Leu*II
    NorvalineNIl-Lys*II
    O-Acetyl-L-SerNIl-Met*II
    Octadecanoic acidNIl-Thr*II
    PyroGluNIl-Tyr*II
    Sorbitol*NIl-Valine*II
    trans-Sinapic acidNIMalic acid*II
    [497; Gluconic acid-1,4-lactone]NIMaltose*II
    [529; Indole-3-acetic acid]NIMelibiose*II
    [539; Phe]NIMyoinositol-PII
    [612; Pro]NIOrnII
    [614; GlnNIPutrescine*II
    [640; Putrescine]NIRaffinose*II
    [734; l-Asp]NIRiboseII
    [861; Glucopyranose]NISA*II
    [889; 1,6-AnhydroGlc]NISuccinic acidII
    [949; Glucopyranose]NISuc*II
    106 MSTsNIThreonic acidII
    Isocitric acidNDThreonic acid-1,4-lactoneII
    Lactic acidNDTrehalose*II
    44 MSTsNDTyramineII
    Differential ResponseXylII
    AraID[721; Glucaric acid]II
    ManID[732; Pipecolic acid]II
    myo-inositolID[861; Digalactosylglycerol]II
    Shikimic acidID44 MSTsII
    [852; Aminomalonic acid]IDDehydroascorbic acid dimerDD
    [708; Ribonic acid]IDGlyceric acidDD
    [846; Xylitol]IDl-AspDD
    18 MSTsID4 MSTsDD
    • I, Increase; D, decrease; N, no significant change in metabolite concentration. Names in brackets precede a match value for an unidentified compound. These names indicate best mass spectral similarity on a scale of 0 to 1,000 (1,000 is identical) to the indicated compound. *, Metabolite showed increase in other environmental stress conditions.

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    • Supplemental Tables - Supplemental Tables I-III
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Exploring the Temperature-Stress Metabolome of Arabidopsis
Fatma Kaplan, Joachim Kopka, Dale W. Haskell, Wei Zhao, K. Cameron Schiller, Nicole Gatzke, Dong Yul Sung, Charles L. Guy
Plant Physiology Dec 2004, 136 (4) 4159-4168; DOI: 10.1104/pp.104.052142

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Exploring the Temperature-Stress Metabolome of Arabidopsis
Fatma Kaplan, Joachim Kopka, Dale W. Haskell, Wei Zhao, K. Cameron Schiller, Nicole Gatzke, Dong Yul Sung, Charles L. Guy
Plant Physiology Dec 2004, 136 (4) 4159-4168; DOI: 10.1104/pp.104.052142
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Plant Physiology: 136 (4)
Plant Physiology
Vol. 136, Issue 4
Dec 2004
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