Plant Physiology: 142 (2)

Oct 2006

ON THE INSIDE

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On the Inside
Peter V. Minorsky

Plant Physiol. Oct 2006, 142 (2) 377-378; DOI: https://doi.org/10.1104/pp.104.900206

EDITORIALS

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Announcing Focus Collections in Plant Physiology
Donald R. Ort

Plant Physiol. Oct 2006, 142 (2) 379; DOI: https://doi.org/10.1104/pp.104.900205

BREAKTHROUGH TECHNOLOGIES

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Clarification of Pathway-Specific Inhibition by Fourier Transform Ion Cyclotron Resonance/Mass Spectrometry-Based Metabolic Phenotyping Studies
Akira Oikawa, Yukiko Nakamura, Tomonori Ogura, Atsuko Kimura, Hideyuki Suzuki, Nozomu Sakurai, Yoko Shinbo, Daisuke Shibata, Shigehiko Kanaya, Daisaku Ohta

Plant Physiol. Oct 2006, 142 (2) 398-413; DOI: https://doi.org/10.1104/pp.106.080317

BIOINFORMATICS

Open Access
Whole-Plant Growth Stage Ontology for Angiosperms and Its Application in Plant Biology
Anuradha Pujar, Pankaj Jaiswal, Elizabeth A. Kellogg, Katica Ilic, Leszek Vincent, Shulamit Avraham, Peter Stevens, Felipe Zapata, Leonore Reiser, Seung Y. Rhee, Martin M. Sachs, Mary Schaeffer, Lincoln Stein, Doreen Ware, Susan McCouch

Plant Physiol. Oct 2006, 142 (2) 414-428; DOI: https://doi.org/10.1104/pp.106.085720
Open Access
Computational Estimation and Experimental Verification of Off-Target Silencing during Posttranscriptional Gene Silencing in Plants
Ping Xu, Yuanji Zhang, Li Kang, Marilyn J. Roossinck, Kirankumar S. Mysore

Plant Physiol. Oct 2006, 142 (2) 429-440; DOI: https://doi.org/10.1104/pp.106.083295

GENOME ANALYSIS

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Whole-Genome Analysis of Oryza sativa Reveals Similar Architecture of Two-Component Signaling Machinery with Arabidopsis
Ashwani Pareek, Anupama Singh, Manoj Kumar, Hemant R. Kushwaha, Andrew M. Lynn, Sneh L. Singla-Pareek

Plant Physiol. Oct 2006, 142 (2) 380-397; DOI: https://doi.org/10.1104/pp.106.086371

BIOCHEMICAL PROCESSES AND MACROMOLECULAR STRUCTURES

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A Cytosolic Arabidopsis d-Xylulose Kinase Catalyzes the Phosphorylation of 1-Deoxy-d-Xylulose into a Precursor of the Plastidial Isoprenoid Pathway
Andréa Hemmerlin, Denis Tritsch, Michael Hartmann, Karine Pacaud, Jean-François Hoeffler, Alain van Dorsselaer, Michel Rohmer, Thomas J. Bach

Plant Physiol. Oct 2006, 142 (2) 441-457; DOI: https://doi.org/10.1104/pp.106.086652
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Characterization of Synthetic Hydroxyproline-Rich Proteoglycans with Arabinogalactan Protein and Extensin Motifs in Arabidopsis
José M. Estévez, Marcia J. Kieliszewski, Natalie Khitrov, Chris Somerville

Plant Physiol. Oct 2006, 142 (2) 458-470; DOI: https://doi.org/10.1104/pp.106.084244

BIOENERGETICS AND PHOTOSYNTHESIS

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A Transgenic Approach to Understanding the Influence of Carbonic Anhydrase on C¹⁸OO Discrimination during C₄ Photosynthesis
Asaph B. Cousins, Murray R. Badger, Susanne von Caemmerer

Plant Physiol. Oct 2006, 142 (2) 662-672; DOI: https://doi.org/10.1104/pp.106.085167
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Species Having C₄ Single-Cell-Type Photosynthesis in the Chenopodiaceae Family Evolved a Photosynthetic Phosphoenolpyruvate Carboxylase Like That of Kranz-Type C₄ Species
María Valeria Lara, Simon D.X. Chuong, Hossein Akhani, Carlos Santiago Andreo, Gerald E. Edwards

Plant Physiol. Oct 2006, 142 (2) 673-684; DOI: https://doi.org/10.1104/pp.106.085829

CELL BIOLOGY AND SIGNAL TRANSDUCTION

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Quantification of Plasmodesmatal Endoplasmic Reticulum Coupling between Sieve Elements and Companion Cells Using Fluorescence Redistribution after Photobleaching
Helle J. Martens, Alison G. Roberts, Karl J. Oparka, Alexander Schulz

Plant Physiol. Oct 2006, 142 (2) 471-480; DOI: https://doi.org/10.1104/pp.106.085803
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Species Preferentiality of the Pollen Tube Attractant Derived from the Synergid Cell of Torenia fournieri
Tetsuya Higashiyama, Rie Inatsugi, Sachio Sakamoto, Narie Sasaki, Toshiyuki Mori, Haruko Kuroiwa, Takashi Nakada, Hisayoshi Nozaki, Tsuneyoshi Kuroiwa, Akihiko Nakano

Plant Physiol. Oct 2006, 142 (2) 481-491; DOI: https://doi.org/10.1104/pp.106.083832
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Chimeric Proteins Suggest That the Catalytic and/or C-Terminal Domains Give CesA1 and CesA3 Access to Their Specific Sites in the Cellulose Synthase of Primary Walls
Jian Wang, Paul A. Howles, Ann H. Cork, Rosemary J. Birch, Richard E. Williamson

Plant Physiol. Oct 2006, 142 (2) 685-695; DOI: https://doi.org/10.1104/pp.106.084004

DEVELOPMENT AND HORMONE ACTION

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Receptor Signal Output Mediated by the ETR1 N Terminus Is Primarily Subfamily I Receptor Dependent
Fang Xie, Qian Liu, Chi-Kuang Wen

Plant Physiol. Oct 2006, 142 (2) 492-508; DOI: https://doi.org/10.1104/pp.106.082628
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Gibberellin Mobilizes Distinct DELLA-Dependent Transcriptomes to Regulate Seed Germination and Floral Development in Arabidopsis
Dongni Cao, Hui Cheng, Wei Wu, Hui Meng Soo, Jinrong Peng

Plant Physiol. Oct 2006, 142 (2) 509-525; DOI: https://doi.org/10.1104/pp.106.082289
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The turnip Mutant of Arabidopsis Reveals That LEAFY COTYLEDON1 Expression Mediates the Effects of Auxin and Sugars to Promote Embryonic Cell Identity
Stuart A. Casson, Keith Lindsey

Plant Physiol. Oct 2006, 142 (2) 526-541; DOI: https://doi.org/10.1104/pp.106.080895
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Mutations in an Auxin Receptor Homolog AFB5 and in SGT1b Confer Resistance to Synthetic Picolinate Auxins and Not to 2,4-Dichlorophenoxyacetic Acid or Indole-3-Acetic Acid in Arabidopsis
Terence A. Walsh, Roben Neal, Ann Owens Merlo, Mary Honma, Glenn R. Hicks, Karen Wolff, Wendy Matsumura, John P. Davies

Plant Physiol. Oct 2006, 142 (2) 542-552; DOI: https://doi.org/10.1104/pp.106.085969
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Transcriptional Regulation of Gibberellin Metabolism Genes by Auxin Signaling in Arabidopsis
Martín Frigerio, David Alabadí, José Pérez-Gómez, Laura García-Cárcel, Andrew L. Phillips, Peter Hedden, Miguel A. Blázquez

Plant Physiol. Oct 2006, 142 (2) 553-563; DOI: https://doi.org/10.1104/pp.106.084871
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Galactoglucomannans Increase Cell Population Density and Alter the Protoxylem/Metaxylem Tracheary Element Ratio in Xylogenic Cultures of Zinnia
Anna Beňová-Kákošová, Catherine Digonnet, Florence Goubet, Philippe Ranocha, Alain Jauneau, Edouard Pesquet, Odile Barbier, Zhinong Zhang, Peter Capek, Paul Dupree, Desana Lišková, Deborah Goffner

Plant Physiol. Oct 2006, 142 (2) 696-709; DOI: https://doi.org/10.1104/pp.106.085712
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Suppression of LX Ribonuclease in Tomato Results in a Delay of Leaf Senescence and Abscission
Amnon Lers, Lilian Sonego, Pamela J. Green, Shaul Burd

Plant Physiol. Oct 2006, 142 (2) 710-721; DOI: https://doi.org/10.1104/pp.106.080135

ENVIRONMENTAL STRESS AND ADAPTATION TO STRESS

Open Access
Adenosine Kinase Modulates Root Gravitropism and Cap Morphogenesis in Arabidopsis
Li-Sen Young, Benjamin R. Harrison, Narayana Murthy U.M., Barbara A. Moffatt, Simon Gilroy, Patrick H. Masson

Plant Physiol. Oct 2006, 142 (2) 564-573; DOI: https://doi.org/10.1104/pp.106.084798
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IMMUTANS Does Not Act as a Stress-Induced Safety Valve in the Protection of the Photosynthetic Apparatus of Arabidopsis during Steady-State Photosynthesis
Dominic Rosso, Alexander G. Ivanov, Aigen Fu, Jane Geisler-Lee, Luke Hendrickson, Matt Geisler, Gregory Stewart, Marianna Krol, Vaughan Hurry, Steven R. Rodermel, Denis P. Maxwell, Norman P.A. Hüner

Plant Physiol. Oct 2006, 142 (2) 574-585; DOI: https://doi.org/10.1104/pp.106.085886
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Arabidopsis Carboxyl-Terminal Domain Phosphatase-Like Isoforms Share Common Catalytic and Interaction Domains But Have Distinct in Planta Functions
Wooyoung Bang, Sewon Kim, Akihiro Ueda, Meenu Vikram, Daejin Yun, Ray A. Bressan, Paul M. Hasegawa, Jeongdong Bahk, Hisashi Koiwa

Plant Physiol. Oct 2006, 142 (2) 586-594; DOI: https://doi.org/10.1104/pp.106.084939
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Interaction between Nitric Oxide and Ethylene in the Induction of Alternative Oxidase in Ozone-Treated Tobacco Plants
Luisa Ederli, Roberta Morettini, Andrea Borgogni, Claus Wasternack, Otto Miersch, Lara Reale, Francesco Ferranti, Nicola Tosti, Stefania Pasqualini

Plant Physiol. Oct 2006, 142 (2) 595-608; DOI: https://doi.org/10.1104/pp.106.085472
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Hormonal and Stress Induction of the Gene Encoding Common Bean Acetyl-Coenzyme A Carboxylase
Rosa Elia Figueroa-Balderas, Berenice García-Ponce, Mario Rocha-Sosa

Plant Physiol. Oct 2006, 142 (2) 609-619; DOI: https://doi.org/10.1104/pp.106.085597
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The Key Role of Chlorocatechol 1,2-Dioxygenase in Phytoremoval and Degradation of Catechol by Transgenic Arabidopsis
Yang Liao, Xiao Zhou, Jin Yu, Yajun Cao, Xian Li, Benke Kuai

Plant Physiol. Oct 2006, 142 (2) 620-628; DOI: https://doi.org/10.1104/pp.106.085936
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Transgenic Tobacco Plants Overexpressing Chitinases of Fungal Origin Show Enhanced Resistance to Biotic and Abiotic Stress Agents
María de las Mercedes Dana, José A. Pintor-Toro, Beatriz Cubero

Plant Physiol. Oct 2006, 142 (2) 722-730; DOI: https://doi.org/10.1104/pp.106.086140
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Effects of Zinc Deficiency on Rice Growth and Genetic Factors Contributing to Tolerance
Matthias Wissuwa, Abdelbagi M. Ismail, Seiji Yanagihara

Plant Physiol. Oct 2006, 142 (2) 731-741; DOI: https://doi.org/10.1104/pp.106.085225
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Detection and Quantification of Unbound Phytochelatin 2 in Plant Extracts of Brassica napus Grown with Different Levels of Mercury
Santiago Iglesia-Turiño, Anna Febrero, Olga Jauregui, Cristina Caldelas, Jose Luis Araus, Jordi Bort

Plant Physiol. Oct 2006, 142 (2) 742-749; DOI: https://doi.org/10.1104/pp.106.085068
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Quantitative Profiling of Arabidopsis Polar Glycerolipids in Response to Phosphorus Starvation. Roles of Phospholipases Dζ1 and Dζ2 in Phosphatidylcholine Hydrolysis and Digalactosyldiacylglycerol Accumulation in Phosphorus-Starved Plants
Maoyin Li, Ruth Welti, Xuemin Wang

Plant Physiol. Oct 2006, 142 (2) 750-761; DOI: https://doi.org/10.1104/pp.106.085647

GENETICS, GENOMICS, AND MOLECULAR EVOLUTION

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Self-Compatibility of Two Apricot Selections Is Associated with Two Pollen-Part Mutations of Different Nature
Santiago Vilanova, María Luisa Badenes, Lorenzo Burgos, José Martínez-Calvo, Gerardo Llácer, Carlos Romero

Plant Physiol. Oct 2006, 142 (2) 629-641; DOI: https://doi.org/10.1104/pp.106.083865

SYSTEMS BIOLOGY, MOLECULAR BIOLOGY, AND GENE REGULATION

Open Access
Dual Temporal Role of Plastid Sigma Factor 6 in Arabidopsis Development
Heike Loschelder, Jennifer Schweer, Brigitte Link, Gerhard Link

Plant Physiol. Oct 2006, 142 (2) 642-650; DOI: https://doi.org/10.1104/pp.106.085878
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Down-Regulation of the 26S Proteasome Subunit RPN9 Inhibits Viral Systemic Transport and Alters Plant Vascular Development
Hailing Jin, Songtao Li, Andy Villegas Jr.

Plant Physiol. Oct 2006, 142 (2) 651-661; DOI: https://doi.org/10.1104/pp.106.083519
Open Access
Transcriptional Coordination of the Metabolic Network in Arabidopsis
Hairong Wei, Staffan Persson, Tapan Mehta, Vinodh Srinivasasainagendra, Lang Chen, Grier P. Page, Chris Somerville, Ann Loraine

Plant Physiol. Oct 2006, 142 (2) 762-774; DOI: https://doi.org/10.1104/pp.106.080358
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Dehydroascorbate Reductase Affects Leaf Growth, Development, and Function
Zhong Chen, Daniel R. Gallie

Plant Physiol. Oct 2006, 142 (2) 775-787; DOI: https://doi.org/10.1104/pp.106.085506
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The Frequency and Efficiency of Endogene Suppression by Transitive Silencing Signals Is Influenced by the Length of Sequence Homology
Annick Bleys, Leen Vermeersch, Helena Van Houdt, Anna Depicker

Plant Physiol. Oct 2006, 142 (2) 788-796; DOI: https://doi.org/10.1104/pp.106.083956
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A Heteromeric RNA-Binding Protein Is Involved in Maintaining Acrophase and Period of the Circadian Clock
Dobromir Iliev, Olga Voytsekh, Eva-Maria Schmidt, Monika Fiedler, Alla Nykytenko, Maria Mittag

Plant Physiol. Oct 2006, 142 (2) 797-806; DOI: https://doi.org/10.1104/pp.106.085944

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Table of Contents

ON THE INSIDE

EDITORIALS

BREAKTHROUGH TECHNOLOGIES

BIOINFORMATICS

GENOME ANALYSIS

BIOCHEMICAL PROCESSES AND MACROMOLECULAR STRUCTURES

BIOENERGETICS AND PHOTOSYNTHESIS

CELL BIOLOGY AND SIGNAL TRANSDUCTION

DEVELOPMENT AND HORMONE ACTION

ENVIRONMENTAL STRESS AND ADAPTATION TO STRESS

GENETICS, GENOMICS, AND MOLECULAR EVOLUTION

SYSTEMS BIOLOGY, MOLECULAR BIOLOGY, AND GENE REGULATION

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