Plant Physiology: 146 (2)

Feb 2008

ON THE INSIDE

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On the Inside
Peter V. Minorsky

Plant Physiol. Feb 2008, 146 (2) 323-324; DOI: https://doi.org/10.1104/pp.104.900246

BREAKTHROUGH TECHNOLOGIES

Open Access
Firefly Luciferase Complementation Imaging Assay for Protein-Protein Interactions in Plants
Huamin Chen, Yan Zou, Yulei Shang, Huiqiong Lin, Yujing Wang, Run Cai, Xiaoyan Tang, Jian-Min Zhou

Plant Physiol. Feb 2008, 146 (2) 368-376; DOI: https://doi.org/10.1104/pp.107.111740

BIOINFORMATICS

Open Access
AffyTrees: Facilitating Comparative Analysis of Affymetrix Plant Microarray Chips
Tancred Frickey, Vagner Augusto Benedito, Michael Udvardi, Georg Weiller

Plant Physiol. Feb 2008, 146 (2) 377-386; DOI: https://doi.org/10.1104/pp.107.109603

UPDATES

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T-DNA Binary Vectors and Systems
Lan-Ying Lee, Stanton B. Gelvin

Plant Physiol. Feb 2008, 146 (2) 325-332; DOI: https://doi.org/10.1104/pp.107.113001

GENOME ANALYSIS

Open Access
Genomic Survey and Gene Expression Analysis of the Basic Leucine Zipper Transcription Factor Family in Rice
Aashima Nijhawan, Mukesh Jain, Akhilesh K. Tyagi, Jitendra P. Khurana

Plant Physiol. Feb 2008, 146 (2) 333-350; DOI: https://doi.org/10.1104/pp.107.112821
Open Access
Evolutionary Radiation Pattern of Novel Protein Phosphatases Revealed by Analysis of Protein Data from the Completely Sequenced Genomes of Humans, Green Algae, and Higher Plants
David Kerk, George Templeton, Greg B.G. Moorhead

Plant Physiol. Feb 2008, 146 (2) 351-367; DOI: https://doi.org/10.1104/pp.107.111393

BIOCHEMICAL PROCESSES AND MACROMOLECULAR STRUCTURES

Open Access
Metabolomics Reveals Novel Pathways and Differential Mechanistic and Elicitor-Specific Responses in Phenylpropanoid and Isoflavonoid Biosynthesis in Medicago truncatula Cell Cultures
Mohamed A. Farag, David V. Huhman, Richard A. Dixon, Lloyd W. Sumner

Plant Physiol. Feb 2008, 146 (2) 387-402; DOI: https://doi.org/10.1104/pp.107.108431
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Molecular Cloning and Characterization of a Vacuolar Class III Peroxidase Involved in the Metabolism of Anticancer Alkaloids in Catharanthus roseus
Maria Manuela R. Costa, Frederique Hilliou, Patrícia Duarte, Luís Gustavo Pereira, Iolanda Almeida, Mark Leech, Johan Memelink, Alfonso Ros Barceló, Mariana Sottomayor

Plant Physiol. Feb 2008, 146 (2) 403-417; DOI: https://doi.org/10.1104/pp.107.107060
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Identification, Biochemical Characterization, and Subcellular Localization of Allantoate Amidohydrolases from Arabidopsis and Soybean
Andrea K. Werner, Imogen A. Sparkes, Tina Romeis, Claus-Peter Witte

Plant Physiol. Feb 2008, 146 (2) 418-430; DOI: https://doi.org/10.1104/pp.107.110809
Open Access
An Arabidopsis Purple Acid Phosphatase with Phytase Activity Increases Foliar Ascorbate
Wenyan Zhang, Hope A. Gruszewski, Boris I. Chevone, Craig L. Nessler

Plant Physiol. Feb 2008, 146 (2) 431-440; DOI: https://doi.org/10.1104/pp.107.109934
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Molecular Dissection of Variation in Carbohydrate Metabolism Related to Water-Soluble Carbohydrate Accumulation in Stems of Wheat
Gang-Ping Xue, C. Lynne McIntyre, Colin L.D. Jenkins, Donna Glassop, Anthony F. van Herwaarden, Ray Shorter

Plant Physiol. Feb 2008, 146 (2) 441-454; DOI: https://doi.org/10.1104/pp.107.113076
Open Access
Structural, Biochemical, and Phylogenetic Analyses Suggest That Indole-3-Acetic Acid Methyltransferase Is an Evolutionarily Ancient Member of the SABATH Family
Nan Zhao, Jean-Luc Ferrer, Jeannine Ross, Ju Guan, Yue Yang, Eran Pichersky, Joseph P. Noel, Feng Chen

Plant Physiol. Feb 2008, 146 (2) 455-467; DOI: https://doi.org/10.1104/pp.107.110049
Open Access
Quantitative Conversion of Phytate to Inorganic Phosphorus in Soybean Seeds Expressing a Bacterial Phytase
Kristin D. Bilyeu, Peiyu Zeng, Patricia Coello, Zhanyuan J. Zhang, Hari B. Krishnan, April Bailey, Paul R. Beuselinck, Joe C. Polacco

Plant Physiol. Feb 2008, 146 (2) 468-477; DOI: https://doi.org/10.1104/pp.107.113480
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Dual Targeting of Arabidopsis HOLOCARBOXYLASE SYNTHETASE1: A Small Upstream Open Reading Frame Regulates Translation Initiation and Protein Targeting
Juliette Puyaubert, Laurence Denis, Claude Alban

Plant Physiol. Feb 2008, 146 (2) 478-491; DOI: https://doi.org/10.1104/pp.107.111534
Open Access
Functions of Chloroplastic Adenylate Kinases in Arabidopsis
Peter Robert Lange, Claudia Geserick, Gilbert Tischendorf, Rita Zrenner

Plant Physiol. Feb 2008, 146 (2) 492-504; DOI: https://doi.org/10.1104/pp.107.114702

BIOENERGETICS AND PHOTOSYNTHESIS

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Environmental Effects on Oxygen Isotope Enrichment of Leaf Water in Cotton Leaves
Francesco Ripullone, Naoko Matsuo, Hilary Stuart-Williams, Suan Chin Wong, Marco Borghetti, Makoto Tani, Graham Farquhar

Plant Physiol. Feb 2008, 146 (2) 729-736; DOI: https://doi.org/10.1104/pp.107.105643
Open Access
The Contribution of Photosynthesis to the Red Light Response of Stomatal Conductance
Irene Baroli, G. Dean Price, Murray R. Badger, Susanne von Caemmerer

Plant Physiol. Feb 2008, 146 (2) 737-747; DOI: https://doi.org/10.1104/pp.107.110924

CELL BIOLOGY AND SIGNAL TRANSDUCTION

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Cytoplasmic Calcium Increases in Response to Changes in the Gravity Vector in Hypocotyls and Petioles of Arabidopsis Seedlings
Masatsugu Toyota, Takuya Furuichi, Hitoshi Tatsumi, Masahiro Sokabe

Plant Physiol. Feb 2008, 146 (2) 505-514; DOI: https://doi.org/10.1104/pp.107.106450
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Sucrose Transporter StSUT4 from Potato Affects Flowering, Tuberization, and Shade Avoidance Response
Izabela A. Chincinska, Johannes Liesche, Undine Krügel, Justyna Michalska, Peter Geigenberger, Bernhard Grimm, Christina Kühn

Plant Physiol. Feb 2008, 146 (2) 515-528; DOI: https://doi.org/10.1104/pp.107.112334
Open Access
Glutamate Receptor Subtypes Evidenced by Differences in Desensitization and Dependence on the GLR3.3 and GLR3.4 Genes
Nicholas R. Stephens, Zhi Qi, Edgar P. Spalding

Plant Physiol. Feb 2008, 146 (2) 529-538; DOI: https://doi.org/10.1104/pp.107.108134
Open Access
Specificity of RCN1-Mediated Protein Phosphatase 2A Regulation in Meristem Organization and Stress Response in Roots
Joshua J. Blakeslee, Hong-Wei Zhou, Jeffrey T. Heath, Kyle R. Skottke, Jorge A. Rodriguez Barrios, Su-Yang Liu, Alison DeLong

Plant Physiol. Feb 2008, 146 (2) 539-553; DOI: https://doi.org/10.1104/pp.107.112995

DEVELOPMENT AND HORMONE ACTION

Open Access
Pectin Methyl Esterase Inhibits Intrusive and Symplastic Cell Growth in Developing Wood Cells of Populus
Anna Siedlecka, Susanne Wiklund, Marie-Amélie Péronne, Fabienne Micheli, Joanna Leśniewska, Ingmar Sethson, Ulf Edlund, Luc Richard, Björn Sundberg, Ewa J. Mellerowicz

Plant Physiol. Feb 2008, 146 (2) 554-565; DOI: https://doi.org/10.1104/pp.107.111963
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Arabidopsis Genes AS1, AS2, and JAG Negatively Regulate Boundary-Specifying Genes to Promote Sepal and Petal Development
Ben Xu, Ziyu Li, Yan Zhu, Hua Wang, Hong Ma, Aiwu Dong, Hai Huang

Plant Physiol. Feb 2008, 146 (2) 566-575; DOI: https://doi.org/10.1104/pp.107.113787

ENVIRONMENTAL STRESS AND ADAPTATION TO STRESS

Open Access
UV-B Signaling Pathways with Different Fluence-Rate Response Profiles Are Distinguished in Mature Arabidopsis Leaf Tissue by Requirement for UVR8, HY5, and HYH
Bobby A. Brown, Gareth I. Jenkins

Plant Physiol. Feb 2008, 146 (2) 576-588; DOI: https://doi.org/10.1104/pp.107.108456
Open Access
The Arabidopsis AtOPT3 Protein Functions in Metal Homeostasis and Movement of Iron to Developing Seeds
Minviluz G. Stacey, Ami Patel, William E. McClain, Melanie Mathieu, Melissa Remley, Elizabeth E. Rogers, Walter Gassmann, Dale G. Blevins, Gary Stacey

Plant Physiol. Feb 2008, 146 (2) 589-601; DOI: https://doi.org/10.1104/pp.107.108183
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Cell Wall Polysaccharides Are Specifically Involved in the Exclusion of Aluminum from the Rice Root Apex
Jian Li Yang, Ya Ying Li, Yue Jiao Zhang, Shan Shan Zhang, Yun Rong Wu, Ping Wu, Shao Jian Zheng

Plant Physiol. Feb 2008, 146 (2) 602-611; DOI: https://doi.org/10.1104/pp.107.111989
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The Arabidopsis Kinase-Associated Protein Phosphatase Regulates Adaptation to Na⁺ Stress
Yuzuki Manabe, Ray A. Bressan, Tao Wang, Fang Li, Hisashi Koiwa, Irina Sokolchik, Xia Li, Albino Maggio

Plant Physiol. Feb 2008, 146 (2) 612-622; DOI: https://doi.org/10.1104/pp.107.109009
Open Access
Overexpression of AtMYB44 Enhances Stomatal Closure to Confer Abiotic Stress Tolerance in Transgenic Arabidopsis
Choonkyun Jung, Jun Sung Seo, Sang Won Han, Yeon Jong Koo, Chung Ho Kim, Sang Ik Song, Baek Hie Nahm, Yang Do Choi, Jong-Joo Cheong

Plant Physiol. Feb 2008, 146 (2) 623-635; DOI: https://doi.org/10.1104/pp.107.110981
Open Access
Functional Coexpression of the Mitochondrial Alternative Oxidase and Uncoupling Protein Underlies Thermoregulation in the Thermogenic Florets of Skunk Cabbage
Yoshihiko Onda, Yoshiaki Kato, Yukie Abe, Takanori Ito, Miyuki Morohashi, Yuka Ito, Megumi Ichikawa, Kazushige Matsukawa, Yusuke Kakizaki, Hiroyuki Koiwa, Kikukatsu Ito

Plant Physiol. Feb 2008, 146 (2) 636-645; DOI: https://doi.org/10.1104/pp.107.113563
Open Access
Core Genome Responses Involved in Acclimation to High Temperature
Jane Larkindale, Elizabeth Vierling

Plant Physiol. Feb 2008, 146 (2) 748-761; DOI: https://doi.org/10.1104/pp.107.112060

GENETICS, GENOMICS, AND MOLECULAR EVOLUTION

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Characterization of the PHO1 Gene Family and the Responses to Phosphate Deficiency of Physcomitrella patens
Yong Wang, David Secco, Yves Poirier

Plant Physiol. Feb 2008, 146 (2) 646-656; DOI: https://doi.org/10.1104/pp.107.108548

PLANTS INTERACTING WITH OTHER ORGANISMS

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Pyrroloquinoline Quinone Is a Plant Growth Promotion Factor Produced by Pseudomonas fluorescens B16
Okhee Choi, Jinwoo Kim, Jung-Gun Kim, Yeonhwa Jeong, Jae Sun Moon, Chang Seuk Park, Ingyu Hwang

Plant Physiol. Feb 2008, 146 (2) 657-668; DOI: https://doi.org/10.1104/pp.107.112748
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Transgenic Expression of a Fungal endo-Polygalacturonase Increases Plant Resistance to Pathogens and Reduces Auxin Sensitivity
Simone Ferrari, Roberta Galletti, Daniela Pontiggia, Cinzia Manfredini, Vincenzo Lionetti, Daniela Bellincampi, Felice Cervone, Giulia De Lorenzo

Plant Physiol. Feb 2008, 146 (2) 669-681; DOI: https://doi.org/10.1104/pp.107.109686
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Characterization of the Interaction of a Novel Stagonospora nodorum Host-Selective Toxin with a Wheat Susceptibility Gene
Timothy L. Friesen, Zengcui Zhang, Peter S. Solomon, Richard P. Oliver, Justin D. Faris

Plant Physiol. Feb 2008, 146 (2) 682-693; DOI: https://doi.org/10.1104/pp.107.108761
Open Access
Kinetics and Mechanism of Dionaea muscipula Trap Closing
Alexander G. Volkov, Tejumade Adesina, Vladislav S. Markin, Emil Jovanov

Plant Physiol. Feb 2008, 146 (2) 694-702; DOI: https://doi.org/10.1104/pp.107.108241
Open Access
Salicylic Acid and Systemic Acquired Resistance Play a Role in Attenuating Crown Gall Disease Caused by Agrobacterium tumefaciens
Ajith Anand, Srinivasa Rao Uppalapati, Choong-Min Ryu, Stacy N. Allen, Li Kang, Yuhong Tang, Kirankumar S. Mysore

Plant Physiol. Feb 2008, 146 (2) 703-715; DOI: https://doi.org/10.1104/pp.107.111302
Open Access
Altered Profile of Secondary Metabolites in the Root Exudates of Arabidopsis ATP-Binding Cassette Transporter Mutants
Dayakar V. Badri, Victor M. Loyola-Vargas, Corey D. Broeckling, Clelia De-la-Peña, Michal Jasinski, Diana Santelia, Enrico Martinoia, Lloyd W. Sumner, Lois M. Banta, Frank Stermitz, Jorge M. Vivanco

Plant Physiol. Feb 2008, 146 (2) 762-771; DOI: https://doi.org/10.1104/pp.107.109587

SYSTEMS BIOLOGY, MOLECULAR BIOLOGY, AND GENE REGULATION

Open Access
The ACA10 Ca²⁺-ATPase Regulates Adult Vegetative Development and Inflorescence Architecture in Arabidopsis
Lynn George, Shawn M. Romanowsky, Jeffrey F. Harper, Robert A. Sharrock

Plant Physiol. Feb 2008, 146 (2) 716-728; DOI: https://doi.org/10.1104/pp.107.108118
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The Phosphoproteome of a Chlamydomonas reinhardtii Eyespot Fraction Includes Key Proteins of the Light Signaling Pathway
Volker Wagner, Katharina Ullmann, Anne Mollwo, Marc Kaminski, Maria Mittag, Georg Kreimer

Plant Physiol. Feb 2008, 146 (2) 772-788; DOI: https://doi.org/10.1104/pp.107.109645
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The NADPH-Dependent Thioredoxin Reductase/Thioredoxin System in Germinating Barley Seeds: Gene Expression, Protein Profiles, and Interactions between Isoforms of Thioredoxin h and Thioredoxin Reductase
Azar Shahpiri, Birte Svensson, Christine Finnie

Plant Physiol. Feb 2008, 146 (2) 789-799; DOI: https://doi.org/10.1104/pp.107.113639

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Table of Contents

ON THE INSIDE

BREAKTHROUGH TECHNOLOGIES

BIOINFORMATICS

UPDATES

GENOME ANALYSIS

BIOCHEMICAL PROCESSES AND MACROMOLECULAR STRUCTURES

BIOENERGETICS AND PHOTOSYNTHESIS

CELL BIOLOGY AND SIGNAL TRANSDUCTION

DEVELOPMENT AND HORMONE ACTION

ENVIRONMENTAL STRESS AND ADAPTATION TO STRESS

GENETICS, GENOMICS, AND MOLECULAR EVOLUTION

PLANTS INTERACTING WITH OTHER ORGANISMS

SYSTEMS BIOLOGY, MOLECULAR BIOLOGY, AND GENE REGULATION

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