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Table of Contents

Plant Physiology: 149 (1)
Jan 2009

FOCUS ISSUE ON THE GRASSES

  • EDITORIALS - FOCUS ISSUE

    • You have accessRestricted Access
      Splendor in the Grasses
      Elizabeth A. Kellogg, C. Robin Buell
      Plant Physiol. Jan 2009, 149 (1) 1-3; DOI: https://doi.org/10.1104/pp.104.900281
  • UPDATES

    • You have accessRestricted Access
      Increasing Crop Productivity to Meet Global Needs for Feed, Food, and Fuel
      Michael D. Edgerton
      Plant Physiol. Jan 2009, 149 (1) 7-13; DOI: https://doi.org/10.1104/pp.108.130195
    • You have accessRestricted Access
      The Development of Endosperm in Grasses
      Paolo A. Sabelli, Brian A. Larkins
      Plant Physiol. Jan 2009, 149 (1) 14-26; DOI: https://doi.org/10.1104/pp.108.129437
    • You have accessRestricted Access
      Revolutionary Times in Our Understanding of Cell Wall Biosynthesis and Remodeling in the Grasses
      Geoffrey B. Fincher
      Plant Physiol. Jan 2009, 149 (1) 27-37; DOI: https://doi.org/10.1104/pp.108.130096
    • You have accessRestricted Access
      Translational Biology: From Arabidopsis Flowers to Grass Inflorescence Architecture
      Beth E. Thompson, Sarah Hake
      Plant Physiol. Jan 2009, 149 (1) 38-45; DOI: https://doi.org/10.1104/pp.108.129619
    • You have accessRestricted Access
      Hormonal Regulation of Branching in Grasses
      Paula McSteen
      Plant Physiol. Jan 2009, 149 (1) 46-55; DOI: https://doi.org/10.1104/pp.108.129056
    • You have accessRestricted Access
      Mechanisms of Floral Induction in Grasses: Something Borrowed, Something New
      Joseph Colasanti, Viktoriya Coneva
      Plant Physiol. Jan 2009, 149 (1) 56-62; DOI: https://doi.org/10.1104/pp.108.130500
    • You have accessRestricted Access
      Genes and Mutations Underlying Domestication Transitions in Grasses
      Tao Sang
      Plant Physiol. Jan 2009, 149 (1) 63-70; DOI: https://doi.org/10.1104/pp.108.128827
    • You have accessRestricted Access
      Genetic Control of Carbon Partitioning in Grasses: Roles of Sucrose Transporters and Tie-dyed Loci in Phloem Loading
      David M. Braun, Thomas L. Slewinski
      Plant Physiol. Jan 2009, 149 (1) 71-81; DOI: https://doi.org/10.1104/pp.108.129049
    • You have accessRestricted Access
      Integrating Phylogeny into Studies of C4 Variation in the Grasses
      Pascal-Antoine Christin, Nicolas Salamin, Elizabeth A. Kellogg, Alberto Vicentini, Guillaume Besnard
      Plant Physiol. Jan 2009, 149 (1) 82-87; DOI: https://doi.org/10.1104/pp.108.128553
    • You have accessRestricted Access
      Transcriptional Regulatory Networks in Response to Abiotic Stresses in Arabidopsis and Grasses
      Kazuo Nakashima, Yusuke Ito, Kazuko Yamaguchi-Shinozaki
      Plant Physiol. Jan 2009, 149 (1) 88-95; DOI: https://doi.org/10.1104/pp.108.129791
    • You have accessRestricted Access
      Indirect Defense Responses to Herbivory in Grasses
      Jörg Degenhardt
      Plant Physiol. Jan 2009, 149 (1) 96-102; DOI: https://doi.org/10.1104/pp.108.128975
    • You have accessRestricted Access
      For Blighted Waves of Grain: Fusarium graminearum in the Postgenomics Era
      Frances Trail
      Plant Physiol. Jan 2009, 149 (1) 103-110; DOI: https://doi.org/10.1104/pp.108.129684
    • You have accessRestricted Access
      Poaceae Genomes: Going from Unattainable to Becoming a Model Clade for Comparative Plant Genomics
      C. Robin Buell
      Plant Physiol. Jan 2009, 149 (1) 111-116; DOI: https://doi.org/10.1104/pp.108.128926
    • You have accessRestricted Access
      Synergy of Two Reference Genomes for the Grass Family
      Joachim Messing
      Plant Physiol. Jan 2009, 149 (1) 117-124; DOI: https://doi.org/10.1104/pp.108.128520
    • You have accessRestricted Access
      Comparative Genomics of Grasses Promises a Bountiful Harvest
      Andrew H. Paterson, John E. Bowers, Frank A. Feltus, Haibao Tang, Lifeng Lin, Xiyin Wang
      Plant Physiol. Jan 2009, 149 (1) 125-131; DOI: https://doi.org/10.1104/pp.108.129262
    • You have accessRestricted Access
      Genomic and Genetic Database Resources for the Grasses
      Kevin L. Childs
      Plant Physiol. Jan 2009, 149 (1) 132-136; DOI: https://doi.org/10.1104/pp.108.129593
    • You have accessRestricted Access
      Foxtail Millet: A Sequence-Driven Grass Model System
      Andrew N. Doust, Elizabeth A. Kellogg, Katrien M. Devos, Jeffrey L. Bennetzen
      Plant Physiol. Jan 2009, 149 (1) 137-141; DOI: https://doi.org/10.1104/pp.108.129627
    • You have accessRestricted Access
      The International Barley Sequencing Consortium—At the Threshold of Efficient Access to the Barley Genome
      Daniela Schulte, Timothy J. Close, Andreas Graner, Peter Langridge, Takashi Matsumoto, Gary Muehlbauer, Kazuhiro Sato, Alan H. Schulman, Robbie Waugh, Roger P. Wise, Nils Stein
      Plant Physiol. Jan 2009, 149 (1) 142-147; DOI: https://doi.org/10.1104/pp.108.128967
    • You have accessRestricted Access
      Cereal Germplasm Resources
      Martin M. Sachs
      Plant Physiol. Jan 2009, 149 (1) 148-151; DOI: https://doi.org/10.1104/pp.108.129205
    • You have accessRestricted Access
      Resources for Virus-Induced Gene Silencing in the Grasses
      Steven R. Scofield, Richard S. Nelson
      Plant Physiol. Jan 2009, 149 (1) 152-157; DOI: https://doi.org/10.1104/pp.108.128702
    • You have accessRestricted Access
      TILLING in Grass Species
      Clifford F. Weil
      Plant Physiol. Jan 2009, 149 (1) 158-164; DOI: https://doi.org/10.1104/pp.108.128785
    • You have accessRestricted Access
      Mutant Resources in Rice for Functional Genomics of the Grasses
      Arjun Krishnan, Emmanuel Guiderdoni, Gynheung An, Yue-ie C. Hsing, Chang-deok Han, Myung Chul Lee, Su-May Yu, Narayana Upadhyaya, Srinivasan Ramachandran, Qifa Zhang, Venkatesan Sundaresan, Hirohiko Hirochika, Hei Leung, Andy Pereira
      Plant Physiol. Jan 2009, 149 (1) 165-170; DOI: https://doi.org/10.1104/pp.108.128918
  • LETTER TO THE EDITOR

    • You have accessRestricted Access
      A Recommendation for Naming Transcription Factor Proteins in the Grasses
      John Gray, Michael Bevan, Thomas Brutnell, C. Robin Buell, Karen Cone, Sarah Hake, David Jackson, Elizabeth Kellogg, Carolyn Lawrence, Susan McCouch, Todd Mockler, Stephen Moose, Andrew Paterson, Thomas Peterson, Daniel Rokshar, Glaucia Mendes Souza, Nathan Springer, Nils Stein, Marja Timmermans, Guo-Liang Wang, Erich Grotewold
      Plant Physiol. Jan 2009, 149 (1) 4-6; DOI: https://doi.org/10.1104/pp.108.128504
  • BIOINFORMATICS

    • Open Access
      GRASSIUS: A Platform for Comparative Regulatory Genomics across the Grasses
      Alper Yilmaz, Milton Y. Nishiyama Jr., Bernardo Garcia Fuentes, Glaucia Mendes Souza, Daniel Janies, John Gray, Erich Grotewold
      Plant Physiol. Jan 2009, 149 (1) 171-180; DOI: https://doi.org/10.1104/pp.108.128579
  • RESEARCH ARTICLES

    • Open Access
      Tie-dyed1 Encodes a Novel, Phloem-Expressed Transmembrane Protein That Functions in Carbohydrate Partitioning
      Yi Ma, Thomas L. Slewinski, R. Frank Baker, David M. Braun
      Plant Physiol. Jan 2009, 149 (1) 181-194; DOI: https://doi.org/10.1104/pp.108.130971
    • Open Access
      High Glycolate Oxidase Activity Is Required for Survival of Maize in Normal Air
      Israel Zelitch, Neil P. Schultes, Richard B. Peterson, Patrick Brown, Thomas P. Brutnell
      Plant Physiol. Jan 2009, 149 (1) 195-204; DOI: https://doi.org/10.1104/pp.108.128439
    • Open Access
      suppressor of sessile spikelets1 Functions in the ramosa Pathway Controlling Meristem Determinacy in Maize
      Xianting Wu, Andrea Skirpan, Paula McSteen
      Plant Physiol. Jan 2009, 149 (1) 205-219; DOI: https://doi.org/10.1104/pp.108.125005
    • Open Access
      The ATG Autophagic Conjugation System in Maize: ATG Transcripts and Abundance of the ATG8-Lipid Adduct Are Regulated by Development and Nutrient Availability
      Taijoon Chung, Anongpat Suttangkakul, Richard D. Vierstra
      Plant Physiol. Jan 2009, 149 (1) 220-234; DOI: https://doi.org/10.1104/pp.108.126714
    • You have accessRestricted Access
      RETARDED PALEA1 Controls Palea Development and Floral Zygomorphy in Rice
      Zheng Yuan, Shan Gao, Da-Wei Xue, Da Luo, Lan-Tian Li, Shu-Yan Ding, Xuan Yao, Zoe A. Wilson, Qian Qian, Da-Bing Zhang
      Plant Physiol. Jan 2009, 149 (1) 235-244; DOI: https://doi.org/10.1104/pp.108.128231
    • Open Access
      Genetic and Molecular Characterization of the VRN2 Loci in Tetraploid Wheat
      Assaf Distelfeld, Gabriela Tranquilli, Chengxia Li, Liuling Yan, Jorge Dubcovsky
      Plant Physiol. Jan 2009, 149 (1) 245-257; DOI: https://doi.org/10.1104/pp.108.129353
    • Open Access
      Analysis of Intraspecies Diversity in Wheat and Barley Genomes Identifies Breakpoints of Ancient Haplotypes and Provides Insight into the Structure of Diploid and Hexaploid Triticeae Gene Pools
      Thomas Wicker, Simon G. Krattinger, Evans S. Lagudah, Takao Komatsuda, Mohammad Pourkheirandish, Takashi Matsumoto, Sylvie Cloutier, Laurenz Reiser, Hiroyuki Kanamori, Kazuhiro Sato, Dragan Perovic, Nils Stein, Beat Keller
      Plant Physiol. Jan 2009, 149 (1) 258-270; DOI: https://doi.org/10.1104/pp.108.129734
    • Open Access
      Blufensin1 Negatively Impacts Basal Defense in Response to Barley Powdery Mildew
      Yan Meng, Matthew J. Moscou, Roger P. Wise
      Plant Physiol. Jan 2009, 149 (1) 271-285; DOI: https://doi.org/10.1104/pp.108.129031
    • Open Access
      A Germin-Like Protein Gene Family Functions as a Complex Quantitative Trait Locus Conferring Broad-Spectrum Disease Resistance in Rice
      Patricia M. Manosalva, Rebecca M. Davidson, Bin Liu, Xiaoyuan Zhu, Scot H. Hulbert, Hei Leung, Jan E. Leach
      Plant Physiol. Jan 2009, 149 (1) 286-296; DOI: https://doi.org/10.1104/pp.108.128348
    • Open Access
      OsFRDL1 Is a Citrate Transporter Required for Efficient Translocation of Iron in Rice
      Kengo Yokosho, Naoki Yamaji, Daisei Ueno, Namiki Mitani, Jian Feng Ma
      Plant Physiol. Jan 2009, 149 (1) 297-305; DOI: https://doi.org/10.1104/pp.108.128132
    • Open Access
      Antiquity and Function of CASTOR and POLLUX, the Twin Ion Channel-Encoding Genes Key to the Evolution of Root Symbioses in Plants
      Caiyan Chen, Cui Fan, Muqiang Gao, Hongyan Zhu
      Plant Physiol. Jan 2009, 149 (1) 306-317; DOI: https://doi.org/10.1104/pp.108.131540
    • Open Access
      Characterization of an Autonomously Activated Plant ADP-Glucose Pyrophosphorylase
      Susan K. Boehlein, Janine R. Shaw, Jon D. Stewart, L. Curtis Hannah
      Plant Physiol. Jan 2009, 149 (1) 318-326; DOI: https://doi.org/10.1104/pp.108.126862
    • You have accessRestricted Access
      Transforming a Fructan:Fructan 6G-Fructosyltransferase from Perennial Ryegrass into a Sucrose:Sucrose 1-Fructosyltransferase
      Bertrand Lasseur, Lindsey Schroeven, Willem Lammens, Katrien Le Roy, German Spangenberg, Hélène Manduzio, Rudy Vergauwen, Jérémy Lothier, Marie-Pascale Prud'homme, Wim Van den Ende
      Plant Physiol. Jan 2009, 149 (1) 327-339; DOI: https://doi.org/10.1104/pp.108.125559
    • Open Access
      A Second Mechanism for Aluminum Resistance in Wheat Relies on the Constitutive Efflux of Citrate from Roots
      Peter R. Ryan, Harsh Raman, Sanjay Gupta, Walter J. Horst, Emmanuel Delhaize
      Plant Physiol. Jan 2009, 149 (1) 340-351; DOI: https://doi.org/10.1104/pp.108.129155

REGULAR ISSUE

  • ON THE INSIDE

    • You have accessRestricted Access
      On the Inside
      Peter V. Minorsky
      Plant Physiol. Jan 2009, 149 (1) 352-353; DOI: https://doi.org/10.1104/pp.104.900282
  • GENOME ANALYSIS

    • Open Access
      Genome-Wide Analysis of MIKCC-Type MADS Box Genes in Grapevine
      José Díaz-Riquelme, Diego Lijavetzky, José M. Martínez-Zapater, María José Carmona
      Plant Physiol. Jan 2009, 149 (1) 354-369; DOI: https://doi.org/10.1104/pp.108.131052
  • BIOCHEMICAL PROCESSES AND MACROMOLECULAR STRUCTURES

    • You have accessRestricted Access
      Suppression of 4-Coumarate-CoA Ligase in the Coniferous Gymnosperm Pinus radiata
      Armin Wagner, Lloyd Donaldson, Hoon Kim, Lorelle Phillips, Heather Flint, Diane Steward, Kirk Torr, Gerald Koch, Uwe Schmitt, John Ralph
      Plant Physiol. Jan 2009, 149 (1) 370-383; DOI: https://doi.org/10.1104/pp.108.125765
    • Open Access
      Biosynthesis of t-Anethole in Anise: Characterization of t-Anol/Isoeugenol Synthase and an O-Methyltransferase Specific for a C7-C8 Propenyl Side Chain
      Takao Koeduka, Thomas J. Baiga, Joseph P. Noel, Eran Pichersky
      Plant Physiol. Jan 2009, 149 (1) 384-394; DOI: https://doi.org/10.1104/pp.108.128066
    • You have accessRestricted Access
      ADP-Glucose Pyrophosphorylase-Deficient Pea Embryos Reveal Specific Transcriptional and Metabolic Changes of Carbon-Nitrogen Metabolism and Stress Responses
      Kathleen Weigelt, Helge Küster, Twan Rutten, Aaron Fait, Alisdair R. Fernie, Otto Miersch, Claus Wasternack, R. J. Neil Emery, Christine Desel, Felicia Hosein, Martin Müller, Isolde Saalbach, Hans Weber
      Plant Physiol. Jan 2009, 149 (1) 395-411; DOI: https://doi.org/10.1104/pp.108.129940
    • Open Access
      A Relaxed Specificity in Interchain Disulfide Bond Formation Characterizes the Assembly of a Low-Molecular-Weight Glutenin Subunit in the Endoplasmic Reticulum
      Alessio Lombardi, Alessandra Barbante, Pietro Della Cristina, Daniele Rosiello, Chiara Lara Castellazzi, Luca Sbano, Stefania Masci, Aldo Ceriotti
      Plant Physiol. Jan 2009, 149 (1) 412-423; DOI: https://doi.org/10.1104/pp.108.127761
    • Open Access
      Functional Characterization of a Higher Plant Sphingolipid Δ4-Desaturase: Defining the Role of Sphingosine and Sphingosine-1-Phosphate in Arabidopsis
      Louise V. Michaelson, Simone Zäuner, Jonathan E. Markham, Richard P. Haslam, Radhika Desikan, Sarah Mugford, Sandra Albrecht, Dirk Warnecke, Petra Sperling, E. Heinz, Johnathan A. Napier
      Plant Physiol. Jan 2009, 149 (1) 487-498; DOI: https://doi.org/10.1104/pp.108.129411
    • Open Access
      Divergent Regulation of Terpenoid Metabolism in the Trichomes of Wild and Cultivated Tomato Species
      Katrin Besser, Andrea Harper, Nicholas Welsby, Ines Schauvinhold, Stephen Slocombe, Yi Li, Richard A. Dixon, Pierre Broun
      Plant Physiol. Jan 2009, 149 (1) 499-514; DOI: https://doi.org/10.1104/pp.108.126276
  • BIOENERGETICS AND PHOTOSYNTHESIS

    • You have accessRestricted Access
      Chlororespiration and Grana Hyperstacking: How an Arabidopsis Double Mutant Can Survive Despite Defects in Starch Biosynthesis and Daily Carbon Export from Chloroplasts
      Rainer E. Häusler, Stefan Geimer, Hans Henning Kunz, Jessica Schmitz, Peter Dörmann, Kirsten Bell, Sonja Hetfeld, Andre Guballa, Ulf-Ingo Flügge
      Plant Physiol. Jan 2009, 149 (1) 515-533; DOI: https://doi.org/10.1104/pp.108.128124
  • CELL BIOLOGY AND SIGNAL TRANSDUCTION

    • Open Access
      Detection of Spatial-Specific Phytochrome Responses Using Targeted Expression of Biliverdin Reductase in Arabidopsis
      Sankalpi N. Warnasooriya, Beronda L. Montgomery
      Plant Physiol. Jan 2009, 149 (1) 424-433; DOI: https://doi.org/10.1104/pp.108.127050
  • DEVELOPMENT AND HORMONE ACTION

    • Open Access
      The Arabidopsis A4 Subfamily of Lectin Receptor Kinases Negatively Regulates Abscisic Acid Response in Seed Germination
      Zeyu Xin, Anyou Wang, Guohua Yang, Peng Gao, Zhi-Liang Zheng
      Plant Physiol. Jan 2009, 149 (1) 434-444; DOI: https://doi.org/10.1104/pp.108.130583
    • You have accessRestricted Access
      Aucsia Gene Silencing Causes Parthenocarpic Fruit Development in Tomato
      Barbara Molesini, Tiziana Pandolfini, Giuseppe Leonardo Rotino, Valeria Dani, Angelo Spena
      Plant Physiol. Jan 2009, 149 (1) 534-548; DOI: https://doi.org/10.1104/pp.108.131367
  • ENVIRONMENTAL STRESS AND ADAPTATION TO STRESS

    • Open Access
      The Role of Plasma Membrane Intrinsic Protein Aquaporins in Water Transport through Roots: Diurnal and Drought Stress Responses Reveal Different Strategies between Isohydric and Anisohydric Cultivars of Grapevine
      Rebecca K. Vandeleur, Gwenda Mayo, Megan C. Shelden, Matthew Gilliham, Brent N. Kaiser, Stephen D. Tyerman
      Plant Physiol. Jan 2009, 149 (1) 445-460; DOI: https://doi.org/10.1104/pp.108.128645
    • You have accessRestricted Access
      Differential Response of Gray Poplar Leaves and Roots Underpins Stress Adaptation during Hypoxia
      Jürgen Kreuzwieser, Jost Hauberg, Katharine A. Howell, Adam Carroll, Heinz Rennenberg, A. Harvey Millar, James Whelan
      Plant Physiol. Jan 2009, 149 (1) 461-473; DOI: https://doi.org/10.1104/pp.108.125989
  • PLANTS INTERACTING WITH OTHER ORGANISMS

    • Open Access
      Rice Blast Fungus (Magnaporthe oryzae) Infects Arabidopsis via a Mechanism Distinct from That Required for the Infection of Rice
      Ju-Young Park, Jianming Jin, Yin-Won Lee, Seogchan Kang, Yong-Hwan Lee
      Plant Physiol. Jan 2009, 149 (1) 474-486; DOI: https://doi.org/10.1104/pp.108.129536
    • You have accessRestricted Access
      Sulfur Transfer through an Arbuscular Mycorrhiza
      James W. Allen, Yair Shachar-Hill
      Plant Physiol. Jan 2009, 149 (1) 549-560; DOI: https://doi.org/10.1104/pp.108.129866
    • Open Access
      The Genetic Basis of Constitutive and Herbivore-Induced ESP-Independent Nitrile Formation in Arabidopsis
      Meike Burow, Anja Losansky, René Müller, Antje Plock, Daniel J. Kliebenstein, Ute Wittstock
      Plant Physiol. Jan 2009, 149 (1) 561-574; DOI: https://doi.org/10.1104/pp.108.130732
  • WHOLE PLANT AND ECOPHYSIOLOGY

    • Open Access
      Hydraulic Failure Defines the Recovery and Point of Death in Water-Stressed Conifers
      Tim J. Brodribb, Hervé Cochard
      Plant Physiol. Jan 2009, 149 (1) 575-584; DOI: https://doi.org/10.1104/pp.108.129783
  • SYSTEMS BIOLOGY, MOLECULAR BIOLOGY, AND GENE REGULATION

    • You have accessRestricted Access
      Flux Balance Analysis of Barley Seeds: A Computational Approach to Study Systemic Properties of Central Metabolism
      Eva Grafahrend-Belau, Falk Schreiber, Dirk Koschützki, Björn H. Junker
      Plant Physiol. Jan 2009, 149 (1) 585-598; DOI: https://doi.org/10.1104/pp.108.129635
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Plant Physiology: 149 (1)
Plant Physiology
Vol. 149, Issue 1
January 2009
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  • FOCUS ISSUE ON THE GRASSES
    • EDITORIALS - FOCUS ISSUE
    • UPDATES
    • LETTER TO THE EDITOR
    • BIOINFORMATICS
    • RESEARCH ARTICLES
  • REGULAR ISSUE
    • ON THE INSIDE
    • GENOME ANALYSIS
    • BIOCHEMICAL PROCESSES AND MACROMOLECULAR STRUCTURES
    • BIOENERGETICS AND PHOTOSYNTHESIS
    • CELL BIOLOGY AND SIGNAL TRANSDUCTION
    • DEVELOPMENT AND HORMONE ACTION
    • ENVIRONMENTAL STRESS AND ADAPTATION TO STRESS
    • PLANTS INTERACTING WITH OTHER ORGANISMS
    • WHOLE PLANT AND ECOPHYSIOLOGY
    • SYSTEMS BIOLOGY, MOLECULAR BIOLOGY, AND GENE REGULATION

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