Plant Physiology: 149 (2)

Feb 2009

ON THE INSIDE

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On the Inside
Peter V. Minorsky

Plant Physiol. Feb 2009, 149 (2) 599-600; DOI: https://doi.org/10.1104/pp.104.900283

UPDATES

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Advancing Cell Biology and Functional Genomics in Maize Using Fluorescent Protein-Tagged Lines
Amitabh Mohanty, Anding Luo, Stacy DeBlasio, Xingyuan Ling, Yan Yang, Dorothy E. Tuthill, Katherine E. Williams, Daniel Hill, Tara Zadrozny, Agnes Chan, Anne W. Sylvester, David Jackson

Plant Physiol. Feb 2009, 149 (2) 601-605; DOI: https://doi.org/10.1104/pp.108.130146
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Disentangling the Complexity of Mitogen-Activated Protein Kinases and Reactive Oxygen Species Signaling
Andrea Pitzschke, Heribert Hirt

Plant Physiol. Feb 2009, 149 (2) 606-615; DOI: https://doi.org/10.1104/pp.108.131557

BREAKTHROUGH TECHNOLOGIES

Open Access
Establishing RNA Interference as a Reverse-Genetic Approach for Gene Functional Analysis in Protoplasts
Zhiyang Zhai, Thanwalee Sooksa-nguan, Olena K. Vatamaniuk

Plant Physiol. Feb 2009, 149 (2) 642-652; DOI: https://doi.org/10.1104/pp.108.130260

GENOME ANALYSIS

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Analysis of Site Frequency Spectra from Arabidopsis with Context-Dependent Corrections for Ancestral Misinference
Brian R. Morton, Vaqaar-un-Nisa Dar, Stephen I. Wright

Plant Physiol. Feb 2009, 149 (2) 616-624; DOI: https://doi.org/10.1104/pp.108.127787
Open Access
Tissue-Specific Expression Patterns of Arabidopsis NF-Y Transcription Factors Suggest Potential for Extensive Combinatorial Complexity
Nicholas Siefers, Kristen K. Dang, Roderick W. Kumimoto, William Edwards Bynum IV, Gregory Tayrose, Ben F. Holt III

Plant Physiol. Feb 2009, 149 (2) 625-641; DOI: https://doi.org/10.1104/pp.108.130591

BIOCHEMICAL PROCESSES AND MACROMOLECULAR STRUCTURES

Open Access
Decreased Mitochondrial Activities of Malate Dehydrogenase and Fumarase in Tomato Lead to Altered Root Growth and Architecture via Diverse Mechanisms
Margaretha J. van der Merwe, Sonia Osorio, Thomas Moritz, Adriano Nunes-Nesi, Alisdair R. Fernie

Plant Physiol. Feb 2009, 149 (2) 653-669; DOI: https://doi.org/10.1104/pp.108.130518
Open Access
Establishment of a Protein Reference Map for Soybean Root Hair Cells
Laurent Brechenmacher, Joohyun Lee, Sherri Sachdev, Zhao Song, Tran Hong Nha Nguyen, Trupti Joshi, Nathan Oehrle, Marc Libault, Brian Mooney, Dong Xu, Bret Cooper, Gary Stacey

Plant Physiol. Feb 2009, 149 (2) 670-682; DOI: https://doi.org/10.1104/pp.108.131649
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Molecular Cloning and Characterization of a cDNA for Pterocarpan 4-Dimethylallyltransferase Catalyzing the Key Prenylation Step in the Biosynthesis of Glyceollin, a Soybean Phytoalexin
Tomoyoshi Akashi, Kanako Sasaki, Toshio Aoki, Shin-ichi Ayabe, Kazufumi Yazaki

Plant Physiol. Feb 2009, 149 (2) 683-693; DOI: https://doi.org/10.1104/pp.108.123679
Open Access
Analyses of Advanced Rice Anther Transcriptomes Reveal Global Tapetum Secretory Functions and Potential Proteins for Lipid Exine Formation
Ming-Der Huang, Fu-Jin Wei, Cheng-Cheih Wu, Yue-Ie Caroline Hsing, Anthony H.C. Huang

Plant Physiol. Feb 2009, 149 (2) 694-707; DOI: https://doi.org/10.1104/pp.108.131128
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Multidrug and Toxic Compound Extrusion-Type Transporters Implicated in Vacuolar Sequestration of Nicotine in Tobacco Roots
Tsubasa Shoji, Koji Inai, Yoshiaki Yazaki, Yasutaka Sato, Hisabumi Takase, Nobukazu Shitan, Kazufumi Yazaki, Yumi Goto, Kiminori Toyooka, Ken Matsuoka, Takashi Hashimoto

Plant Physiol. Feb 2009, 149 (2) 708-718; DOI: https://doi.org/10.1104/pp.108.132811
Open Access
Myoinositol Oxygenase Controls the Level of Myoinositol in Arabidopsis, But Does Not Increase Ascorbic Acid
Stefanie Endres, Raimund Tenhaken

Plant Physiol. Feb 2009, 149 (2) 1042-1049; DOI: https://doi.org/10.1104/pp.108.130948
Open Access
CYP86A33-Targeted Gene Silencing in Potato Tuber Alters Suberin Composition, Distorts Suberin Lamellae, and Impairs the Periderm's Water Barrier Function
Olga Serra, Marçal Soler, Carolin Hohn, Vincent Sauveplane, Franck Pinot, Rochus Franke, Lukas Schreiber, Salomé Prat, Marisa Molinas, Mercè Figueras

Plant Physiol. Feb 2009, 149 (2) 1050-1060; DOI: https://doi.org/10.1104/pp.108.127183

BIOENERGETICS AND PHOTOSYNTHESIS

Open Access
Experimental Analysis of the Rice Mitochondrial Proteome, Its Biogenesis, and Heterogeneity
Shaobai Huang, Nicolas L. Taylor, Reena Narsai, Holger Eubel, James Whelan, A. Harvey Millar

Plant Physiol. Feb 2009, 149 (2) 719-734; DOI: https://doi.org/10.1104/pp.108.131300
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Thylakoid Membrane Reduction Affects the Photosystem Stoichiometry in the Cyanobacterium Synechocystis sp. PCC 6803
Eva Fuhrmann, Sven Gathmann, Eva Rupprecht, Jochen Golecki, Dirk Schneider

Plant Physiol. Feb 2009, 149 (2) 735-744; DOI: https://doi.org/10.1104/pp.108.132373
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The Zeaxanthin-Independent and Zeaxanthin-Dependent qE Components of Nonphotochemical Quenching Involve Common Conformational Changes within the Photosystem II Antenna in Arabidopsis
Matthew P. Johnson, María L. Pérez-Bueno, Ahmad Zia, Peter Horton, Alexander V. Ruban

Plant Physiol. Feb 2009, 149 (2) 1061-1075; DOI: https://doi.org/10.1104/pp.108.129957
Open Access
Psb28 Protein Is Involved in the Biogenesis of the Photosystem II Inner Antenna CP47 (PsbB) in the Cyanobacterium Synechocystis sp. PCC 6803
Marika Dobáková, Roman Sobotka, Martin Tichý, Josef Komenda

Plant Physiol. Feb 2009, 149 (2) 1076-1086; DOI: https://doi.org/10.1104/pp.108.130039
Open Access
Regulation of Respiration and Fermentation to Control the Plant Internal Oxygen Concentration
Ana Zabalza, Joost T. van Dongen, Anja Froehlich, Sandra N. Oliver, Benjamin Faix, Kapuganti Jagadis Gupta, Elmar Schmälzlin, Maria Igal, Luis Orcaray, Mercedes Royuela, Peter Geigenberger

Plant Physiol. Feb 2009, 149 (2) 1087-1098; DOI: https://doi.org/10.1104/pp.108.129288
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Reactive Oxygen Species Production by Potato Tuber Mitochondria Is Modulated by Mitochondrially Bound Hexokinase Activity
Juliana Camacho-Pereira, Laudiene Evangelista Meyer, Lilia Bender Machado, Marcus Fernandes Oliveira, Antonio Galina

Plant Physiol. Feb 2009, 149 (2) 1099-1110; DOI: https://doi.org/10.1104/pp.108.129247

CELL BIOLOGY AND SIGNAL TRANSDUCTION

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Role of the Rice Hexokinases OsHXK5 and OsHXK6 as Glucose Sensors
Jung-Il Cho, Nayeon Ryoo, Joon-Seob Eom, Dae-Woo Lee, Hyun-Bi Kim, Seok-Won Jeong, Youn-Hyung Lee, Yong-Kook Kwon, Man-Ho Cho, Seong Hee Bhoo, Tae-Ryong Hahn, Youn-Il Park, Ildoo Hwang, Jen Sheen, Jong-Seong Jeon

Plant Physiol. Feb 2009, 149 (2) 745-759; DOI: https://doi.org/10.1104/pp.108.131227
Open Access
Wheat Cryptochromes: Subcellular Localization and Involvement in Photomorphogenesis and Osmotic Stress Responses
Pei Xu, Yang Xiang, Huilan Zhu, Haibin Xu, Zhengzhi Zhang, Caiqin Zhang, Lixia Zhang, Zhengqiang Ma

Plant Physiol. Feb 2009, 149 (2) 760-774; DOI: https://doi.org/10.1104/pp.108.132217
Open Access
Ricinosomes Predict Programmed Cell Death Leading to Anther Dehiscence in Tomato
Adriano Senatore, Christopher P. Trobacher, John S. Greenwood

Plant Physiol. Feb 2009, 149 (2) 775-790; DOI: https://doi.org/10.1104/pp.108.132720
Open Access
A Pollen Protein, NaPCCP, That Binds Pistil Arabinogalactan Proteins Also Binds Phosphatidylinositol 3-Phosphate and Associates with the Pollen Tube Endomembrane System
Christopher B. Lee, Sunran Kim, Bruce McClure

Plant Physiol. Feb 2009, 149 (2) 791-802; DOI: https://doi.org/10.1104/pp.108.127936
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Combined Proteomic and Cytological Analysis of Ca²⁺-Calmodulin Regulation in Picea meyeri Pollen Tube Growth
Tong Chen, Xiaoqin Wu, Yanmei Chen, Xiaojuan Li, Mei Huang, Maozhong Zheng, František Baluška, Jozef Šamaj, Jinxing Lin

Plant Physiol. Feb 2009, 149 (2) 1111-1126; DOI: https://doi.org/10.1104/pp.108.127514
Open Access
Phosphatidylinositol (4,5)Bisphosphate Inhibits K⁺-Efflux Channel Activity in NT1 Tobacco Cultured Cells
Xiaohong Ma, Oded Shor, Sofia Diminshtein, Ling Yu, Yang Ju Im, Imara Perera, Aaron Lomax, Wendy F. Boss, Nava Moran

Plant Physiol. Feb 2009, 149 (2) 1127-1140; DOI: https://doi.org/10.1104/pp.108.129007

DEVELOPMENT AND HORMONE ACTION

Open Access
Alterations in the Endogenous Ascorbic Acid Content Affect Flowering Time in Arabidopsis
Simeon O. Kotchoni, Katherine E. Larrimore, Madhumati Mukherjee, Chase F. Kempinski, Carina Barth

Plant Physiol. Feb 2009, 149 (2) 803-815; DOI: https://doi.org/10.1104/pp.108.132324
Open Access
InPSR26, a Putative Membrane Protein, Regulates Programmed Cell Death during Petal Senescence in Japanese Morning Glory
Kenichi Shibuya, Tetsuya Yamada, Tomoko Suzuki, Keiichi Shimizu, Kazuo Ichimura

Plant Physiol. Feb 2009, 149 (2) 816-824; DOI: https://doi.org/10.1104/pp.108.127415
Open Access
High Humidity Induces Abscisic Acid 8′-Hydroxylase in Stomata and Vasculature to Regulate Local and Systemic Abscisic Acid Responses in Arabidopsis
Masanori Okamoto, Yoko Tanaka, Suzanne R. Abrams, Yuji Kamiya, Motoaki Seki, Eiji Nambara

Plant Physiol. Feb 2009, 149 (2) 825-834; DOI: https://doi.org/10.1104/pp.108.130823
Open Access
GNOM-Mediated Vesicular Trafficking Plays an Essential Role in Hydrotropism of Arabidopsis Roots
Yutaka Miyazawa, Akiko Takahashi, Akie Kobayashi, Tomoko Kaneyasu, Nobuharu Fujii, Hideyuki Takahashi

Plant Physiol. Feb 2009, 149 (2) 835-840; DOI: https://doi.org/10.1104/pp.108.131003
Open Access
Tissue Specificity and Evolution of Meristematic WOX3 Function
Rena Shimizu, Jiabing Ji, Eric Kelsey, Kazuhiro Ohtsu, Patrick S. Schnable, Michael J. Scanlon

Plant Physiol. Feb 2009, 149 (2) 841-850; DOI: https://doi.org/10.1104/pp.108.130765
Open Access
MYB108 Acts Together with MYB24 to Regulate Jasmonate-Mediated Stamen Maturation in Arabidopsis
Ajin Mandaokar, John Browse

Plant Physiol. Feb 2009, 149 (2) 851-862; DOI: https://doi.org/10.1104/pp.108.132597
Open Access
Karrikins Discovered in Smoke Trigger Arabidopsis Seed Germination by a Mechanism Requiring Gibberellic Acid Synthesis and Light
David C. Nelson, Julie-Anne Riseborough, Gavin R. Flematti, Jason Stevens, Emilio L. Ghisalberti, Kingsley W. Dixon, Steven M. Smith

Plant Physiol. Feb 2009, 149 (2) 863-873; DOI: https://doi.org/10.1104/pp.108.131516
Open Access
FZR2/CCS52A1 Expression Is a Determinant of Endoreduplication and Cell Expansion in Arabidopsis
Zachary Larson-Rabin, Ziyu Li, Patrick H. Masson, Christopher D. Day

Plant Physiol. Feb 2009, 149 (2) 874-884; DOI: https://doi.org/10.1104/pp.108.132449
Open Access
Autophagy Plays a Role in Chloroplast Degradation during Senescence in Individually Darkened Leaves
Shinya Wada, Hiroyuki Ishida, Masanori Izumi, Kohki Yoshimoto, Yoshinori Ohsumi, Tadahiko Mae, Amane Makino

Plant Physiol. Feb 2009, 149 (2) 885-893; DOI: https://doi.org/10.1104/pp.108.130013

ENVIRONMENTAL STRESS AND ADAPTATION TO STRESS

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AtHMA3, a P_1B-ATPase Allowing Cd/Zn/Co/Pb Vacuolar Storage in Arabidopsis
Mélanie Morel, Jérôme Crouzet, Antoine Gravot, Pascaline Auroy, Nathalie Leonhardt, Alain Vavasseur, Pierre Richaud

Plant Physiol. Feb 2009, 149 (2) 894-904; DOI: https://doi.org/10.1104/pp.108.130294
Open Access
Rice Aldehyde Dehydrogenase7 Is Needed for Seed Maturation and Viability
Jun-Hye Shin, Sung-Ryul Kim, Gynheung An

Plant Physiol. Feb 2009, 149 (2) 905-915; DOI: https://doi.org/10.1104/pp.108.130716
Open Access
Identification of an Apoplastic Protein Involved in the Initial Phase of Salt Stress Response in Rice Root by Two-Dimensional Electrophoresis
Lei Zhang, Li-Hong Tian, Jun-Feng Zhao, Yun Song, Cui-Jun Zhang, Yi Guo

Plant Physiol. Feb 2009, 149 (2) 916-928; DOI: https://doi.org/10.1104/pp.108.131144
Open Access
Thylakoid Lumen Carbonic Anhydrase (CAH3) Mutation Suppresses Air-Dier Phenotype of LCIB Mutant in Chlamydomonas reinhardtii
Deqiang Duanmu, Yingjun Wang, Martin H. Spalding

Plant Physiol. Feb 2009, 149 (2) 929-937; DOI: https://doi.org/10.1104/pp.108.132456
Open Access
Phytochelatin Synthesis Is Essential for the Detoxification of Excess Zinc and Contributes Significantly to the Accumulation of Zinc
Pierre Tennstedt, Daniel Peisker, Christoph Böttcher, Aleksandra Trampczynska, Stephan Clemens

Plant Physiol. Feb 2009, 149 (2) 938-948; DOI: https://doi.org/10.1104/pp.108.127472
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The Arabidopsis Abscisic Acid Catabolic Gene CYP707A2 Plays a Key Role in Nitrate Control of Seed Dormancy
Theodoros Matakiadis, Alessandro Alboresi, Yusuke Jikumaru, Kiyoshi Tatematsu, Olivier Pichon, Jean-Pierre Renou, Yuji Kamiya, Eiji Nambara, Hoai-Nam Truong

Plant Physiol. Feb 2009, 149 (2) 949-960; DOI: https://doi.org/10.1104/pp.108.126938
Open Access
NaCl-Induced Alternations of Cellular and Tissue Ion Fluxes in Roots of Salt-Resistant and Salt-Sensitive Poplar Species
Jian Sun, Shaoliang Chen, Songxiang Dai, Ruigang Wang, Niya Li, Xin Shen, Xiaoyang Zhou, Cunfu Lu, Xiaojiang Zheng, Zanmin Hu, Zengkai Zhang, Jin Song, Yue Xu

Plant Physiol. Feb 2009, 149 (2) 1141-1153; DOI: https://doi.org/10.1104/pp.108.129494
Open Access
Contrasting Responses of Photosynthesis to Salt Stress in the Glycophyte Arabidopsis and the Halophyte Thellungiella: Role of the Plastid Terminal Oxidase as an Alternative Electron Sink
Piotr Stepien, Giles N. Johnson

Plant Physiol. Feb 2009, 149 (2) 1154-1165; DOI: https://doi.org/10.1104/pp.108.132407

GENETICS, GENOMICS, AND MOLECULAR EVOLUTION

Open Access
Mapping Metabolic and Transcript Temporal Switches during Germination in Rice Highlights Specific Transcription Factors and the Role of RNA Instability in the Germination Process
Katharine A. Howell, Reena Narsai, Adam Carroll, Aneta Ivanova, Marc Lohse, Björn Usadel, A. Harvey Millar, James Whelan

Plant Physiol. Feb 2009, 149 (2) 961-980; DOI: https://doi.org/10.1104/pp.108.129874
Open Access
Expansion and Diversification of the Populus R2R3-MYB Family of Transcription Factors
Olivia Wilkins, Hardeep Nahal, Justin Foong, Nicholas J. Provart, Malcolm M. Campbell

Plant Physiol. Feb 2009, 149 (2) 981-993; DOI: https://doi.org/10.1104/pp.108.132795

PLANTS INTERACTING WITH OTHER ORGANISMS

Open Access
GS52 Ecto-Apyrase Plays a Critical Role during Soybean Nodulation
Manjula Govindarajulu, Sung-Yong Kim, Marc Libault, R. Howard Berg, Kiwamu Tanaka, Gary Stacey, Christopher G. Taylor

Plant Physiol. Feb 2009, 149 (2) 994-1004; DOI: https://doi.org/10.1104/pp.108.128728
Open Access
The Cauliflower Mosaic Virus Protein P6 Forms Motile Inclusions That Traffic along Actin Microfilaments and Stabilize Microtubules
Phillip A. Harries, Karuppaiah Palanichelvam, Weichang Yu, James E. Schoelz, Richard S. Nelson

Plant Physiol. Feb 2009, 149 (2) 1005-1016; DOI: https://doi.org/10.1104/pp.108.131755
Open Access
Xanthomonas campestris Overcomes Arabidopsis Stomatal Innate Immunity through a DSF Cell-to-Cell Signal-Regulated Virulence Factor
Gustavo E. Gudesblat, Pablo S. Torres, Adrián A. Vojnov

Plant Physiol. Feb 2009, 149 (2) 1017-1027; DOI: https://doi.org/10.1104/pp.108.126870
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Overexpression of Flavodoxin in Bacteroids Induces Changes in Antioxidant Metabolism Leading to Delayed Senescence and Starch Accumulation in Alfalfa Root Nodules
Francisco J. Redondo, Teodoro Coba de la Peña, César N. Morcillo, M. Mercedes Lucas, José J. Pueyo

Plant Physiol. Feb 2009, 149 (2) 1166-1178; DOI: https://doi.org/10.1104/pp.108.129601

WHOLE PLANT AND ECOPHYSIOLOGY

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De Novo Synthesis and Degradation of Lx and V Cycle Pigments during Shade and Sun Acclimation in Avocado Leaves
Britta Förster, C. Barry Osmond, Barry J. Pogson

Plant Physiol. Feb 2009, 149 (2) 1179-1195; DOI: https://doi.org/10.1104/pp.108.131417

SYSTEMS BIOLOGY, MOLECULAR BIOLOGY, AND GENE REGULATION

Open Access
Ectopic Expression of VvMybPA2 Promotes Proanthocyanidin Biosynthesis in Grapevine and Suggests Additional Targets in the Pathway
Nancy Terrier, Laurent Torregrosa, Agnès Ageorges, Sandrine Vialet, Clotilde Verriès, Véronique Cheynier, Charles Romieu

Plant Physiol. Feb 2009, 149 (2) 1028-1041; DOI: https://doi.org/10.1104/pp.108.131862
Open Access
Histone H2B Deubiquitination Is Required for Transcriptional Activation of FLOWERING LOCUS C and for Proper Control of Flowering in Arabidopsis
Robert Jeffrey Schmitz, Yosuke Tamada, Mark Robert Doyle, Xiaoyu Zhang, Richard Mark Amasino

Plant Physiol. Feb 2009, 149 (2) 1196-1204; DOI: https://doi.org/10.1104/pp.108.131508

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Table of Contents

ON THE INSIDE

UPDATES

BREAKTHROUGH TECHNOLOGIES

GENOME ANALYSIS

BIOCHEMICAL PROCESSES AND MACROMOLECULAR STRUCTURES

BIOENERGETICS AND PHOTOSYNTHESIS

CELL BIOLOGY AND SIGNAL TRANSDUCTION

DEVELOPMENT AND HORMONE ACTION

ENVIRONMENTAL STRESS AND ADAPTATION TO STRESS

GENETICS, GENOMICS, AND MOLECULAR EVOLUTION

PLANTS INTERACTING WITH OTHER ORGANISMS

WHOLE PLANT AND ECOPHYSIOLOGY

SYSTEMS BIOLOGY, MOLECULAR BIOLOGY, AND GENE REGULATION

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