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Table of Contents

Plant Physiology: 149 (2)
Feb 2009

ON THE INSIDE

  • You have accessRestricted Access
    On the Inside
    Peter V. Minorsky
    Plant Physiol. Feb 2009, 149 (2) 599-600; DOI: https://doi.org/10.1104/pp.104.900283

UPDATES

  • You have accessRestricted Access
    Advancing Cell Biology and Functional Genomics in Maize Using Fluorescent Protein-Tagged Lines
    Amitabh Mohanty, Anding Luo, Stacy DeBlasio, Xingyuan Ling, Yan Yang, Dorothy E. Tuthill, Katherine E. Williams, Daniel Hill, Tara Zadrozny, Agnes Chan, Anne W. Sylvester, David Jackson
    Plant Physiol. Feb 2009, 149 (2) 601-605; DOI: https://doi.org/10.1104/pp.108.130146
  • You have accessRestricted Access
    Disentangling the Complexity of Mitogen-Activated Protein Kinases and Reactive Oxygen Species Signaling
    Andrea Pitzschke, Heribert Hirt
    Plant Physiol. Feb 2009, 149 (2) 606-615; DOI: https://doi.org/10.1104/pp.108.131557

BREAKTHROUGH TECHNOLOGIES

  • Open Access
    Establishing RNA Interference as a Reverse-Genetic Approach for Gene Functional Analysis in Protoplasts
    Zhiyang Zhai, Thanwalee Sooksa-nguan, Olena K. Vatamaniuk
    Plant Physiol. Feb 2009, 149 (2) 642-652; DOI: https://doi.org/10.1104/pp.108.130260

GENOME ANALYSIS

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    Analysis of Site Frequency Spectra from Arabidopsis with Context-Dependent Corrections for Ancestral Misinference
    Brian R. Morton, Vaqaar-un-Nisa Dar, Stephen I. Wright
    Plant Physiol. Feb 2009, 149 (2) 616-624; DOI: https://doi.org/10.1104/pp.108.127787
  • Open Access
    Tissue-Specific Expression Patterns of Arabidopsis NF-Y Transcription Factors Suggest Potential for Extensive Combinatorial Complexity
    Nicholas Siefers, Kristen K. Dang, Roderick W. Kumimoto, William Edwards Bynum IV, Gregory Tayrose, Ben F. Holt III
    Plant Physiol. Feb 2009, 149 (2) 625-641; DOI: https://doi.org/10.1104/pp.108.130591

BIOCHEMICAL PROCESSES AND MACROMOLECULAR STRUCTURES

  • Open Access
    Decreased Mitochondrial Activities of Malate Dehydrogenase and Fumarase in Tomato Lead to Altered Root Growth and Architecture via Diverse Mechanisms
    Margaretha J. van der Merwe, Sonia Osorio, Thomas Moritz, Adriano Nunes-Nesi, Alisdair R. Fernie
    Plant Physiol. Feb 2009, 149 (2) 653-669; DOI: https://doi.org/10.1104/pp.108.130518
  • Open Access
    Establishment of a Protein Reference Map for Soybean Root Hair Cells
    Laurent Brechenmacher, Joohyun Lee, Sherri Sachdev, Zhao Song, Tran Hong Nha Nguyen, Trupti Joshi, Nathan Oehrle, Marc Libault, Brian Mooney, Dong Xu, Bret Cooper, Gary Stacey
    Plant Physiol. Feb 2009, 149 (2) 670-682; DOI: https://doi.org/10.1104/pp.108.131649
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    Molecular Cloning and Characterization of a cDNA for Pterocarpan 4-Dimethylallyltransferase Catalyzing the Key Prenylation Step in the Biosynthesis of Glyceollin, a Soybean Phytoalexin
    Tomoyoshi Akashi, Kanako Sasaki, Toshio Aoki, Shin-ichi Ayabe, Kazufumi Yazaki
    Plant Physiol. Feb 2009, 149 (2) 683-693; DOI: https://doi.org/10.1104/pp.108.123679
  • Open Access
    Analyses of Advanced Rice Anther Transcriptomes Reveal Global Tapetum Secretory Functions and Potential Proteins for Lipid Exine Formation
    Ming-Der Huang, Fu-Jin Wei, Cheng-Cheih Wu, Yue-Ie Caroline Hsing, Anthony H.C. Huang
    Plant Physiol. Feb 2009, 149 (2) 694-707; DOI: https://doi.org/10.1104/pp.108.131128
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    Multidrug and Toxic Compound Extrusion-Type Transporters Implicated in Vacuolar Sequestration of Nicotine in Tobacco Roots
    Tsubasa Shoji, Koji Inai, Yoshiaki Yazaki, Yasutaka Sato, Hisabumi Takase, Nobukazu Shitan, Kazufumi Yazaki, Yumi Goto, Kiminori Toyooka, Ken Matsuoka, Takashi Hashimoto
    Plant Physiol. Feb 2009, 149 (2) 708-718; DOI: https://doi.org/10.1104/pp.108.132811
  • Open Access
    Myoinositol Oxygenase Controls the Level of Myoinositol in Arabidopsis, But Does Not Increase Ascorbic Acid
    Stefanie Endres, Raimund Tenhaken
    Plant Physiol. Feb 2009, 149 (2) 1042-1049; DOI: https://doi.org/10.1104/pp.108.130948
  • Open Access
    CYP86A33-Targeted Gene Silencing in Potato Tuber Alters Suberin Composition, Distorts Suberin Lamellae, and Impairs the Periderm's Water Barrier Function
    Olga Serra, Marçal Soler, Carolin Hohn, Vincent Sauveplane, Franck Pinot, Rochus Franke, Lukas Schreiber, Salomé Prat, Marisa Molinas, Mercè Figueras
    Plant Physiol. Feb 2009, 149 (2) 1050-1060; DOI: https://doi.org/10.1104/pp.108.127183

BIOENERGETICS AND PHOTOSYNTHESIS

  • Open Access
    Experimental Analysis of the Rice Mitochondrial Proteome, Its Biogenesis, and Heterogeneity
    Shaobai Huang, Nicolas L. Taylor, Reena Narsai, Holger Eubel, James Whelan, A. Harvey Millar
    Plant Physiol. Feb 2009, 149 (2) 719-734; DOI: https://doi.org/10.1104/pp.108.131300
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    Thylakoid Membrane Reduction Affects the Photosystem Stoichiometry in the Cyanobacterium Synechocystis sp. PCC 6803
    Eva Fuhrmann, Sven Gathmann, Eva Rupprecht, Jochen Golecki, Dirk Schneider
    Plant Physiol. Feb 2009, 149 (2) 735-744; DOI: https://doi.org/10.1104/pp.108.132373
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    The Zeaxanthin-Independent and Zeaxanthin-Dependent qE Components of Nonphotochemical Quenching Involve Common Conformational Changes within the Photosystem II Antenna in Arabidopsis
    Matthew P. Johnson, María L. Pérez-Bueno, Ahmad Zia, Peter Horton, Alexander V. Ruban
    Plant Physiol. Feb 2009, 149 (2) 1061-1075; DOI: https://doi.org/10.1104/pp.108.129957
  • Open Access
    Psb28 Protein Is Involved in the Biogenesis of the Photosystem II Inner Antenna CP47 (PsbB) in the Cyanobacterium Synechocystis sp. PCC 6803
    Marika Dobáková, Roman Sobotka, Martin Tichý, Josef Komenda
    Plant Physiol. Feb 2009, 149 (2) 1076-1086; DOI: https://doi.org/10.1104/pp.108.130039
  • Open Access
    Regulation of Respiration and Fermentation to Control the Plant Internal Oxygen Concentration
    Ana Zabalza, Joost T. van Dongen, Anja Froehlich, Sandra N. Oliver, Benjamin Faix, Kapuganti Jagadis Gupta, Elmar Schmälzlin, Maria Igal, Luis Orcaray, Mercedes Royuela, Peter Geigenberger
    Plant Physiol. Feb 2009, 149 (2) 1087-1098; DOI: https://doi.org/10.1104/pp.108.129288
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    Reactive Oxygen Species Production by Potato Tuber Mitochondria Is Modulated by Mitochondrially Bound Hexokinase Activity
    Juliana Camacho-Pereira, Laudiene Evangelista Meyer, Lilia Bender Machado, Marcus Fernandes Oliveira, Antonio Galina
    Plant Physiol. Feb 2009, 149 (2) 1099-1110; DOI: https://doi.org/10.1104/pp.108.129247

CELL BIOLOGY AND SIGNAL TRANSDUCTION

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    Role of the Rice Hexokinases OsHXK5 and OsHXK6 as Glucose Sensors
    Jung-Il Cho, Nayeon Ryoo, Joon-Seob Eom, Dae-Woo Lee, Hyun-Bi Kim, Seok-Won Jeong, Youn-Hyung Lee, Yong-Kook Kwon, Man-Ho Cho, Seong Hee Bhoo, Tae-Ryong Hahn, Youn-Il Park, Ildoo Hwang, Jen Sheen, Jong-Seong Jeon
    Plant Physiol. Feb 2009, 149 (2) 745-759; DOI: https://doi.org/10.1104/pp.108.131227
  • Open Access
    Wheat Cryptochromes: Subcellular Localization and Involvement in Photomorphogenesis and Osmotic Stress Responses
    Pei Xu, Yang Xiang, Huilan Zhu, Haibin Xu, Zhengzhi Zhang, Caiqin Zhang, Lixia Zhang, Zhengqiang Ma
    Plant Physiol. Feb 2009, 149 (2) 760-774; DOI: https://doi.org/10.1104/pp.108.132217
  • Open Access
    Ricinosomes Predict Programmed Cell Death Leading to Anther Dehiscence in Tomato
    Adriano Senatore, Christopher P. Trobacher, John S. Greenwood
    Plant Physiol. Feb 2009, 149 (2) 775-790; DOI: https://doi.org/10.1104/pp.108.132720
  • Open Access
    A Pollen Protein, NaPCCP, That Binds Pistil Arabinogalactan Proteins Also Binds Phosphatidylinositol 3-Phosphate and Associates with the Pollen Tube Endomembrane System
    Christopher B. Lee, Sunran Kim, Bruce McClure
    Plant Physiol. Feb 2009, 149 (2) 791-802; DOI: https://doi.org/10.1104/pp.108.127936
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    Combined Proteomic and Cytological Analysis of Ca2+-Calmodulin Regulation in Picea meyeri Pollen Tube Growth
    Tong Chen, Xiaoqin Wu, Yanmei Chen, Xiaojuan Li, Mei Huang, Maozhong Zheng, František Baluška, Jozef Šamaj, Jinxing Lin
    Plant Physiol. Feb 2009, 149 (2) 1111-1126; DOI: https://doi.org/10.1104/pp.108.127514
  • Open Access
    Phosphatidylinositol (4,5)Bisphosphate Inhibits K+-Efflux Channel Activity in NT1 Tobacco Cultured Cells
    Xiaohong Ma, Oded Shor, Sofia Diminshtein, Ling Yu, Yang Ju Im, Imara Perera, Aaron Lomax, Wendy F. Boss, Nava Moran
    Plant Physiol. Feb 2009, 149 (2) 1127-1140; DOI: https://doi.org/10.1104/pp.108.129007

DEVELOPMENT AND HORMONE ACTION

  • Open Access
    Alterations in the Endogenous Ascorbic Acid Content Affect Flowering Time in Arabidopsis
    Simeon O. Kotchoni, Katherine E. Larrimore, Madhumati Mukherjee, Chase F. Kempinski, Carina Barth
    Plant Physiol. Feb 2009, 149 (2) 803-815; DOI: https://doi.org/10.1104/pp.108.132324
  • Open Access
    InPSR26, a Putative Membrane Protein, Regulates Programmed Cell Death during Petal Senescence in Japanese Morning Glory
    Kenichi Shibuya, Tetsuya Yamada, Tomoko Suzuki, Keiichi Shimizu, Kazuo Ichimura
    Plant Physiol. Feb 2009, 149 (2) 816-824; DOI: https://doi.org/10.1104/pp.108.127415
  • Open Access
    High Humidity Induces Abscisic Acid 8′-Hydroxylase in Stomata and Vasculature to Regulate Local and Systemic Abscisic Acid Responses in Arabidopsis
    Masanori Okamoto, Yoko Tanaka, Suzanne R. Abrams, Yuji Kamiya, Motoaki Seki, Eiji Nambara
    Plant Physiol. Feb 2009, 149 (2) 825-834; DOI: https://doi.org/10.1104/pp.108.130823
  • Open Access
    GNOM-Mediated Vesicular Trafficking Plays an Essential Role in Hydrotropism of Arabidopsis Roots
    Yutaka Miyazawa, Akiko Takahashi, Akie Kobayashi, Tomoko Kaneyasu, Nobuharu Fujii, Hideyuki Takahashi
    Plant Physiol. Feb 2009, 149 (2) 835-840; DOI: https://doi.org/10.1104/pp.108.131003
  • Open Access
    Tissue Specificity and Evolution of Meristematic WOX3 Function
    Rena Shimizu, Jiabing Ji, Eric Kelsey, Kazuhiro Ohtsu, Patrick S. Schnable, Michael J. Scanlon
    Plant Physiol. Feb 2009, 149 (2) 841-850; DOI: https://doi.org/10.1104/pp.108.130765
  • Open Access
    MYB108 Acts Together with MYB24 to Regulate Jasmonate-Mediated Stamen Maturation in Arabidopsis
    Ajin Mandaokar, John Browse
    Plant Physiol. Feb 2009, 149 (2) 851-862; DOI: https://doi.org/10.1104/pp.108.132597
  • Open Access
    Karrikins Discovered in Smoke Trigger Arabidopsis Seed Germination by a Mechanism Requiring Gibberellic Acid Synthesis and Light
    David C. Nelson, Julie-Anne Riseborough, Gavin R. Flematti, Jason Stevens, Emilio L. Ghisalberti, Kingsley W. Dixon, Steven M. Smith
    Plant Physiol. Feb 2009, 149 (2) 863-873; DOI: https://doi.org/10.1104/pp.108.131516
  • Open Access
    FZR2/CCS52A1 Expression Is a Determinant of Endoreduplication and Cell Expansion in Arabidopsis
    Zachary Larson-Rabin, Ziyu Li, Patrick H. Masson, Christopher D. Day
    Plant Physiol. Feb 2009, 149 (2) 874-884; DOI: https://doi.org/10.1104/pp.108.132449
  • Open Access
    Autophagy Plays a Role in Chloroplast Degradation during Senescence in Individually Darkened Leaves
    Shinya Wada, Hiroyuki Ishida, Masanori Izumi, Kohki Yoshimoto, Yoshinori Ohsumi, Tadahiko Mae, Amane Makino
    Plant Physiol. Feb 2009, 149 (2) 885-893; DOI: https://doi.org/10.1104/pp.108.130013

ENVIRONMENTAL STRESS AND ADAPTATION TO STRESS

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    AtHMA3, a P1B-ATPase Allowing Cd/Zn/Co/Pb Vacuolar Storage in Arabidopsis
    Mélanie Morel, Jérôme Crouzet, Antoine Gravot, Pascaline Auroy, Nathalie Leonhardt, Alain Vavasseur, Pierre Richaud
    Plant Physiol. Feb 2009, 149 (2) 894-904; DOI: https://doi.org/10.1104/pp.108.130294
  • Open Access
    Rice Aldehyde Dehydrogenase7 Is Needed for Seed Maturation and Viability
    Jun-Hye Shin, Sung-Ryul Kim, Gynheung An
    Plant Physiol. Feb 2009, 149 (2) 905-915; DOI: https://doi.org/10.1104/pp.108.130716
  • Open Access
    Identification of an Apoplastic Protein Involved in the Initial Phase of Salt Stress Response in Rice Root by Two-Dimensional Electrophoresis
    Lei Zhang, Li-Hong Tian, Jun-Feng Zhao, Yun Song, Cui-Jun Zhang, Yi Guo
    Plant Physiol. Feb 2009, 149 (2) 916-928; DOI: https://doi.org/10.1104/pp.108.131144
  • Open Access
    Thylakoid Lumen Carbonic Anhydrase (CAH3) Mutation Suppresses Air-Dier Phenotype of LCIB Mutant in Chlamydomonas reinhardtii
    Deqiang Duanmu, Yingjun Wang, Martin H. Spalding
    Plant Physiol. Feb 2009, 149 (2) 929-937; DOI: https://doi.org/10.1104/pp.108.132456
  • Open Access
    Phytochelatin Synthesis Is Essential for the Detoxification of Excess Zinc and Contributes Significantly to the Accumulation of Zinc
    Pierre Tennstedt, Daniel Peisker, Christoph Böttcher, Aleksandra Trampczynska, Stephan Clemens
    Plant Physiol. Feb 2009, 149 (2) 938-948; DOI: https://doi.org/10.1104/pp.108.127472
  • You have accessRestricted Access
    The Arabidopsis Abscisic Acid Catabolic Gene CYP707A2 Plays a Key Role in Nitrate Control of Seed Dormancy
    Theodoros Matakiadis, Alessandro Alboresi, Yusuke Jikumaru, Kiyoshi Tatematsu, Olivier Pichon, Jean-Pierre Renou, Yuji Kamiya, Eiji Nambara, Hoai-Nam Truong
    Plant Physiol. Feb 2009, 149 (2) 949-960; DOI: https://doi.org/10.1104/pp.108.126938
  • Open Access
    NaCl-Induced Alternations of Cellular and Tissue Ion Fluxes in Roots of Salt-Resistant and Salt-Sensitive Poplar Species
    Jian Sun, Shaoliang Chen, Songxiang Dai, Ruigang Wang, Niya Li, Xin Shen, Xiaoyang Zhou, Cunfu Lu, Xiaojiang Zheng, Zanmin Hu, Zengkai Zhang, Jin Song, Yue Xu
    Plant Physiol. Feb 2009, 149 (2) 1141-1153; DOI: https://doi.org/10.1104/pp.108.129494
  • Open Access
    Contrasting Responses of Photosynthesis to Salt Stress in the Glycophyte Arabidopsis and the Halophyte Thellungiella: Role of the Plastid Terminal Oxidase as an Alternative Electron Sink
    Piotr Stepien, Giles N. Johnson
    Plant Physiol. Feb 2009, 149 (2) 1154-1165; DOI: https://doi.org/10.1104/pp.108.132407

GENETICS, GENOMICS, AND MOLECULAR EVOLUTION

  • Open Access
    Mapping Metabolic and Transcript Temporal Switches during Germination in Rice Highlights Specific Transcription Factors and the Role of RNA Instability in the Germination Process
    Katharine A. Howell, Reena Narsai, Adam Carroll, Aneta Ivanova, Marc Lohse, Björn Usadel, A. Harvey Millar, James Whelan
    Plant Physiol. Feb 2009, 149 (2) 961-980; DOI: https://doi.org/10.1104/pp.108.129874
  • Open Access
    Expansion and Diversification of the Populus R2R3-MYB Family of Transcription Factors
    Olivia Wilkins, Hardeep Nahal, Justin Foong, Nicholas J. Provart, Malcolm M. Campbell
    Plant Physiol. Feb 2009, 149 (2) 981-993; DOI: https://doi.org/10.1104/pp.108.132795

PLANTS INTERACTING WITH OTHER ORGANISMS

  • Open Access
    GS52 Ecto-Apyrase Plays a Critical Role during Soybean Nodulation
    Manjula Govindarajulu, Sung-Yong Kim, Marc Libault, R. Howard Berg, Kiwamu Tanaka, Gary Stacey, Christopher G. Taylor
    Plant Physiol. Feb 2009, 149 (2) 994-1004; DOI: https://doi.org/10.1104/pp.108.128728
  • Open Access
    The Cauliflower Mosaic Virus Protein P6 Forms Motile Inclusions That Traffic along Actin Microfilaments and Stabilize Microtubules
    Phillip A. Harries, Karuppaiah Palanichelvam, Weichang Yu, James E. Schoelz, Richard S. Nelson
    Plant Physiol. Feb 2009, 149 (2) 1005-1016; DOI: https://doi.org/10.1104/pp.108.131755
  • Open Access
    Xanthomonas campestris Overcomes Arabidopsis Stomatal Innate Immunity through a DSF Cell-to-Cell Signal-Regulated Virulence Factor
    Gustavo E. Gudesblat, Pablo S. Torres, Adrián A. Vojnov
    Plant Physiol. Feb 2009, 149 (2) 1017-1027; DOI: https://doi.org/10.1104/pp.108.126870
  • You have accessRestricted Access
    Overexpression of Flavodoxin in Bacteroids Induces Changes in Antioxidant Metabolism Leading to Delayed Senescence and Starch Accumulation in Alfalfa Root Nodules
    Francisco J. Redondo, Teodoro Coba de la Peña, César N. Morcillo, M. Mercedes Lucas, José J. Pueyo
    Plant Physiol. Feb 2009, 149 (2) 1166-1178; DOI: https://doi.org/10.1104/pp.108.129601

WHOLE PLANT AND ECOPHYSIOLOGY

  • You have accessRestricted Access
    De Novo Synthesis and Degradation of Lx and V Cycle Pigments during Shade and Sun Acclimation in Avocado Leaves
    Britta Förster, C. Barry Osmond, Barry J. Pogson
    Plant Physiol. Feb 2009, 149 (2) 1179-1195; DOI: https://doi.org/10.1104/pp.108.131417

SYSTEMS BIOLOGY, MOLECULAR BIOLOGY, AND GENE REGULATION

  • Open Access
    Ectopic Expression of VvMybPA2 Promotes Proanthocyanidin Biosynthesis in Grapevine and Suggests Additional Targets in the Pathway
    Nancy Terrier, Laurent Torregrosa, Agnès Ageorges, Sandrine Vialet, Clotilde Verriès, Véronique Cheynier, Charles Romieu
    Plant Physiol. Feb 2009, 149 (2) 1028-1041; DOI: https://doi.org/10.1104/pp.108.131862
  • Open Access
    Histone H2B Deubiquitination Is Required for Transcriptional Activation of FLOWERING LOCUS C and for Proper Control of Flowering in Arabidopsis
    Robert Jeffrey Schmitz, Yosuke Tamada, Mark Robert Doyle, Xiaoyu Zhang, Richard Mark Amasino
    Plant Physiol. Feb 2009, 149 (2) 1196-1204; DOI: https://doi.org/10.1104/pp.108.131508
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Plant Physiology: 149 (2)
Plant Physiology
Vol. 149, Issue 2
February 2009
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  • ON THE INSIDE
  • UPDATES
  • BREAKTHROUGH TECHNOLOGIES
  • GENOME ANALYSIS
  • BIOCHEMICAL PROCESSES AND MACROMOLECULAR STRUCTURES
  • BIOENERGETICS AND PHOTOSYNTHESIS
  • CELL BIOLOGY AND SIGNAL TRANSDUCTION
  • DEVELOPMENT AND HORMONE ACTION
  • ENVIRONMENTAL STRESS AND ADAPTATION TO STRESS
  • GENETICS, GENOMICS, AND MOLECULAR EVOLUTION
  • PLANTS INTERACTING WITH OTHER ORGANISMS
  • WHOLE PLANT AND ECOPHYSIOLOGY
  • SYSTEMS BIOLOGY, MOLECULAR BIOLOGY, AND GENE REGULATION

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