Plant Physiology: 152 (2)

Feb 2010

EDITORIALS - FOCUS ISSUE

You have accessRestricted Access
Plant Systems Biology
Jacques Joyard, Sheila McCormick

Plant Physiol. Feb 2010, 152 (2) 401; DOI: https://doi.org/10.1104/pp.110.900314

UPDATES - FOCUS ISSUE

You have accessRestricted Access
Gene Expression Analysis, Proteomics, and Network Discovery
Sacha Baginsky, Lars Hennig, Philip Zimmermann, Wilhelm Gruissem

Plant Physiol. Feb 2010, 152 (2) 402-410; DOI: https://doi.org/10.1104/pp.109.150433
You have accessRestricted Access
Systems Biology Update: Cell Type-Specific Transcriptional Regulatory Networks
Li Pu, Siobhan Brady

Plant Physiol. Feb 2010, 152 (2) 411-419; DOI: https://doi.org/10.1104/pp.109.148668
You have accessRestricted Access
Systems Biology of Organ Initiation at the Shoot Apex
Jan Traas, Françoise Monéger

Plant Physiol. Feb 2010, 152 (2) 420-427; DOI: https://doi.org/10.1104/pp.109.150409
You have accessRestricted Access
Metabolic Networks: How to Identify Key Components in the Regulation of Metabolism and Growth
Mark Stitt, Ronan Sulpice, Joost Keurentjes

Plant Physiol. Feb 2010, 152 (2) 428-444; DOI: https://doi.org/10.1104/pp.109.150821
You have accessRestricted Access
A Systems View of Responses to Nutritional Cues in Arabidopsis: Toward a Paradigm Shift for Predictive Network Modeling
Sandrine Ruffel, Gabriel Krouk, Gloria M. Coruzzi

Plant Physiol. Feb 2010, 152 (2) 445-452; DOI: https://doi.org/10.1104/pp.109.148502
You have accessRestricted Access
Signaling between Chloroplasts and the Nucleus: Can a Systems Biology Approach Bring Clarity to a Complex and Highly Regulated Pathway?
Hou-Sung Jung, Joanne Chory

Plant Physiol. Feb 2010, 152 (2) 453-459; DOI: https://doi.org/10.1104/pp.109.149070
You have accessRestricted Access
Bioinformatic and Systems Biology Tools to Generate Testable Models of Signaling Pathways and Their Targets
Andrea Pitzschke, Heribert Hirt

Plant Physiol. Feb 2010, 152 (2) 460-469; DOI: https://doi.org/10.1104/pp.109.149583
You have accessRestricted Access
Hope for Humpty Dumpty: Systems Biology of Cellular Signaling
Sarah M. Assmann

Plant Physiol. Feb 2010, 152 (2) 470-479; DOI: https://doi.org/10.1104/pp.109.151266
You have accessRestricted Access
Systems Biology Uncovers the Foundation of Natural Genetic Diversity
Daniel J. Kliebenstein

Plant Physiol. Feb 2010, 152 (2) 480-486; DOI: https://doi.org/10.1104/pp.109.149328

BREAKTHROUGH TECHNOLOGIES - FOCUS ISSUE

Open Access
AGRONOMICS1: A New Resource for Arabidopsis Transcriptome Profiling
Hubert Rehrauer, Catharine Aquino, Wilhelm Gruissem, Stefan R. Henz, Pierre Hilson, Sascha Laubinger, Naira Naouar, Andrea Patrignani, Stephane Rombauts, Huan Shu, Yves Van de Peer, Marnik Vuylsteke, Detlef Weigel, Georg Zeller, Lars Hennig

Plant Physiol. Feb 2010, 152 (2) 487-499; DOI: https://doi.org/10.1104/pp.109.150185

BIOINFORMATICS - FOCUS ISSUE

Open Access
VirtualPlant: A Software Platform to Support Systems Biology Research
Manpreet S. Katari, Steve D. Nowicki, Felipe F. Aceituno, Damion Nero, Jonathan Kelfer, Lee Parnell Thompson, Juan M. Cabello, Rebecca S. Davidson, Arthur P. Goldberg, Dennis E. Shasha, Gloria M. Coruzzi, Rodrigo A. Gutiérrez

Plant Physiol. Feb 2010, 152 (2) 500-515; DOI: https://doi.org/10.1104/pp.109.147025

Research Articles

Open Access
Epigenetic Regulation of Gene Programs by EMF1 and EMF2 in Arabidopsis
Sang Yeol Kim, T. Zhu, Z. Renee Sung

Plant Physiol. Feb 2010, 152 (2) 516-528; DOI: https://doi.org/10.1104/pp.109.143495
Open Access
Large-Scale Reverse Genetics in Arabidopsis: Case Studies from the Chloroplast 2010 Project
Imad Ajjawi, Yan Lu, Linda J. Savage, Shannon M. Bell, Robert L. Last

Plant Physiol. Feb 2010, 152 (2) 529-540; DOI: https://doi.org/10.1104/pp.109.148494
Open Access
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Marc Libault, Andrew Farmer, Laurent Brechenmacher, Jenny Drnevich, Raymond J. Langley, Damla D. Bilgin, Osman Radwan, David J. Neece, Steven J. Clough, Gregory D. May, Gary Stacey

Plant Physiol. Feb 2010, 152 (2) 541-552; DOI: https://doi.org/10.1104/pp.109.148379
Open Access
Systematic Localization of the Arabidopsis Core Cell Cycle Proteins Reveals Novel Cell Division Complexes
Joanna Boruc, Evelien Mylle, Maria Duda, Rebecca De Clercq, Stephane Rombauts, Danny Geelen, Pierre Hilson, Dirk Inzé, Daniel Van Damme, Eugenia Russinova

Plant Physiol. Feb 2010, 152 (2) 553-565; DOI: https://doi.org/10.1104/pp.109.148643
Open Access
AtMetExpress Development: A Phytochemical Atlas of Arabidopsis Development
Fumio Matsuda, Masami Y. Hirai, Eriko Sasaki, Kenji Akiyama, Keiko Yonekura-Sakakibara, Nicholas J. Provart, Tetsuya Sakurai, Yukihisa Shimada, Kazuki Saito

Plant Physiol. Feb 2010, 152 (2) 566-578; DOI: https://doi.org/10.1104/pp.109.148031
You have accessRestricted Access
AraGEM, a Genome-Scale Reconstruction of the Primary Metabolic Network in Arabidopsis
Cristiana Gomes de Oliveira Dal'Molin, Lake-Ee Quek, Robin William Palfreyman, Stevens Michael Brumbley, Lars Keld Nielsen

Plant Physiol. Feb 2010, 152 (2) 579-589; DOI: https://doi.org/10.1104/pp.109.148817
Open Access
A Systems Model of Vesicle Trafficking in Arabidopsis Pollen Tubes
Naohiro Kato, Hongyu He, Alexander P. Steger

Plant Physiol. Feb 2010, 152 (2) 590-601; DOI: https://doi.org/10.1104/pp.109.148700
Open Access
Subcellular Flux Analysis of Central Metabolism in a Heterotrophic Arabidopsis Cell Suspension Using Steady-State Stable Isotope Labeling
Shyam K. Masakapalli, Pascaline Le Lay, Joanna E. Huddleston, Naomi L. Pollock, Nicholas J. Kruger, R. George Ratcliffe

Plant Physiol. Feb 2010, 152 (2) 602-619; DOI: https://doi.org/10.1104/pp.109.151316

ON THE INSIDE

You have accessRestricted Access
On the Inside
Peter V. Minorsky

Plant Physiol. Feb 2010, 152 (2) 620-621; DOI: https://doi.org/10.1104/pp.110.900315

BREAKTHROUGH TECHNOLOGIES

Open Access
Hydrophobin Fusions for High-Level Transient Protein Expression and Purification in Nicotiana benthamiana
Jussi J. Joensuu, Andrew J. Conley, Michael Lienemann, Jim E. Brandle, Markus B. Linder, Rima Menassa

Plant Physiol. Feb 2010, 152 (2) 622-633; DOI: https://doi.org/10.1104/pp.109.149021

SCIENTIFIC CORRESPONDENCE

You have accessRestricted Access
Phosphoenolpyruvate Carboxylase from C₄ Leaves Is Selectively Targeted for Inhibition by Anionic Phospholipids
José A. Monreal, Fionn McLoughlin, Cristina Echevarría, Sofía García-Mauriño, Christa Testerink

Plant Physiol. Feb 2010, 152 (2) 634-638; DOI: https://doi.org/10.1104/pp.109.150326

BIOCHEMICAL PROCESSES AND MACROMOLECULAR STRUCTURES

Open Access
A Bifunctional Geranyl and Geranylgeranyl Diphosphate Synthase Is Involved in Terpene Oleoresin Formation in Picea abies
Axel Schmidt, Betty Wächtler, Ulrike Temp, Trygve Krekling, Armand Séguin, Jonathan Gershenzon

Plant Physiol. Feb 2010, 152 (2) 639-655; DOI: https://doi.org/10.1104/pp.109.144691
You have accessRestricted Access
An O-Acetylserine(thiol)lyase Homolog with l-Cysteine Desulfhydrase Activity Regulates Cysteine Homeostasis in Arabidopsis
Consolación Álvarez, Leticia Calo, Luis C. Romero, Irene García, Cecilia Gotor

Plant Physiol. Feb 2010, 152 (2) 656-669; DOI: https://doi.org/10.1104/pp.109.147975
You have accessRestricted Access
Expression of Rapeseed Microsomal Lysophosphatidic Acid Acyltransferase Isozymes Enhances Seed Oil Content in Arabidopsis
Sylvie Maisonneuve, Jean-Jacques Bessoule, René Lessire, Michel Delseny, Thomas J. Roscoe

Plant Physiol. Feb 2010, 152 (2) 670-684; DOI: https://doi.org/10.1104/pp.109.148247
Open Access
A Putative Phosphatase, LSF1, Is Required for Normal Starch Turnover in Arabidopsis Leaves
Sylviane Comparot-Moss, Oliver Kötting, Michaela Stettler, Christoph Edner, Alexander Graf, Sean E. Weise, Sebastian Streb, Wei-Ling Lue, Daniel MacLean, Sebastian Mahlow, Gerhard Ritte, Martin Steup, Jychian Chen, Samuel C. Zeeman, Alison M. Smith

Plant Physiol. Feb 2010, 152 (2) 685-697; DOI: https://doi.org/10.1104/pp.109.148981
You have accessRestricted Access
Increasing Sucrose Uptake Capacity of Wheat Grains Stimulates Storage Protein Synthesis
Nicola Weichert, Isolde Saalbach, Heiko Weichert, Stefan Kohl, Alexander Erban, Joachim Kopka, Bettina Hause, Alok Varshney, Nese Sreenivasulu, Marc Strickert, Jochen Kumlehn, Winfriede Weschke, Hans Weber

Plant Physiol. Feb 2010, 152 (2) 698-710; DOI: https://doi.org/10.1104/pp.109.150854
You have accessRestricted Access
The Laforin-Like Dual-Specificity Phosphatase SEX4 from Arabidopsis Hydrolyzes Both C6- and C3-Phosphate Esters Introduced by Starch-Related Dikinases and Thereby Affects Phase Transition of α-Glucans
Mahdi Hejazi, Joerg Fettke, Oliver Kötting, Samuel C. Zeeman, Martin Steup

Plant Physiol. Feb 2010, 152 (2) 711-722; DOI: https://doi.org/10.1104/pp.109.149914
Open Access
Studies of the Kinetic Mechanism of Maize Endosperm ADP-Glucose Pyrophosphorylase Uncovered Complex Regulatory Properties
Susan K. Boehlein, Janine R. Shaw, Jon D. Stewart, L. Curtis Hannah

Plant Physiol. Feb 2010, 152 (2) 1056-1064; DOI: https://doi.org/10.1104/pp.109.149450

BIOENERGETICS AND PHOTOSYNTHESIS

Open Access
Thylakoid Protein Phosphorylation in Higher Plant Chloroplasts Optimizes Electron Transfer under Fluctuating Light
Mikko Tikkanen, Michele Grieco, Saijaliisa Kangasjärvi, Eva-Mari Aro

Plant Physiol. Feb 2010, 152 (2) 723-735; DOI: https://doi.org/10.1104/pp.109.150250
Open Access
Oscillatory Growth in Lily Pollen Tubes Does Not Require Aerobic Energy Metabolism
Caleb M. Rounds, Peter K. Hepler, Sasha J. Fuller, Lawrence J. Winship

Plant Physiol. Feb 2010, 152 (2) 736-746; DOI: https://doi.org/10.1104/pp.109.150896
Open Access
Divalent Metal Ions in Plant Mitochondria and Their Role in Interactions with Proteins and Oxidative Stress-Induced Damage to Respiratory Function
Yew-Foon Tan, Nicholas O'Toole, Nicolas L. Taylor, A. Harvey Millar

Plant Physiol. Feb 2010, 152 (2) 747-761; DOI: https://doi.org/10.1104/pp.109.147942
Open Access
Stimulation of Nonselective Amino Acid Export by Glutamine Dumper Proteins
Réjane Pratelli, Lars M. Voll, Robin J. Horst, Wolf B. Frommer, Guillaume Pilot

Plant Physiol. Feb 2010, 152 (2) 762-773; DOI: https://doi.org/10.1104/pp.109.151746

CELL BIOLOGY AND SIGNAL TRANSDUCTION

You have accessRestricted Access
WallGen, Software to Construct Layered Cellulose-Hemicellulose Networks and Predict Their Small Deformation Mechanics
Hung Kha, Sigrid C. Tuble, Shankar Kalyanasundaram, Richard E. Williamson

Plant Physiol. Feb 2010, 152 (2) 774-786; DOI: https://doi.org/10.1104/pp.109.146936
Open Access
Real-Time Imaging of Cellulose Reorientation during Cell Wall Expansion in Arabidopsis Roots
Charles T. Anderson, Andrew Carroll, Laila Akhmetova, Chris Somerville

Plant Physiol. Feb 2010, 152 (2) 787-796; DOI: https://doi.org/10.1104/pp.109.150128
Open Access
Flexibility contra Stiffness: The Phragmoplast as a Physical Barrier for Beads But Not for Vesicles
Agnieszka Esseling-Ozdoba, Richard A. Kik, André A.M. van Lammeren, J. Mieke Kleijn, Anne Mie C. Emons

Plant Physiol. Feb 2010, 152 (2) 1065-1072; DOI: https://doi.org/10.1104/pp.109.150417
Open Access
Apyrase (Nucleoside Triphosphate-Diphosphohydrolase) and Extracellular Nucleotides Regulate Cotton Fiber Elongation in Cultured Ovules
Greg Clark, Jonathan Torres, Scott Finlayson, Xueying Guan, Craig Handley, Jinsuk Lee, Julia E. Kays, Z. Jeffery Chen, Stanley J. Roux

Plant Physiol. Feb 2010, 152 (2) 1073-1083; DOI: https://doi.org/10.1104/pp.109.147637

DEVELOPMENT AND HORMONE ACTION

Open Access
The REDUCED LEAFLET Genes Encode Key Components of the trans-Acting Small Interfering RNA Pathway and Regulate Compound Leaf and Flower Development in Lotus japonicus
Jun Yan, Xuefei Cai, Jianghong Luo, Shusei Sato, Qunyi Jiang, Jun Yang, Xiangling Cao, Xiaohe Hu, Satoshi Tabata, Peter M. Gresshoff, Da Luo

Plant Physiol. Feb 2010, 152 (2) 797-807; DOI: https://doi.org/10.1104/pp.109.140947
Open Access
The Role of Casein Kinase II in Flowering Time Regulation Has Diversified during Evolution
Eri Ogiso, Yuji Takahashi, Takuji Sasaki, Masahiro Yano, Takeshi Izawa

Plant Physiol. Feb 2010, 152 (2) 808-820; DOI: https://doi.org/10.1104/pp.109.148908
Open Access
SEUSS and SEUSS-LIKE Transcriptional Adaptors Regulate Floral and Embryonic Development in Arabidopsis
Fang Bao, Sridevi Azhakanandam, Robert G. Franks

Plant Physiol. Feb 2010, 152 (2) 821-836; DOI: https://doi.org/10.1104/pp.109.146183
You have accessRestricted Access
Characterization of the Possible Roles for B Class MADS Box Genes in Regulation of Perianth Formation in Orchid
Yu-Yun Chang, Nai-Hsuan Kao, Jen-Ying Li, Wei-Han Hsu, Yu-Ling Liang, Jia-Wei Wu, Chang-Hsien Yang

Plant Physiol. Feb 2010, 152 (2) 837-853; DOI: https://doi.org/10.1104/pp.109.147116

ENVIRONMENTAL STRESS AND ADAPTATION TO STRESS

Open Access
Biochemical and Molecular Characterization of PvPAP3, a Novel Purple Acid Phosphatase Isolated from Common Bean Enhancing Extracellular ATP Utilization
Cuiyue Liang, Jiang Tian, Hon-Ming Lam, Boon Leong Lim, Xiaolong Yan, Hong Liao

Plant Physiol. Feb 2010, 152 (2) 854-865; DOI: https://doi.org/10.1104/pp.109.147918
Open Access
Arabidopsis Deadenylases AtCAF1a and AtCAF1b Play Overlapping and Distinct Roles in Mediating Environmental Stress Responses
Justin W. Walley, Dior R. Kelley, Gergana Nestorova, David L. Hirschberg, Katayoon Dehesh

Plant Physiol. Feb 2010, 152 (2) 866-875; DOI: https://doi.org/10.1104/pp.109.149005
Open Access
A Raf-Like MAPKKK Gene DSM1 Mediates Drought Resistance through Reactive Oxygen Species Scavenging in Rice
Jing Ning, Xianghua Li, Leslie M. Hicks, Lizhong Xiong

Plant Physiol. Feb 2010, 152 (2) 876-890; DOI: https://doi.org/10.1104/pp.109.149856
You have accessRestricted Access
Enhanced Abscisic Acid-Mediated Responses in nia1nia2noa1-2 Triple Mutant Impaired in NIA/NR- and AtNOA1-Dependent Nitric Oxide Biosynthesis in Arabidopsis
Jorge Lozano-Juste, José León

Plant Physiol. Feb 2010, 152 (2) 891-903; DOI: https://doi.org/10.1104/pp.109.148023
Open Access
Chitinase-Like Protein CTL1 Plays a Role in Altering Root System Architecture in Response to Multiple Environmental Conditions
Christian Hermans, Silvana Porco, Nathalie Verbruggen, Daniel R. Bush

Plant Physiol. Feb 2010, 152 (2) 904-917; DOI: https://doi.org/10.1104/pp.109.149849
Open Access
Gravity-Induced Modifications to Development in Hypocotyls of Arabidopsis Tubulin Mutants
Shouhei Matsumoto, Saori Kumasaki, Kouichi Soga, Kazuyuki Wakabayashi, Takashi Hashimoto, Takayuki Hoson

Plant Physiol. Feb 2010, 152 (2) 918-926; DOI: https://doi.org/10.1104/pp.109.147330

GENETICS, GENOMICS, AND MOLECULAR EVOLUTION

Open Access
Aneuploidy Causes Tissue-Specific Qualitative Changes in Global Gene Expression Patterns in Maize
Irina Makarevitch, Carolyn Harris

Plant Physiol. Feb 2010, 152 (2) 927-938; DOI: https://doi.org/10.1104/pp.109.150466
Open Access
MEF9, an E-Subclass Pentatricopeptide Repeat Protein, Is Required for an RNA Editing Event in the nad7 Transcript in Mitochondria of Arabidopsis
Mizuki Takenaka

Plant Physiol. Feb 2010, 152 (2) 939-947; DOI: https://doi.org/10.1104/pp.109.151175

PLANTS INTERACTING WITH OTHER ORGANISMS

Open Access
The Pepper 9-Lipoxygenase Gene CaLOX1 Functions in Defense and Cell Death Responses to Microbial Pathogens
In Sun Hwang, Byung Kook Hwang

Plant Physiol. Feb 2010, 152 (2) 948-967; DOI: https://doi.org/10.1104/pp.109.147827
Open Access
Arabidopsis Spermidine Synthase Is Targeted by an Effector Protein of the Cyst Nematode Heterodera schachtii
Tarek Hewezi, Peter J. Howe, Tom R. Maier, Richard S. Hussey, Melissa G. Mitchum, Eric L. Davis, Thomas J. Baum

Plant Physiol. Feb 2010, 152 (2) 968-984; DOI: https://doi.org/10.1104/pp.109.150557
Open Access
Reactive Oxygen Species Are Involved in Plant Defense against a Gall Midge
Xuming Liu, Christie E. Williams, Jill A. Nemacheck, Haiyan Wang, Subhashree Subramanyam, Cheng Zheng, Ming-Shun Chen

Plant Physiol. Feb 2010, 152 (2) 985-999; DOI: https://doi.org/10.1104/pp.109.150656
You have accessRestricted Access
Knockdown of the Symbiotic Sucrose Synthase MtSucS1 Affects Arbuscule Maturation and Maintenance in Mycorrhizal Roots of Medicago truncatula
Markus Christian Baier, Matthias Keck, Victoria Gödde, Karsten Niehaus, Helge Küster, Natalija Hohnjec

Plant Physiol. Feb 2010, 152 (2) 1000-1014; DOI: https://doi.org/10.1104/pp.109.149898
Open Access
Novel Bifunctional Nucleases, OmBBD and AtBBD1, Are Involved in Abscisic Acid-Mediated Callose Deposition in Arabidopsis
Min Kyoung You, Hyun Young Shin, Young Jin Kim, Sung Han Ok, Sung Ki Cho, Ji Ung Jeung, Sang Dong Yoo, Jeong Kook Kim, Jeong Sheop Shin

Plant Physiol. Feb 2010, 152 (2) 1015-1029; DOI: https://doi.org/10.1104/pp.109.147645
Open Access
Jasmonate-Dependent and -Independent Pathways Mediate Specific Effects of Solar Ultraviolet B Radiation on Leaf Phenolics and Antiherbivore Defense
Patricia V. Demkura, Guillermina Abdala, Ian T. Baldwin, Carlos L. Ballaré

Plant Physiol. Feb 2010, 152 (2) 1084-1095; DOI: https://doi.org/10.1104/pp.109.148999

WHOLE PLANT AND ECOPHYSIOLOGY

Open Access
Tracing Cationic Nutrients from Xylem into Stem Tissue of French Bean by Stable Isotope Tracers and Cryo-Secondary Ion Mass Spectrometry
Ralf Metzner, Heike Ursula Schneider, Uwe Breuer, Michael Robert Thorpe, Ulrich Schurr, Walter Heinz Schroeder

Plant Physiol. Feb 2010, 152 (2) 1030-1043; DOI: https://doi.org/10.1104/pp.109.143776

SYSTEMS BIOLOGY, MOLECULAR BIOLOGY, AND GENE REGULATION

Open Access
Functional Characterization of Poplar Wood-Associated NAC Domain Transcription Factors
Ruiqin Zhong, Chanhui Lee, Zheng-Hua Ye

Plant Physiol. Feb 2010, 152 (2) 1044-1055; DOI: https://doi.org/10.1104/pp.109.148270
You have accessRestricted Access
A Sugar-Inducible Protein Kinase, VvSK1, Regulates Hexose Transport and Sugar Accumulation in Grapevine Cells
Fatma Lecourieux, David Lecourieux, Céline Vignault, Serge Delrot

Plant Physiol. Feb 2010, 152 (2) 1096-1106; DOI: https://doi.org/10.1104/pp.109.149138

Main menu

User menu

Search

Table of Contents

EDITORIALS - FOCUS ISSUE

UPDATES - FOCUS ISSUE

BREAKTHROUGH TECHNOLOGIES - FOCUS ISSUE

BIOINFORMATICS - FOCUS ISSUE

Research Articles

ON THE INSIDE

BREAKTHROUGH TECHNOLOGIES

SCIENTIFIC CORRESPONDENCE

BIOCHEMICAL PROCESSES AND MACROMOLECULAR STRUCTURES

BIOENERGETICS AND PHOTOSYNTHESIS

CELL BIOLOGY AND SIGNAL TRANSDUCTION

DEVELOPMENT AND HORMONE ACTION

ENVIRONMENTAL STRESS AND ADAPTATION TO STRESS

GENETICS, GENOMICS, AND MOLECULAR EVOLUTION

PLANTS INTERACTING WITH OTHER ORGANISMS

WHOLE PLANT AND ECOPHYSIOLOGY

SYSTEMS BIOLOGY, MOLECULAR BIOLOGY, AND GENE REGULATION

In this issue

Jump to

Our Content

For Authors

For Reviewers

Other Services