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Table of Contents

Plant Physiology: 152 (2)
Feb 2010

EDITORIALS - FOCUS ISSUE

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    Plant Systems Biology
    Jacques Joyard, Sheila McCormick
    Plant Physiol. Feb 2010, 152 (2) 401; DOI: https://doi.org/10.1104/pp.110.900314

UPDATES - FOCUS ISSUE

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    Gene Expression Analysis, Proteomics, and Network Discovery
    Sacha Baginsky, Lars Hennig, Philip Zimmermann, Wilhelm Gruissem
    Plant Physiol. Feb 2010, 152 (2) 402-410; DOI: https://doi.org/10.1104/pp.109.150433
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    Systems Biology Update: Cell Type-Specific Transcriptional Regulatory Networks
    Li Pu, Siobhan Brady
    Plant Physiol. Feb 2010, 152 (2) 411-419; DOI: https://doi.org/10.1104/pp.109.148668
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    Systems Biology of Organ Initiation at the Shoot Apex
    Jan Traas, Françoise Monéger
    Plant Physiol. Feb 2010, 152 (2) 420-427; DOI: https://doi.org/10.1104/pp.109.150409
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    Metabolic Networks: How to Identify Key Components in the Regulation of Metabolism and Growth
    Mark Stitt, Ronan Sulpice, Joost Keurentjes
    Plant Physiol. Feb 2010, 152 (2) 428-444; DOI: https://doi.org/10.1104/pp.109.150821
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    A Systems View of Responses to Nutritional Cues in Arabidopsis: Toward a Paradigm Shift for Predictive Network Modeling
    Sandrine Ruffel, Gabriel Krouk, Gloria M. Coruzzi
    Plant Physiol. Feb 2010, 152 (2) 445-452; DOI: https://doi.org/10.1104/pp.109.148502
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    Signaling between Chloroplasts and the Nucleus: Can a Systems Biology Approach Bring Clarity to a Complex and Highly Regulated Pathway?
    Hou-Sung Jung, Joanne Chory
    Plant Physiol. Feb 2010, 152 (2) 453-459; DOI: https://doi.org/10.1104/pp.109.149070
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    Bioinformatic and Systems Biology Tools to Generate Testable Models of Signaling Pathways and Their Targets
    Andrea Pitzschke, Heribert Hirt
    Plant Physiol. Feb 2010, 152 (2) 460-469; DOI: https://doi.org/10.1104/pp.109.149583
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    Hope for Humpty Dumpty: Systems Biology of Cellular Signaling
    Sarah M. Assmann
    Plant Physiol. Feb 2010, 152 (2) 470-479; DOI: https://doi.org/10.1104/pp.109.151266
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    Systems Biology Uncovers the Foundation of Natural Genetic Diversity
    Daniel J. Kliebenstein
    Plant Physiol. Feb 2010, 152 (2) 480-486; DOI: https://doi.org/10.1104/pp.109.149328

BREAKTHROUGH TECHNOLOGIES - FOCUS ISSUE

  • Open Access
    AGRONOMICS1: A New Resource for Arabidopsis Transcriptome Profiling
    Hubert Rehrauer, Catharine Aquino, Wilhelm Gruissem, Stefan R. Henz, Pierre Hilson, Sascha Laubinger, Naira Naouar, Andrea Patrignani, Stephane Rombauts, Huan Shu, Yves Van de Peer, Marnik Vuylsteke, Detlef Weigel, Georg Zeller, Lars Hennig
    Plant Physiol. Feb 2010, 152 (2) 487-499; DOI: https://doi.org/10.1104/pp.109.150185

BIOINFORMATICS - FOCUS ISSUE

  • Open Access
    VirtualPlant: A Software Platform to Support Systems Biology Research
    Manpreet S. Katari, Steve D. Nowicki, Felipe F. Aceituno, Damion Nero, Jonathan Kelfer, Lee Parnell Thompson, Juan M. Cabello, Rebecca S. Davidson, Arthur P. Goldberg, Dennis E. Shasha, Gloria M. Coruzzi, Rodrigo A. Gutiérrez
    Plant Physiol. Feb 2010, 152 (2) 500-515; DOI: https://doi.org/10.1104/pp.109.147025

Research Articles

  • Open Access
    Epigenetic Regulation of Gene Programs by EMF1 and EMF2 in Arabidopsis
    Sang Yeol Kim, T. Zhu, Z. Renee Sung
    Plant Physiol. Feb 2010, 152 (2) 516-528; DOI: https://doi.org/10.1104/pp.109.143495
  • Open Access
    Large-Scale Reverse Genetics in Arabidopsis: Case Studies from the Chloroplast 2010 Project
    Imad Ajjawi, Yan Lu, Linda J. Savage, Shannon M. Bell, Robert L. Last
    Plant Physiol. Feb 2010, 152 (2) 529-540; DOI: https://doi.org/10.1104/pp.109.148494
  • Open Access
    Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
    Marc Libault, Andrew Farmer, Laurent Brechenmacher, Jenny Drnevich, Raymond J. Langley, Damla D. Bilgin, Osman Radwan, David J. Neece, Steven J. Clough, Gregory D. May, Gary Stacey
    Plant Physiol. Feb 2010, 152 (2) 541-552; DOI: https://doi.org/10.1104/pp.109.148379
  • Open Access
    Systematic Localization of the Arabidopsis Core Cell Cycle Proteins Reveals Novel Cell Division Complexes
    Joanna Boruc, Evelien Mylle, Maria Duda, Rebecca De Clercq, Stephane Rombauts, Danny Geelen, Pierre Hilson, Dirk Inzé, Daniel Van Damme, Eugenia Russinova
    Plant Physiol. Feb 2010, 152 (2) 553-565; DOI: https://doi.org/10.1104/pp.109.148643
  • Open Access
    AtMetExpress Development: A Phytochemical Atlas of Arabidopsis Development
    Fumio Matsuda, Masami Y. Hirai, Eriko Sasaki, Kenji Akiyama, Keiko Yonekura-Sakakibara, Nicholas J. Provart, Tetsuya Sakurai, Yukihisa Shimada, Kazuki Saito
    Plant Physiol. Feb 2010, 152 (2) 566-578; DOI: https://doi.org/10.1104/pp.109.148031
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    AraGEM, a Genome-Scale Reconstruction of the Primary Metabolic Network in Arabidopsis
    Cristiana Gomes de Oliveira Dal'Molin, Lake-Ee Quek, Robin William Palfreyman, Stevens Michael Brumbley, Lars Keld Nielsen
    Plant Physiol. Feb 2010, 152 (2) 579-589; DOI: https://doi.org/10.1104/pp.109.148817
  • Open Access
    A Systems Model of Vesicle Trafficking in Arabidopsis Pollen Tubes
    Naohiro Kato, Hongyu He, Alexander P. Steger
    Plant Physiol. Feb 2010, 152 (2) 590-601; DOI: https://doi.org/10.1104/pp.109.148700
  • Open Access
    Subcellular Flux Analysis of Central Metabolism in a Heterotrophic Arabidopsis Cell Suspension Using Steady-State Stable Isotope Labeling
    Shyam K. Masakapalli, Pascaline Le Lay, Joanna E. Huddleston, Naomi L. Pollock, Nicholas J. Kruger, R. George Ratcliffe
    Plant Physiol. Feb 2010, 152 (2) 602-619; DOI: https://doi.org/10.1104/pp.109.151316

ON THE INSIDE

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    On the Inside
    Peter V. Minorsky
    Plant Physiol. Feb 2010, 152 (2) 620-621; DOI: https://doi.org/10.1104/pp.110.900315

BREAKTHROUGH TECHNOLOGIES

  • Open Access
    Hydrophobin Fusions for High-Level Transient Protein Expression and Purification in Nicotiana benthamiana
    Jussi J. Joensuu, Andrew J. Conley, Michael Lienemann, Jim E. Brandle, Markus B. Linder, Rima Menassa
    Plant Physiol. Feb 2010, 152 (2) 622-633; DOI: https://doi.org/10.1104/pp.109.149021

SCIENTIFIC CORRESPONDENCE

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    Phosphoenolpyruvate Carboxylase from C4 Leaves Is Selectively Targeted for Inhibition by Anionic Phospholipids
    José A. Monreal, Fionn McLoughlin, Cristina Echevarría, Sofía García-Mauriño, Christa Testerink
    Plant Physiol. Feb 2010, 152 (2) 634-638; DOI: https://doi.org/10.1104/pp.109.150326

BIOCHEMICAL PROCESSES AND MACROMOLECULAR STRUCTURES

  • Open Access
    A Bifunctional Geranyl and Geranylgeranyl Diphosphate Synthase Is Involved in Terpene Oleoresin Formation in Picea abies
    Axel Schmidt, Betty Wächtler, Ulrike Temp, Trygve Krekling, Armand Séguin, Jonathan Gershenzon
    Plant Physiol. Feb 2010, 152 (2) 639-655; DOI: https://doi.org/10.1104/pp.109.144691
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    An O-Acetylserine(thiol)lyase Homolog with l-Cysteine Desulfhydrase Activity Regulates Cysteine Homeostasis in Arabidopsis
    Consolación Álvarez, Leticia Calo, Luis C. Romero, Irene García, Cecilia Gotor
    Plant Physiol. Feb 2010, 152 (2) 656-669; DOI: https://doi.org/10.1104/pp.109.147975
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    Expression of Rapeseed Microsomal Lysophosphatidic Acid Acyltransferase Isozymes Enhances Seed Oil Content in Arabidopsis
    Sylvie Maisonneuve, Jean-Jacques Bessoule, René Lessire, Michel Delseny, Thomas J. Roscoe
    Plant Physiol. Feb 2010, 152 (2) 670-684; DOI: https://doi.org/10.1104/pp.109.148247
  • Open Access
    A Putative Phosphatase, LSF1, Is Required for Normal Starch Turnover in Arabidopsis Leaves
    Sylviane Comparot-Moss, Oliver Kötting, Michaela Stettler, Christoph Edner, Alexander Graf, Sean E. Weise, Sebastian Streb, Wei-Ling Lue, Daniel MacLean, Sebastian Mahlow, Gerhard Ritte, Martin Steup, Jychian Chen, Samuel C. Zeeman, Alison M. Smith
    Plant Physiol. Feb 2010, 152 (2) 685-697; DOI: https://doi.org/10.1104/pp.109.148981
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    Increasing Sucrose Uptake Capacity of Wheat Grains Stimulates Storage Protein Synthesis
    Nicola Weichert, Isolde Saalbach, Heiko Weichert, Stefan Kohl, Alexander Erban, Joachim Kopka, Bettina Hause, Alok Varshney, Nese Sreenivasulu, Marc Strickert, Jochen Kumlehn, Winfriede Weschke, Hans Weber
    Plant Physiol. Feb 2010, 152 (2) 698-710; DOI: https://doi.org/10.1104/pp.109.150854
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    The Laforin-Like Dual-Specificity Phosphatase SEX4 from Arabidopsis Hydrolyzes Both C6- and C3-Phosphate Esters Introduced by Starch-Related Dikinases and Thereby Affects Phase Transition of α-Glucans
    Mahdi Hejazi, Joerg Fettke, Oliver Kötting, Samuel C. Zeeman, Martin Steup
    Plant Physiol. Feb 2010, 152 (2) 711-722; DOI: https://doi.org/10.1104/pp.109.149914
  • Open Access
    Studies of the Kinetic Mechanism of Maize Endosperm ADP-Glucose Pyrophosphorylase Uncovered Complex Regulatory Properties
    Susan K. Boehlein, Janine R. Shaw, Jon D. Stewart, L. Curtis Hannah
    Plant Physiol. Feb 2010, 152 (2) 1056-1064; DOI: https://doi.org/10.1104/pp.109.149450

BIOENERGETICS AND PHOTOSYNTHESIS

  • Open Access
    Thylakoid Protein Phosphorylation in Higher Plant Chloroplasts Optimizes Electron Transfer under Fluctuating Light
    Mikko Tikkanen, Michele Grieco, Saijaliisa Kangasjärvi, Eva-Mari Aro
    Plant Physiol. Feb 2010, 152 (2) 723-735; DOI: https://doi.org/10.1104/pp.109.150250
  • Open Access
    Oscillatory Growth in Lily Pollen Tubes Does Not Require Aerobic Energy Metabolism
    Caleb M. Rounds, Peter K. Hepler, Sasha J. Fuller, Lawrence J. Winship
    Plant Physiol. Feb 2010, 152 (2) 736-746; DOI: https://doi.org/10.1104/pp.109.150896
  • Open Access
    Divalent Metal Ions in Plant Mitochondria and Their Role in Interactions with Proteins and Oxidative Stress-Induced Damage to Respiratory Function
    Yew-Foon Tan, Nicholas O'Toole, Nicolas L. Taylor, A. Harvey Millar
    Plant Physiol. Feb 2010, 152 (2) 747-761; DOI: https://doi.org/10.1104/pp.109.147942
  • Open Access
    Stimulation of Nonselective Amino Acid Export by Glutamine Dumper Proteins
    Réjane Pratelli, Lars M. Voll, Robin J. Horst, Wolf B. Frommer, Guillaume Pilot
    Plant Physiol. Feb 2010, 152 (2) 762-773; DOI: https://doi.org/10.1104/pp.109.151746

CELL BIOLOGY AND SIGNAL TRANSDUCTION

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    WallGen, Software to Construct Layered Cellulose-Hemicellulose Networks and Predict Their Small Deformation Mechanics
    Hung Kha, Sigrid C. Tuble, Shankar Kalyanasundaram, Richard E. Williamson
    Plant Physiol. Feb 2010, 152 (2) 774-786; DOI: https://doi.org/10.1104/pp.109.146936
  • Open Access
    Real-Time Imaging of Cellulose Reorientation during Cell Wall Expansion in Arabidopsis Roots
    Charles T. Anderson, Andrew Carroll, Laila Akhmetova, Chris Somerville
    Plant Physiol. Feb 2010, 152 (2) 787-796; DOI: https://doi.org/10.1104/pp.109.150128
  • Open Access
    Flexibility contra Stiffness: The Phragmoplast as a Physical Barrier for Beads But Not for Vesicles
    Agnieszka Esseling-Ozdoba, Richard A. Kik, André A.M. van Lammeren, J. Mieke Kleijn, Anne Mie C. Emons
    Plant Physiol. Feb 2010, 152 (2) 1065-1072; DOI: https://doi.org/10.1104/pp.109.150417
  • Open Access
    Apyrase (Nucleoside Triphosphate-Diphosphohydrolase) and Extracellular Nucleotides Regulate Cotton Fiber Elongation in Cultured Ovules
    Greg Clark, Jonathan Torres, Scott Finlayson, Xueying Guan, Craig Handley, Jinsuk Lee, Julia E. Kays, Z. Jeffery Chen, Stanley J. Roux
    Plant Physiol. Feb 2010, 152 (2) 1073-1083; DOI: https://doi.org/10.1104/pp.109.147637

DEVELOPMENT AND HORMONE ACTION

  • Open Access
    The REDUCED LEAFLET Genes Encode Key Components of the trans-Acting Small Interfering RNA Pathway and Regulate Compound Leaf and Flower Development in Lotus japonicus
    Jun Yan, Xuefei Cai, Jianghong Luo, Shusei Sato, Qunyi Jiang, Jun Yang, Xiangling Cao, Xiaohe Hu, Satoshi Tabata, Peter M. Gresshoff, Da Luo
    Plant Physiol. Feb 2010, 152 (2) 797-807; DOI: https://doi.org/10.1104/pp.109.140947
  • Open Access
    The Role of Casein Kinase II in Flowering Time Regulation Has Diversified during Evolution
    Eri Ogiso, Yuji Takahashi, Takuji Sasaki, Masahiro Yano, Takeshi Izawa
    Plant Physiol. Feb 2010, 152 (2) 808-820; DOI: https://doi.org/10.1104/pp.109.148908
  • Open Access
    SEUSS and SEUSS-LIKE Transcriptional Adaptors Regulate Floral and Embryonic Development in Arabidopsis
    Fang Bao, Sridevi Azhakanandam, Robert G. Franks
    Plant Physiol. Feb 2010, 152 (2) 821-836; DOI: https://doi.org/10.1104/pp.109.146183
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    Characterization of the Possible Roles for B Class MADS Box Genes in Regulation of Perianth Formation in Orchid
    Yu-Yun Chang, Nai-Hsuan Kao, Jen-Ying Li, Wei-Han Hsu, Yu-Ling Liang, Jia-Wei Wu, Chang-Hsien Yang
    Plant Physiol. Feb 2010, 152 (2) 837-853; DOI: https://doi.org/10.1104/pp.109.147116

ENVIRONMENTAL STRESS AND ADAPTATION TO STRESS

  • Open Access
    Biochemical and Molecular Characterization of PvPAP3, a Novel Purple Acid Phosphatase Isolated from Common Bean Enhancing Extracellular ATP Utilization
    Cuiyue Liang, Jiang Tian, Hon-Ming Lam, Boon Leong Lim, Xiaolong Yan, Hong Liao
    Plant Physiol. Feb 2010, 152 (2) 854-865; DOI: https://doi.org/10.1104/pp.109.147918
  • Open Access
    Arabidopsis Deadenylases AtCAF1a and AtCAF1b Play Overlapping and Distinct Roles in Mediating Environmental Stress Responses
    Justin W. Walley, Dior R. Kelley, Gergana Nestorova, David L. Hirschberg, Katayoon Dehesh
    Plant Physiol. Feb 2010, 152 (2) 866-875; DOI: https://doi.org/10.1104/pp.109.149005
  • Open Access
    A Raf-Like MAPKKK Gene DSM1 Mediates Drought Resistance through Reactive Oxygen Species Scavenging in Rice
    Jing Ning, Xianghua Li, Leslie M. Hicks, Lizhong Xiong
    Plant Physiol. Feb 2010, 152 (2) 876-890; DOI: https://doi.org/10.1104/pp.109.149856
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    Enhanced Abscisic Acid-Mediated Responses in nia1nia2noa1-2 Triple Mutant Impaired in NIA/NR- and AtNOA1-Dependent Nitric Oxide Biosynthesis in Arabidopsis
    Jorge Lozano-Juste, José León
    Plant Physiol. Feb 2010, 152 (2) 891-903; DOI: https://doi.org/10.1104/pp.109.148023
  • Open Access
    Chitinase-Like Protein CTL1 Plays a Role in Altering Root System Architecture in Response to Multiple Environmental Conditions
    Christian Hermans, Silvana Porco, Nathalie Verbruggen, Daniel R. Bush
    Plant Physiol. Feb 2010, 152 (2) 904-917; DOI: https://doi.org/10.1104/pp.109.149849
  • Open Access
    Gravity-Induced Modifications to Development in Hypocotyls of Arabidopsis Tubulin Mutants
    Shouhei Matsumoto, Saori Kumasaki, Kouichi Soga, Kazuyuki Wakabayashi, Takashi Hashimoto, Takayuki Hoson
    Plant Physiol. Feb 2010, 152 (2) 918-926; DOI: https://doi.org/10.1104/pp.109.147330

GENETICS, GENOMICS, AND MOLECULAR EVOLUTION

  • Open Access
    Aneuploidy Causes Tissue-Specific Qualitative Changes in Global Gene Expression Patterns in Maize
    Irina Makarevitch, Carolyn Harris
    Plant Physiol. Feb 2010, 152 (2) 927-938; DOI: https://doi.org/10.1104/pp.109.150466
  • Open Access
    MEF9, an E-Subclass Pentatricopeptide Repeat Protein, Is Required for an RNA Editing Event in the nad7 Transcript in Mitochondria of Arabidopsis
    Mizuki Takenaka
    Plant Physiol. Feb 2010, 152 (2) 939-947; DOI: https://doi.org/10.1104/pp.109.151175

PLANTS INTERACTING WITH OTHER ORGANISMS

  • Open Access
    The Pepper 9-Lipoxygenase Gene CaLOX1 Functions in Defense and Cell Death Responses to Microbial Pathogens
    In Sun Hwang, Byung Kook Hwang
    Plant Physiol. Feb 2010, 152 (2) 948-967; DOI: https://doi.org/10.1104/pp.109.147827
  • Open Access
    Arabidopsis Spermidine Synthase Is Targeted by an Effector Protein of the Cyst Nematode Heterodera schachtii
    Tarek Hewezi, Peter J. Howe, Tom R. Maier, Richard S. Hussey, Melissa G. Mitchum, Eric L. Davis, Thomas J. Baum
    Plant Physiol. Feb 2010, 152 (2) 968-984; DOI: https://doi.org/10.1104/pp.109.150557
  • Open Access
    Reactive Oxygen Species Are Involved in Plant Defense against a Gall Midge
    Xuming Liu, Christie E. Williams, Jill A. Nemacheck, Haiyan Wang, Subhashree Subramanyam, Cheng Zheng, Ming-Shun Chen
    Plant Physiol. Feb 2010, 152 (2) 985-999; DOI: https://doi.org/10.1104/pp.109.150656
  • You have accessRestricted Access
    Knockdown of the Symbiotic Sucrose Synthase MtSucS1 Affects Arbuscule Maturation and Maintenance in Mycorrhizal Roots of Medicago truncatula
    Markus Christian Baier, Matthias Keck, Victoria Gödde, Karsten Niehaus, Helge Küster, Natalija Hohnjec
    Plant Physiol. Feb 2010, 152 (2) 1000-1014; DOI: https://doi.org/10.1104/pp.109.149898
  • Open Access
    Novel Bifunctional Nucleases, OmBBD and AtBBD1, Are Involved in Abscisic Acid-Mediated Callose Deposition in Arabidopsis
    Min Kyoung You, Hyun Young Shin, Young Jin Kim, Sung Han Ok, Sung Ki Cho, Ji Ung Jeung, Sang Dong Yoo, Jeong Kook Kim, Jeong Sheop Shin
    Plant Physiol. Feb 2010, 152 (2) 1015-1029; DOI: https://doi.org/10.1104/pp.109.147645
  • Open Access
    Jasmonate-Dependent and -Independent Pathways Mediate Specific Effects of Solar Ultraviolet B Radiation on Leaf Phenolics and Antiherbivore Defense
    Patricia V. Demkura, Guillermina Abdala, Ian T. Baldwin, Carlos L. Ballaré
    Plant Physiol. Feb 2010, 152 (2) 1084-1095; DOI: https://doi.org/10.1104/pp.109.148999

WHOLE PLANT AND ECOPHYSIOLOGY

  • Open Access
    Tracing Cationic Nutrients from Xylem into Stem Tissue of French Bean by Stable Isotope Tracers and Cryo-Secondary Ion Mass Spectrometry
    Ralf Metzner, Heike Ursula Schneider, Uwe Breuer, Michael Robert Thorpe, Ulrich Schurr, Walter Heinz Schroeder
    Plant Physiol. Feb 2010, 152 (2) 1030-1043; DOI: https://doi.org/10.1104/pp.109.143776

SYSTEMS BIOLOGY, MOLECULAR BIOLOGY, AND GENE REGULATION

  • Open Access
    Functional Characterization of Poplar Wood-Associated NAC Domain Transcription Factors
    Ruiqin Zhong, Chanhui Lee, Zheng-Hua Ye
    Plant Physiol. Feb 2010, 152 (2) 1044-1055; DOI: https://doi.org/10.1104/pp.109.148270
  • You have accessRestricted Access
    A Sugar-Inducible Protein Kinase, VvSK1, Regulates Hexose Transport and Sugar Accumulation in Grapevine Cells
    Fatma Lecourieux, David Lecourieux, Céline Vignault, Serge Delrot
    Plant Physiol. Feb 2010, 152 (2) 1096-1106; DOI: https://doi.org/10.1104/pp.109.149138
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Plant Physiology: 152 (2)
Plant Physiology
Vol. 152, Issue 2
February 2010
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  • ON THE INSIDE
  • BREAKTHROUGH TECHNOLOGIES
  • SCIENTIFIC CORRESPONDENCE
  • BIOCHEMICAL PROCESSES AND MACROMOLECULAR STRUCTURES
  • BIOENERGETICS AND PHOTOSYNTHESIS
  • CELL BIOLOGY AND SIGNAL TRANSDUCTION
  • DEVELOPMENT AND HORMONE ACTION
  • ENVIRONMENTAL STRESS AND ADAPTATION TO STRESS
  • GENETICS, GENOMICS, AND MOLECULAR EVOLUTION
  • PLANTS INTERACTING WITH OTHER ORGANISMS
  • WHOLE PLANT AND ECOPHYSIOLOGY
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