Plant Physiology: 160 (2)

Oct 2012

ON THE INSIDE

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On the Inside
Peter V. Minorsky

Plant Physiol. Oct 2012, 160 (2) 569-570; DOI: https://doi.org/10.1104/pp.112.900445

UPDATES

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Plastid Proteostasis and Heterologous Protein Accumulation in Transplastomic Plants
Francesca De Marchis, Andrea Pompa, Michele Bellucci

Plant Physiol. Oct 2012, 160 (2) 571-581; DOI: https://doi.org/10.1104/pp.112.203778
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Barley Stripe Mosaic Virus-Mediated Tools for Investigating Gene Function in Cereal Plants and Their Pathogens: Virus-Induced Gene Silencing, Host-Mediated Gene Silencing, and Virus-Mediated Overexpression of Heterologous Protein
Wing-Sham Lee, Kim E. Hammond-Kosack, Kostya Kanyuka

Plant Physiol. Oct 2012, 160 (2) 582-590; DOI: https://doi.org/10.1104/pp.112.203489

BREAKTHROUGH TECHNOLOGIES

Open Access
Fast Isogenic Mapping-by-Sequencing of Ethyl Methanesulfonate-Induced Mutant Bulks
Benjamin Hartwig, Geo Velikkakam James, Kathryn Konrad, Korbinian Schneeberger, Franziska Turck

Plant Physiol. Oct 2012, 160 (2) 591-600; DOI: https://doi.org/10.1104/pp.112.200311
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RNA Silencing Induced by an Artificial Sequence That Prevents Proper Transcription Termination in Rice
Taiji Kawakatsu, Yuhya Wakasa, Hiroshi Yasuda, Fumio Takaiwa

Plant Physiol. Oct 2012, 160 (2) 601-612; DOI: https://doi.org/10.1104/pp.112.202689

BIOINFORMATICS

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Systematic Prediction of cis-Regulatory Elements in the Chlamydomonas reinhardtii Genome Using Comparative Genomics
Jun Ding, Xiaoman Li, Haiyan Hu

Plant Physiol. Oct 2012, 160 (2) 613-623; DOI: https://doi.org/10.1104/pp.112.200840

BIOCHEMICAL PROCESSES AND MACROMOLECULAR STRUCTURES

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Plasma Membrane Localization of Solanum tuberosum Remorin from Group 1, Homolog 3 Is Mediated by Conformational Changes in a Novel C-Terminal Anchor and Required for the Restriction of Potato Virus X Movement^]
Artemis Perraki, Jean-Luc Cacas, Jean-Marc Crowet, Laurence Lins, Michel Castroviejo, Sylvie German-Retana, Sébastien Mongrand, Sylvain Raffaele

Plant Physiol. Oct 2012, 160 (2) 624-637; DOI: https://doi.org/10.1104/pp.112.200519
Open Access
A Land-Plant-Specific Glycerol-3-Phosphate Acyltransferase Family in Arabidopsis: Substrate Specificity, sn-2 Preference, and Evolution
Weili Yang, Jeffrey P. Simpson, Yonghua Li-Beisson, Fred Beisson, Mike Pollard, John B. Ohlrogge

Plant Physiol. Oct 2012, 160 (2) 638-652; DOI: https://doi.org/10.1104/pp.112.201996
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Structural Characterization of Arabidopsis Leaf Arabinogalactan Polysaccharides
Theodora Tryfona, Hui-Chung Liang, Toshihisa Kotake, Yoichi Tsumuraya, Elaine Stephens, Paul Dupree

Plant Physiol. Oct 2012, 160 (2) 653-666; DOI: https://doi.org/10.1104/pp.112.202309
Open Access
A Bifunctional Enzyme That Has Both Monoacylglycerol Acyltransferase and Acyl Hydrolase Activities
Panneerselvam Vijayaraj, Charnitkaur B. Jashal, Anitha Vijayakumar, Sapa Hima Rani, D.K. Venkata Rao, Ram Rajasekharan

Plant Physiol. Oct 2012, 160 (2) 667-683; DOI: https://doi.org/10.1104/pp.112.202135

BIOENERGETICS AND PHOTOSYNTHESIS

Open Access
Antisense Reduction of NADP-Malic Enzyme in Flaveria bidentis Reduces Flow of CO₂ through the C₄ Cycle
Jasper J.L. Pengelly, Jackie Tan, Robert T. Furbank, Susanne von Caemmerer

Plant Physiol. Oct 2012, 160 (2) 1070-1080; DOI: https://doi.org/10.1104/pp.112.203240

CELL BIOLOGY AND SIGNAL TRANSDUCTION

Open Access
A Chimeric Arabinogalactan Protein Promotes Somatic Embryogenesis in Cotton Cell Culture
Simon Poon, Robyn Louise Heath, Adrienne Elizabeth Clarke

Plant Physiol. Oct 2012, 160 (2) 684-695; DOI: https://doi.org/10.1104/pp.112.203075
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The Rice Wall-Associated Receptor-Like Kinase Gene OsDEES1 Plays a Role in Female Gametophyte Development
Na Wang, Hui-Jia Huang, Su-Ting Ren, Jiao-Jiao Li, Ying Sun, Da-Ye Sun, Su-Qiao Zhang

Plant Physiol. Oct 2012, 160 (2) 696-707; DOI: https://doi.org/10.1104/pp.112.203943
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Proteomic Analysis of Chloroplast-to-Chromoplast Transition in Tomato Reveals Metabolic Shifts Coupled with Disrupted Thylakoid Biogenesis Machinery and Elevated Energy-Production Components
Cristina Barsan, Mohamed Zouine, Elie Maza, Wanping Bian, Isabel Egea, Michel Rossignol, David Bouyssie, Carole Pichereaux, Eduardo Purgatto, Mondher Bouzayen, Alain Latché, Jean-Claude Pech

Plant Physiol. Oct 2012, 160 (2) 708-725; DOI: https://doi.org/10.1104/pp.112.203679
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Complexes with Mixed Primary and Secondary Cellulose Synthases Are Functional in Arabidopsis Plants
Andrew Carroll, Nasim Mansoori, Shundai Li, Lei Lei, Samantha Vernhettes, Richard G.F. Visser, Chris Somerville, Ying Gu, Luisa M. Trindade

Plant Physiol. Oct 2012, 160 (2) 726-737; DOI: https://doi.org/10.1104/pp.112.199208

DEVELOPMENT AND HORMONE ACTION

Open Access
Dissecting Functions of KATANIN and WRINKLED1 in Cotton Fiber Development by Virus-Induced Gene Silencing
Jing Qu, Jian Ye, Yun-Feng Geng, Yan-Wei Sun, Shi-Qiang Gao, Bi-Pei Zhang, Wen Chen, Nam-Hai Chua

Plant Physiol. Oct 2012, 160 (2) 738-748; DOI: https://doi.org/10.1104/pp.112.198564
Open Access
Auxin and Epigenetic Regulation of SKP2B, an F-Box That Represses Lateral Root Formation
Concepción Manzano, Elena Ramirez-Parra, Ilda Casimiro, Sofía Otero, Bénédicte Desvoyes, Bert De Rybel, Tom Beeckman, Pedro Casero, Crisanto Gutierrez, Juan C. del Pozo

Plant Physiol. Oct 2012, 160 (2) 749-762; DOI: https://doi.org/10.1104/pp.112.198341
Open Access
PIN Auxin Efflux Carriers Are Necessary for Pulse-Induced But Not Continuous Light-Induced Phototropism in Arabidopsis
Ken Haga, Tatsuya Sakai

Plant Physiol. Oct 2012, 160 (2) 763-776; DOI: https://doi.org/10.1104/pp.112.202432
Open Access
New Insights into Roles of Cell Wall Invertase in Early Seed Development Revealed by Comprehensive Spatial and Temporal Expression Patterns of GhCWIN1 in Cotton
Lu Wang, Yong-Ling Ruan

Plant Physiol. Oct 2012, 160 (2) 777-787; DOI: https://doi.org/10.1104/pp.112.203893
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CHIMERIC FLORAL ORGANS1, Encoding a Monocot-Specific MADS Box Protein, Regulates Floral Organ Identity in Rice
Xianchun Sang, Yunfeng Li, Zengke Luo, Deyong Ren, Likui Fang, Nan Wang, Fangming Zhao, Yinghua Ling, Zhenglin Yang, Yongsheng Liu, Guanghua He

Plant Physiol. Oct 2012, 160 (2) 788-807; DOI: https://doi.org/10.1104/pp.112.200980
Open Access
Two Novel RING-Type Ubiquitin Ligases, RGLG3 and RGLG4, Are Essential for Jasmonate-Mediated Responses in Arabidopsis
Xu Zhang, Qian Wu, Jiao Ren, Wanqiang Qian, Shanping He, Kuowei Huang, XiangChun Yu, Yin Gao, Ping Huang, Chengcai An

Plant Physiol. Oct 2012, 160 (2) 808-822; DOI: https://doi.org/10.1104/pp.112.203422
Open Access
LONO1 Encoding a Nucleoporin Is Required for Embryogenesis and Seed Viability in Arabidopsis
Christopher Braud, Wenguang Zheng, Wenyan Xiao

Plant Physiol. Oct 2012, 160 (2) 823-836; DOI: https://doi.org/10.1104/pp.112.202192
Open Access
Characterization of the Fungal Gibberellin Desaturase as a 2-Oxoglutarate-Dependent Dioxygenase and Its Utilization for Enhancing Plant Growth
Anjanabha Bhattacharya, Sofia Kourmpetli, Dennis A. Ward, Stephen G. Thomas, Fan Gong, Stephen J. Powers, Esther Carrera, Benjamin Taylor, Francisco Nuñez de Caceres Gonzalez, Bettina Tudzynski, Andrew L. Phillips, Michael R. Davey, Peter Hedden

Plant Physiol. Oct 2012, 160 (2) 837-845; DOI: https://doi.org/10.1104/pp.112.201756

ENVIRONMENTAL STRESS AND ADAPTATION TO STRESS

Open Access
Effects of Drought on Gene Expression in Maize Reproductive and Leaf Meristem Tissue Revealed by RNA-Seq
Akshay Kakumanu, Madana M.R. Ambavaram, Curtis Klumas, Arjun Krishnan, Utlwang Batlang, Elijah Myers, Ruth Grene, Andy Pereira

Plant Physiol. Oct 2012, 160 (2) 846-867; DOI: https://doi.org/10.1104/pp.112.200444
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SNF1-Related Protein Kinases Type 2 Are Involved in Plant Responses to Cadmium Stress
Anna Kulik, Anna Anielska-Mazur, Maria Bucholc, Emmanuel Koen, Katarzyna Szymańska, Agnieszka Żmieńko, Ewa Krzywińska, Izabela Wawer, Fionn McLoughlin, Dariusz Ruszkowski, Marek Figlerowicz, Christa Testerink, Aleksandra Skłodowska, David Wendehenne, Grażyna Dobrowolska

Plant Physiol. Oct 2012, 160 (2) 868-883; DOI: https://doi.org/10.1104/pp.112.194472

GENETICS, GENOMICS, AND MOLECULAR EVOLUTION

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Expansive Evolution of the TREHALOSE-6-PHOSPHATE PHOSPHATASE Gene Family in Arabidopsis
Lies Vandesteene, Lorena López-Galvis, Kevin Vanneste, Regina Feil, Steven Maere, Willem Lammens, Filip Rolland, John E. Lunn, Nelson Avonce, Tom Beeckman, Patrick Van Dijck

Plant Physiol. Oct 2012, 160 (2) 884-896; DOI: https://doi.org/10.1104/pp.112.201400

PLANTS INTERACTING WITH OTHER ORGANISMS

Open Access
The SNARE Protein SYP71 Expressed in Vascular Tissues Is Involved in Symbiotic Nitrogen Fixation in Lotus japonicus Nodules
Tsuneo Hakoyama, Ryo Oi, Kazuya Hazuma, Eri Suga, Yuka Adachi, Mayumi Kobayashi, Rie Akai, Shusei Sato, Eigo Fukai, Satoshi Tabata, Satoshi Shibata, Guo-Jiang Wu, Yoshihiro Hase, Atsushi Tanaka, Masayoshi Kawaguchi, Hiroshi Kouchi, Yosuke Umehara, Norio Suganuma

Plant Physiol. Oct 2012, 160 (2) 897-905; DOI: https://doi.org/10.1104/pp.112.200782
Open Access
Functional Assessment of the Medicago truncatula NIP/LATD Protein Demonstrates That It Is a High-Affinity Nitrate Transporter
Rammyani Bagchi, Mohammad Salehin, O. Sarah Adeyemo, Carolina Salazar, Vladimir Shulaev, D. Janine Sherrier, Rebecca Dickstein

Plant Physiol. Oct 2012, 160 (2) 906-916; DOI: https://doi.org/10.1104/pp.112.196444
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Lotus japonicus ARPC1 Is Required for Rhizobial Infection
Md Shakhawat Hossain, Jinqiu Liao, Euan K. James, Shusei Sato, Satoshi Tabata, Anna Jurkiewicz, Lene H. Madsen, Jens Stougaard, Loretta Ross, Krzysztof Szczyglowski

Plant Physiol. Oct 2012, 160 (2) 917-928; DOI: https://doi.org/10.1104/pp.112.202572
Open Access
HSPRO Controls Early Nicotiana attenuata Seedling Growth during Interaction with the Fungus Piriformospora indica
Stefan Schuck, Iris Camehl, Paola A. Gilardoni, Ralf Oelmueller, Ian T. Baldwin, Gustavo Bonaventure

Plant Physiol. Oct 2012, 160 (2) 929-943; DOI: https://doi.org/10.1104/pp.112.203976
Open Access
The Effector SPRYSEC-19 of Globodera rostochiensis Suppresses CC-NB-LRR-Mediated Disease Resistance in Plants
Wiebe J. Postma, Erik J. Slootweg, Sajid Rehman, Anna Finkers-Tomczak, Tom O.G. Tytgat, Kasper van Gelderen, Jose L. Lozano-Torres, Jan Roosien, Rikus Pomp, Casper van Schaik, Jaap Bakker, Aska Goverse, Geert Smant

Plant Physiol. Oct 2012, 160 (2) 944-954; DOI: https://doi.org/10.1104/pp.112.200188
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Nitric Oxide-Mediated Maintenance of Redox Homeostasis Contributes to NPR1-Dependent Plant Innate Immunity Triggered by Lipopolysaccharides
Aizhen Sun, Shengjun Nie, Da Xing

Plant Physiol. Oct 2012, 160 (2) 1081-1096; DOI: https://doi.org/10.1104/pp.112.201798

WHOLE PLANT AND ECOPHYSIOLOGY

Open Access
Analysis of Xylem Sap from Functional (Nonembolized) and Nonfunctional (Embolized) Vessels of Populus nigra: Chemistry of Refilling
Francesca Secchi, Maciej A. Zwieniecki

Plant Physiol. Oct 2012, 160 (2) 955-964; DOI: https://doi.org/10.1104/pp.112.200824
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The Grapevine Root-Specific Aquaporin VvPIP2;4N Controls Root Hydraulic Conductance and Leaf Gas Exchange under Well-Watered Conditions But Not under Water Stress
Irene Perrone, Giorgio Gambino, Walter Chitarra, Marco Vitali, Chiara Pagliarani, Nadia Riccomagno, Raffaella Balestrini, Ralf Kaldenhoff, Norbert Uehlein, Ivana Gribaudo, Andrea Schubert, Claudio Lovisolo

Plant Physiol. Oct 2012, 160 (2) 965-977; DOI: https://doi.org/10.1104/pp.112.203455
Open Access
Diffusion Limitations in Root Uptake of Cadmium and Zinc, But Not Nickel, and Resulting Bias in the Michaelis Constant
Fien Degryse, Afsaneh Shahbazi, Liesbeth Verheyen, Erik Smolders

Plant Physiol. Oct 2012, 160 (2) 1097-1109; DOI: https://doi.org/10.1104/pp.112.202200
Open Access
Stem Transcriptome Reveals Mechanisms to Reduce the Energetic Cost of Shade-Avoidance Responses in Tomato
Juan Ignacio Cagnola, Edmundo Ploschuk, Tomás Benech-Arnold, Scott A. Finlayson, Jorge José Casal

Plant Physiol. Oct 2012, 160 (2) 1110-1119; DOI: https://doi.org/10.1104/pp.112.201921
Open Access
Composition and Physiological Function of the Wax Layers Coating Arabidopsis Leaves: β-Amyrin Negatively Affects the Intracuticular Water Barrier
Christopher Buschhaus, Reinhard Jetter

Plant Physiol. Oct 2012, 160 (2) 1120-1129; DOI: https://doi.org/10.1104/pp.112.198473
Open Access
Green Revolution Trees: Semidwarfism Transgenes Modify Gibberellins, Promote Root Growth, Enhance Morphological Diversity, and Reduce Competitiveness in Hybrid Poplar
Ani A. Elias, Victor B. Busov, Kevin R. Kosola, Cathleen Ma, Elizabeth Etherington, Olga Shevchenko, Harish Gandhi, David W. Pearce, Stewart B. Rood, Steven H. Strauss

Plant Physiol. Oct 2012, 160 (2) 1130-1144; DOI: https://doi.org/10.1104/pp.112.200741

SYSTEMS BIOLOGY, MOLECULAR BIOLOGY, AND GENE REGULATION

Open Access
Transparent Testa16 Plays Multiple Roles in Plant Development and Is Involved in Lipid Synthesis and Embryo Development in Canola
Wei Deng, Guanqun Chen, Fred Peng, Martin Truksa, Crystal L. Snyder, Randall J. Weselake

Plant Physiol. Oct 2012, 160 (2) 978-989; DOI: https://doi.org/10.1104/pp.112.198713
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Roles of DICER-LIKE and ARGONAUTE Proteins in TAS-Derived Small Interfering RNA-Triggered DNA Methylation
Liang Wu, Long Mao, Yijun Qi

Plant Physiol. Oct 2012, 160 (2) 990-999; DOI: https://doi.org/10.1104/pp.112.200279
Open Access
Positive Regulation of psbA Gene Expression by cis-Encoded Antisense RNAs in Synechocystis sp. PCC 6803
Isamu Sakurai, Damir Stazic, Marion Eisenhut, Eerika Vuorio, Claudia Steglich, Wolfgang R. Hess, Eva-Mari Aro

Plant Physiol. Oct 2012, 160 (2) 1000-1010; DOI: https://doi.org/10.1104/pp.112.202127
Open Access
MdCOP1 Ubiquitin E3 Ligases Interact with MdMYB1 to Regulate Light-Induced Anthocyanin Biosynthesis and Red Fruit Coloration in Apple
Yuan-Yuan Li, Ke Mao, Cheng Zhao, Xian-Yan Zhao, Hua-Lei Zhang, Huai-Rui Shu, Yu-Jin Hao

Plant Physiol. Oct 2012, 160 (2) 1011-1022; DOI: https://doi.org/10.1104/pp.112.199703
Open Access
The Effect of TRANSPARENT TESTA2 on Seed Fatty Acid Biosynthesis and Tolerance to Environmental Stresses during Young Seedling Establishment in Arabidopsis
Mingxun Chen, Zhong Wang, Yana Zhu, Zhilan Li, Nazim Hussain, Lijie Xuan, Wanli Guo, Guoping Zhang, Lixi Jiang

Plant Physiol. Oct 2012, 160 (2) 1023-1036; DOI: https://doi.org/10.1104/pp.112.202945
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Putative Glycosyltransferases and Other Plant Golgi Apparatus Proteins Are Revealed by LOPIT Proteomics
Nino Nikolovski, Denis Rubtsov, Marcelo P. Segura, Godfrey P. Miles, Tim J. Stevens, Tom P.J. Dunkley, Sean Munro, Kathryn S. Lilley, Paul Dupree

Plant Physiol. Oct 2012, 160 (2) 1037-1051; DOI: https://doi.org/10.1104/pp.112.204263
Open Access
A Set of Regioselective O-Methyltransferases Gives Rise to the Complex Pattern of Methoxylated Flavones in Sweet Basil
Anna Berim, David C. Hyatt, David R. Gang

Plant Physiol. Oct 2012, 160 (2) 1052-1069; DOI: https://doi.org/10.1104/pp.112.204164

CORRECTIONS

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CORRECTIONS
Plant Physiol. Oct 2012, 160 (2) 1145; DOI: https://doi.org/10.1104/pp.112.900446
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CORRECTIONS
Plant Physiol. Oct 2012, 160 (2) 1146; DOI: https://doi.org/10.1104/pp.112.900447

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Table of Contents

ON THE INSIDE

UPDATES

BREAKTHROUGH TECHNOLOGIES

BIOINFORMATICS

BIOCHEMICAL PROCESSES AND MACROMOLECULAR STRUCTURES

BIOENERGETICS AND PHOTOSYNTHESIS

CELL BIOLOGY AND SIGNAL TRANSDUCTION

DEVELOPMENT AND HORMONE ACTION

ENVIRONMENTAL STRESS AND ADAPTATION TO STRESS

GENETICS, GENOMICS, AND MOLECULAR EVOLUTION

PLANTS INTERACTING WITH OTHER ORGANISMS

WHOLE PLANT AND ECOPHYSIOLOGY

SYSTEMS BIOLOGY, MOLECULAR BIOLOGY, AND GENE REGULATION

CORRECTIONS

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