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Table of Contents

Plant Physiology: 178 (3)
Nov 2018

ON THE INSIDE

  • You have accessRestricted Access
    On the Inside
    Peter V. Minorsky
    Plant Physiol. Nov 2018, 178 (3) 950-951; DOI: https://doi.org/10.1104/pp.18.01279

EDITORIAL

  • You have accessRestricted Access
    Plant Physiology Introduces New Editorial and News Formats for Reader Contributions and Discussion
    Mike Blatt
    Plant Physiol. Nov 2018, 178 (3) 952; DOI: https://doi.org/10.1104/pp.18.01188

LETTER TO THE EDITOR

  • What Is the Minimal Optimal Sample Size for Plant Ecophysiological Studies?
    You have accessRestricted Access
    What Is the Minimal Optimal Sample Size for Plant Ecophysiological Studies?
    Marina Pérez-Llorca, Erola Fenollosa, Roberto Salguero-Gómez, Sergi Munné-Bosch
    Plant Physiol. Nov 2018, 178 (3) 953-955; DOI: https://doi.org/10.1104/pp.18.01001

NEWS AND VIEWS

  • You have accessRestricted Access
    Setting and Diffusing the Cyanide Bomb in Plant Defense
    Trevor H. Yeats
    Plant Physiol. Nov 2018, 178 (3) 956-957; DOI: https://doi.org/10.1104/pp.18.01214
  • You have accessRestricted Access
    Autophagy and Chloroplast Quality Control: Fatty Acid Synthesis Counts
    Chunhua Zhang
    Plant Physiol. Nov 2018, 178 (3) 958-959; DOI: https://doi.org/10.1104/pp.18.01230

LETTERS

  • <em>genome uncoupled1</em> Mutants Are Hypersensitive to Norflurazon and Lincomycin
    Open Access
    genome uncoupled1 Mutants Are Hypersensitive to Norflurazon and Lincomycin
    Xiaobo Zhao, Jianyan Huang, Joanne Chory
    Plant Physiol. Nov 2018, 178 (3) 960-964; DOI: https://doi.org/10.1104/pp.18.00772

    Arabidopsis gun1 mutants show hypersensitive phenotypes to both norflurazon and lincomycin.

  • The <em>genomes uncoupled</em> Mutants Are More Sensitive to Norflurazon Than Wild Type
    Open Access
    The genomes uncoupled Mutants Are More Sensitive to Norflurazon Than Wild Type
    Lijuan Song, Zefan Chen, Robert M. Larkin
    Plant Physiol. Nov 2018, 178 (3) 965-971; DOI: https://doi.org/10.1104/pp.18.00982

    The increased sensitivity of the genomes uncoupled mutants to norflurazon indicates that they are probably deficient in plastid-to-nucleus signaling and are unequivocally not resistant to norflurazon.

TOPICAL REVIEW

  • Halophytism: What Have We Learnt From <em>Arabidopsis thaliana</em> Relative Model Systems?
    Open Access
    Halophytism: What Have We Learnt From Arabidopsis thaliana Relative Model Systems?
    Yana Kazachkova, Gil Eshel, Pramod Pantha, John M. Cheeseman, Maheshi Dassanayake, Simon Barak
    Plant Physiol. Nov 2018, 178 (3) 972-988; DOI: https://doi.org/10.1104/pp.18.00863

BREAKTHROUGH TECHNOLOGIES

  • Engineering Artificial MicroRNAs for Multiplex Gene Silencing and Simplified Transgenic Screen
    You have accessRestricted Access
    Engineering Artificial MicroRNAs for Multiplex Gene Silencing and Simplified Transgenic Screen
    Nannan Zhang, Dandan Zhang, Samuel L. Chen, Ben-Qiang Gong, Yanjun Guo, Lahong Xu, Xiao-Ning Zhang, Jian-Feng Li
    Plant Physiol. Nov 2018, 178 (3) 989-1001; DOI: https://doi.org/10.1104/pp.18.00828

    Improvements to amiRNA technology, including amiRNA design, transgenic screening for maximal gene-silencing mutants, and multiplex performance, facilitate its applications in plants.

Articles

  • ECOPHYSIOLOGY AND SUSTAINABILITY

    • An in Vivo Imaging Assay Detects Spatial Variability in Glucose Release from Plant Roots
      Open Access
      An in Vivo Imaging Assay Detects Spatial Variability in Glucose Release from Plant Roots
      Priyamvada Voothuluru, David M. Braun, John S. Boyer
      Plant Physiol. Nov 2018, 178 (3) 1002-1010; DOI: https://doi.org/10.1104/pp.18.00614

      A gel-based, enzyme-coupled imaging assay demonstrates tightly regulated and species-specific spatial patterns of glucose release from roots.

  • BIOCHEMISTRY AND METABOLISM

    • The Patterned Structure of Galactoglucomannan Suggests It May Bind to Cellulose in Seed Mucilage
      Open Access
      The Patterned Structure of Galactoglucomannan Suggests It May Bind to Cellulose in Seed Mucilage
      Li Yu, Jan J. Lyczakowski, Caroline S. Pereira, Toshihisa Kotake, Xiaolan Yu, An Li, Soren Mogelsvang, Munir S. Skaf, Paul Dupree
      Plant Physiol. Nov 2018, 178 (3) 1011-1026; DOI: https://doi.org/10.1104/pp.18.00709

      Galactoglucomannan synthesized by CSLA2 and MAGT1 has a patterned structure that may influence the mode of binding to cellulose fibrils.

    • Early Senescence in Older Leaves of Low Nitrate-Grown <em>Atxdh1</em> Uncovers a Role for Purine Catabolism in N Supply
      Open Access
      Early Senescence in Older Leaves of Low Nitrate-Grown Atxdh1 Uncovers a Role for Purine Catabolism in N Supply
      Aigerim Soltabayeva, Sudhakar Srivastava, Assylay Kurmanbayeva, Aizat Bekturova, Robert Fluhr, Moshe Sagi
      Plant Physiol. Nov 2018, 178 (3) 1027-1044; DOI: https://doi.org/10.1104/pp.18.00795

      Purine catabolism mutants reveal a role for purine-related nitrogen sources in older leaves during low nitrate supply.

    • Identification of Key Enzymes for Pectin Synthesis in Seed Mucilage
      Open Access
      Identification of Key Enzymes for Pectin Synthesis in Seed Mucilage
      Cătălin Voiniciuc, Kristen A. Engle, Markus Günl, Sabine Dieluweit, Maximilian Heinrich-Wilhelm Schmidt, Jeong-Yeh Yang, Kelley W. Moremen, Debra Mohnen, Björn Usadel
      Plant Physiol. Nov 2018, 178 (3) 1045-1064; DOI: https://doi.org/10.1104/pp.18.00584

      Mutations in two glycosyltransferase-encoding genes severely impair the elongation of pectic rhamnogalacturonan I, resulting in hydrophobic seeds that do not release mucilage polymers.

    • Differential Roles of the Thylakoid Lumenal Deg Protease Homologs in Chloroplast Proteostasis
      You have accessRestricted Access
      Differential Roles of the Thylakoid Lumenal Deg Protease Homologs in Chloroplast Proteostasis
      Yana Butenko, Albina Lin, Leah Naveh, Meital Kupervaser, Yishai Levin, Ziv Reich, Zach Adam
      Plant Physiol. Nov 2018, 178 (3) 1065-1080; DOI: https://doi.org/10.1104/pp.18.00912

      Physiological, biochemical, and proteomic analyses of Arabidopsis mutants reveal the relationship between Deg1 and Deg5-Deg8 protease complexes and demonstrate a more prominent role in growth for Deg1.

    • Reconfigured Cyanogenic Glucoside Biosynthesis in <em>Eucalyptus cladocalyx</em> Involves a Cytochrome P450 CYP706C55
      Open Access
      Reconfigured Cyanogenic Glucoside Biosynthesis in Eucalyptus cladocalyx Involves a Cytochrome P450 CYP706C55
      Cecilie Cetti Hansen, Mette Sørensen, Thiago A.M. Veiga, Juliane F.S. Zibrandtsen, Allison M. Heskes, Carl Erik Olsen, Berin A. Boughton, Birger Lindberg Møller, Elizabeth H.J. Neilson
      Plant Physiol. Nov 2018, 178 (3) 1081-1095; DOI: https://doi.org/10.1104/pp.18.00998

      Cyanogenic glucoside biosynthesis in Eucalyptus cladocalyx requires an additional pathway step, involving three CYPs from the CYP79, CYP706, and CYP71 families, and a glucosyltransferase UGT85.

    • Elucidation of the Amygdalin Pathway Reveals the Metabolic Basis of Bitter and Sweet Almonds (<em>Prunus dulcis</em>)
      Open Access
      Elucidation of the Amygdalin Pathway Reveals the Metabolic Basis of Bitter and Sweet Almonds (Prunus dulcis)
      Sara Thodberg, Jorge Del Cueto, Rosa Mazzeo, Stefano Pavan, Concetta Lotti, Federico Dicenta, Elizabeth H. Jakobsen Neilson, Birger Lindberg Møller, Raquel Sánchez-Pérez
      Plant Physiol. Nov 2018, 178 (3) 1096-1111; DOI: https://doi.org/10.1104/pp.18.00922

      Two missing enzyme activities in the amygdalan pathway result in sweet versus formation of bitter almonds.

  • CELL BIOLOGY

    • Chloroplast Damage Induced by the Inhibition of Fatty Acid Synthesis Triggers Autophagy in Chlamydomonas
      Open Access
      Chloroplast Damage Induced by the Inhibition of Fatty Acid Synthesis Triggers Autophagy in Chlamydomonas
      Luis Gonzaga Heredia-Martínez, Ascensión Andrés-Garrido, Enrique Martínez-Force, María Esther Pérez-Pérez, José L. Crespo
      Plant Physiol. Nov 2018, 178 (3) 1112-1129; DOI: https://doi.org/10.1104/pp.18.00630

      Inhibition of fatty acid synthase in Chlamydomonas activates major catabolic pathways, including autophagy, through a mechanism that involves the activation of a chloroplast quality control system.

    • Actin Reorganization Triggers Rapid Cell Elongation in Roots
      You have accessRestricted Access
      Actin Reorganization Triggers Rapid Cell Elongation in Roots
      Hirotomo Takatsuka, Takumi Higaki, Masaaki Umeda
      Plant Physiol. Nov 2018, 178 (3) 1130-1141; DOI: https://doi.org/10.1104/pp.18.00557

      Cytokinin signaling promotes actin bundling in Arabidopsis root cells, which triggers rapid cell elongation.

    • Comparison of Micropore Distribution in Cell Walls of Softwood and Hardwood Xylem
      You have accessRestricted Access
      Comparison of Micropore Distribution in Cell Walls of Softwood and Hardwood Xylem
      Lloyd A. Donaldson, Mathew Cairns, Stefan J. Hill
      Plant Physiol. Nov 2018, 178 (3) 1142-1153; DOI: https://doi.org/10.1104/pp.18.00883

      Molecular microscopy shows that distribution of porosity across the secondary cell wall in xylem is predominantly related to the degree of lignification in different cell wall layers.

  • GENES, DEVELOPMENT AND EVOLUTION

    • Arabidopsis <em>PIRL6</em> Is Essential for Male and Female Gametogenesis and Is Regulated by Alternative Splicing
      Open Access
      Arabidopsis PIRL6 Is Essential for Male and Female Gametogenesis and Is Regulated by Alternative Splicing
      Nancy R. Forsthoefel, Kendra A. Klag, Savannah R. McNichol, Claire E. Arnold, Corina R. Vernon, Whitney W. Wood, Daniel M. Vernon
      Plant Physiol. Nov 2018, 178 (3) 1154-1169; DOI: https://doi.org/10.1104/pp.18.00329

      A leucine-rich repeat protein related to animal cell signaling components is important for gametogenesis, with gametophytespecific expression achieved by alternative mRNA splicing.

    • FLOWERING LOCUS T3 Controls Spikelet Initiation But Not Floral Development
      Open Access
      FLOWERING LOCUS T3 Controls Spikelet Initiation But Not Floral Development
      Muhammad Aman Mulki, Xiaojing Bi, Maria von Korff
      Plant Physiol. Nov 2018, 178 (3) 1170-1186; DOI: https://doi.org/10.1104/pp.18.00236

      FLOWERING LOCUS T3 (FT3) promotes spikelet formation but not floral development under long- and short-day conditions in barley.

    • Timing and Order of the Molecular Events Marking the Onset of Berry Ripening in Grapevine
      Open Access
      Timing and Order of the Molecular Events Marking the Onset of Berry Ripening in Grapevine
      Marianna Fasoli, Chandra L. Richter, Sara Zenoni, Edoardo Bertini, Nicola Vitulo, Silvia Dal Santo, Nick Dokoozlian, Mario Pezzotti, Giovanni Battista Tornielli
      Plant Physiol. Nov 2018, 178 (3) 1187-1206; DOI: https://doi.org/10.1104/pp.18.00559

      A transcriptomic and metabolomic map of grape berry development elucidates timing and order of the key events of the global reprogramming featuring the ripening process.

    • A Trihelix Family Transcription Factor Is Associated with Key Genes in Mixed-Linkage Glucan Accumulation
      Open Access
      A Trihelix Family Transcription Factor Is Associated with Key Genes in Mixed-Linkage Glucan Accumulation
      Mingzhu Fan, Klaus Herburger, Jacob K. Jensen, Starla Zemelis-Durfee, Federica Brandizzi, Stephen C. Fry, Curtis G. Wilkerson
      Plant Physiol. Nov 2018, 178 (3) 1207-1221; DOI: https://doi.org/10.1104/pp.18.00978

      A trihelix family transcription factor regulates the expression of a mixed-linkage glucan biosynthesis gene and a gene encoding a MLG:xyloglucan endotransglucosylase.

    • Evidence for the Regulation of Gynoecium Morphogenesis by <em>ETTIN</em> via Cell Wall Dynamics
      You have accessRestricted Access
      Evidence for the Regulation of Gynoecium Morphogenesis by ETTIN via Cell Wall Dynamics
      Amélie Andres-Robin, Mathieu C. Reymond, Antoine Dupire, Virginie Battu, Nelly Dubrulle, Grégory Mouille, Valérie Lefebvre, Jérôme Pelloux, Arezki Boudaoud, Jan Traas, Charles P. Scutt, Françoise Monéger
      Plant Physiol. Nov 2018, 178 (3) 1222-1232; DOI: https://doi.org/10.1104/pp.18.00745

      ETTIN, a transcription factor also known as Auxin Response Factor 3, enhances PME activity in the valve tissue, thus maintaining low cell wall stiffness and proper gynoecium morphogenesis.

    • <em>INCREASING NODULE SIZE1</em> Expression Is Required for Normal Rhizobial Symbiosis and Nodule Development
      Open Access
      INCREASING NODULE SIZE1 Expression Is Required for Normal Rhizobial Symbiosis and Nodule Development
      Xinxin Li, Jiakun Zheng, Yongqing Yang, Hong Liao
      Plant Physiol. Nov 2018, 178 (3) 1233-1248; DOI: https://doi.org/10.1104/pp.18.01018

      GmINS1, a candidate gene underlying a major QTL for nodulation, functions in nodule development and is important for nitrogen fixation in soybean.

    • Time-Course Transcriptome Analysis of Arabidopsis Siliques Discloses Genes Essential for Fruit Development and Maturation
      You have accessRestricted Access
      Time-Course Transcriptome Analysis of Arabidopsis Siliques Discloses Genes Essential for Fruit Development and Maturation
      Chiara Mizzotti, Lisa Rotasperti, Marco Moretto, Luca Tadini, Francesca Resentini, Bianca M. Galliani, Massimo Galbiati, Kristof Engelen, Paolo Pesaresi, Simona Masiero
      Plant Physiol. Nov 2018, 178 (3) 1249-1268; DOI: https://doi.org/10.1104/pp.18.00727

      Dynamic changes in the transcriptome of developing seedless fruits reveals key regulators of fruit growth and maturation.

  • MEMBRANES, TRANSPORT AND BIOENERGETICS

    • Nodulin Intrinsic Protein 7;1 Is a Tapetal Boric Acid Channel Involved in Pollen Cell Wall Formation
      Open Access
      Nodulin Intrinsic Protein 7;1 Is a Tapetal Boric Acid Channel Involved in Pollen Cell Wall Formation
      Pratyush Routray, Tian Li, Arisa Yamasaki, Akira Yoshinari, Junpei Takano, Won Gyu Choi, Carl E. Sams, Daniel M. Roberts
      Plant Physiol. Nov 2018, 178 (3) 1269-1283; DOI: https://doi.org/10.1104/pp.18.00604

      NIP7;1 is a dicot-specific boric acid permease on the plasma membrane of tapetum cells, and is necessary for pollen exine wall formation during microsporogenesis under limiting boric acid conditions.

  • SIGNALING AND RESPONSE

    • MKK6 Functions in Two Parallel MAP Kinase Cascades in Immune Signaling
      Open Access
      MKK6 Functions in Two Parallel MAP Kinase Cascades in Immune Signaling
      Kehui Lian, Fang Gao, Tongjun Sun, Rowan van Wersch, Kevin Ao, Qing Kong, Yukino Nitta, Di Wu, Patrick Krysan, Yuelin Zhang
      Plant Physiol. Nov 2018, 178 (3) 1284-1295; DOI: https://doi.org/10.1104/pp.18.00592

      Arabidopsis MKK6 has multiple functions in plant defense responses in addition to its role in cytokinesis.

    • MdMYB88 and MdMYB124 Enhance Drought Tolerance by Modulating Root Vessels and Cell Walls in Apple
      Open Access
      MdMYB88 and MdMYB124 Enhance Drought Tolerance by Modulating Root Vessels and Cell Walls in Apple
      Dali Geng, Pengxiang Chen, Xiaoxia Shen, Yi Zhang, Xuewei Li, Lijuan Jiang, Yinpeng Xie, Chundong Niu, Jing Zhang, Xiaohua Huang, Fengwang Ma, Qingmei Guan
      Plant Physiol. Nov 2018, 178 (3) 1296-1309; DOI: https://doi.org/10.1104/pp.18.00502

      MdMYB88 and MdMYB124 are critical for apple (Malus × domestica) tolerance to drought by mediating root architecture, xylem vessel development, and cell wall deposition.

    • Distinct Roles of Non-Overlapping Surface Regions of the Coiled-Coil Domain in the Potato Immune Receptor Rx1
      Open Access
      Distinct Roles of Non-Overlapping Surface Regions of the Coiled-Coil Domain in the Potato Immune Receptor Rx1
      Erik J. Slootweg, Laurentiu N. Spiridon, Eliza C. Martin, Wladimir I.L. Tameling, Philip D. Townsend, Rikus Pomp, Jan Roosien, Olga Drawska, Octavina C.A. Sukarta, Arjen Schots, Jan Willem Borst, Matthieu H.A.J. Joosten, Jaap Bakker, Geert Smant, Martin J. Cann, Andrei-Jose Petrescu, Aska Goverse
      Plant Physiol. Nov 2018, 178 (3) 1310-1331; DOI: https://doi.org/10.1104/pp.18.00603

      Mutation of the coiled-coil domain of the intracellular immune receptor Rx1 led to distinct cell death and resistance phenotypes and revealed regions of Rx1 required for interactions between Rx1 and the co-factor RanGAP2.

    • VAMP711 Is Required for Abscisic Acid-Mediated Inhibition of Plasma Membrane H<sup>+</sup>-ATPase Activity
      Open Access
      VAMP711 Is Required for Abscisic Acid-Mediated Inhibition of Plasma Membrane H+-ATPase Activity
      Yuan Xue, Yongqing Yang, Zhijia Yang, Xiangfeng Wang, Yan Guo
      Plant Physiol. Nov 2018, 178 (3) 1332-1343; DOI: https://doi.org/10.1104/pp.18.00499

      The SNARE protein VAMP711 is involved in regulating abscisic acid-mediated inhibition of plasma membrane H+-ATPase activity in response to drought stress.

    • Non-Enzymatic Synthesis of Bioactive Isoprostanoids in the Diatom <em>Phaeodactylum</em> following Oxidative Stress
      You have accessRestricted Access
      Non-Enzymatic Synthesis of Bioactive Isoprostanoids in the Diatom Phaeodactylum following Oxidative Stress
      Josselin Lupette, Antoine Jaussaud, Claire Vigor, Camille Oger, Jean-Marie Galano, Guillaume Réversat, Joseph Vercauteren, Juliette Jouhet, Thierry Durand, Eric Maréchal
      Plant Physiol. Nov 2018, 178 (3) 1344-1357; DOI: https://doi.org/10.1104/pp.18.00925

      The non-enzymatic peroxidation of polyunsaturated fatty acids present in phosphatidylcholine and betaine lipids generates isoprostanoids that mediate part of the oxidative stress response.

    • Chloroplast Accumulation Response Enhances Leaf Photosynthesis and Plant Biomass Production
      You have accessRestricted Access
      Chloroplast Accumulation Response Enhances Leaf Photosynthesis and Plant Biomass Production
      Eiji Gotoh, Noriyuki Suetsugu, Wataru Yamori, Kazuhiro Ishishita, Ryota Kiyabu, Masako Fukuda, Takeshi Higa, Bungo Shirouchi, Masamitsu Wada
      Plant Physiol. Nov 2018, 178 (3) 1358-1369; DOI: https://doi.org/10.1104/pp.18.00484

      Chloroplast accumulation response facilitates efficient light capture in leaves and is required for the enhancement of leaf photosynthesis and plant biomass production.

    • Root Gravitropism Is Regulated by a Crosstalk between <em>para</em>-Aminobenzoic Acid, Ethylene, and Auxin
      Open Access
      Root Gravitropism Is Regulated by a Crosstalk between para-Aminobenzoic Acid, Ethylene, and Auxin
      Hugues Nziengui, Hanna Lasok, Philip Kochersperger, Benedetto Ruperti, Fabrice Rébeillé, Klaus Palme, Franck Anicet Ditengou
      Plant Physiol. Nov 2018, 178 (3) 1370-1389; DOI: https://doi.org/10.1104/pp.18.00126

      Endogenous free para-aminobenzoic acid levels modulate the auxin-ethylene crosstalk necessary for root gravitropism

    • SENSITIVE TO SALT1, An Endoplasmic Reticulum-Localized Chaperone, Positively Regulates Salt Resistance
      You have accessRestricted Access
      SENSITIVE TO SALT1, An Endoplasmic Reticulum-Localized Chaperone, Positively Regulates Salt Resistance
      Peiyan Guan, Jun Wang, Hui Li, Chen Xie, Shizhong Zhang, Changai Wu, Guodong Yang, Kang Yan, Jinguang Huang, Chengchao Zheng
      Plant Physiol. Nov 2018, 178 (3) 1390-1405; DOI: https://doi.org/10.1104/pp.18.00840

      Molecular chaperone SES1 positively regulates salt stress resistance by alleviating salt-induced ER stress.

    • Digital Imaging Combined with Genome-Wide Association Mapping Links Loci to Plant-Pathogen Interaction Traits
      Open Access
      Digital Imaging Combined with Genome-Wide Association Mapping Links Loci to Plant-Pathogen Interaction Traits
      Rachel F. Fordyce, Nicole E. Soltis, Celine Caseys, Raoni Gwinner, Jason A. Corwin, Susana Atwell, Daniel Copeland, Julie Feusier, Anushriya Subedy, Robert Eshbaugh, Daniel J. Kliebenstein
      Plant Physiol. Nov 2018, 178 (3) 1406-1422; DOI: https://doi.org/10.1104/pp.18.00851

      Computer vision allows the identification of genes controlling uncharacterized lesion traits in Arabidopsis.

CORRECTIONS

  • You have accessRestricted Access
    CORRECTION
    Plant Physiol. Nov 2018, 178 (3) 1423; DOI: https://doi.org/10.1104/pp.18.01168
  • You have accessRestricted Access
    CORRECTION
    Plant Physiol. Nov 2018, 178 (3) 1424-1425; DOI: https://doi.org/10.1104/pp.18.01200
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In this issue

Plant Physiology: 178 (3)
Plant Physiology
Vol. 178, Issue 3
Nov 2018
  • Table of Contents
  • Table of Contents (PDF)
  • Cover (PDF)
  • About the Cover
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Jump to

  • ON THE INSIDE
  • EDITORIAL
  • LETTER TO THE EDITOR
  • NEWS AND VIEWS
  • LETTERS
  • TOPICAL REVIEW
  • BREAKTHROUGH TECHNOLOGIES
  • Articles
    • ECOPHYSIOLOGY AND SUSTAINABILITY
    • BIOCHEMISTRY AND METABOLISM
    • CELL BIOLOGY
    • GENES, DEVELOPMENT AND EVOLUTION
    • MEMBRANES, TRANSPORT AND BIOENERGETICS
    • SIGNALING AND RESPONSE
  • CORRECTIONS

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