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Functional classification for "List1" (MIPS)


Terms from the Functional Classification (MIPS) exceeding a pvalue cutoff of 0.01

Functional term List frequency Background frequency of use (Genome) Corrected P-value of over-representation Genes annotated to the term
unannotated 17 out of 209 genes, 8.1% 1 out of 23473 genes, 0.0% 0 At3g02910, At3g09805, At3g19030, At1g14340, At5g62900, At1g32920, At5g54130, At5g65660, At3g14940, At5g40730, At2g41730, At5g39590, At3g17610, At1g07610, At1g16170, At5g54120, At2g42600
ENERGY 49 out of 209 genes, 23.4% 1703 out of 23473 genes, 7.3% 3.29e-11 At1g09780, At2g17820, At1g13440, At3g48990, At1g24280, At5g08570, At2g36580, At5g17380, At1g30510, At4g05390, At1g23870, At1g77760, At5g12860, At5g13110, At1g63940, At3g60750, At4g35260, At3g57040, At1g60140, At3g48100, At3g52930, At4g25835, At5g41670, At5g51460, At2g01140, At4g26970, At5g13420, At4g36380, At1g74030, At2g22480, At2g30970, At4g30190, At4g15700, At5g14040, At2g38180, At3g28510, At5g50850, At1g64190, At2g15620, At4g18010, At3g13930, At5g14760, At5g03290, At3g47520, At5g53460, At1g78050, At3g45140, At2g31950, At5g18600
METABOLISM 97 out of 209 genes, 46.4% 5915 out of 23473 genes, 25.2% 5.17e-09 At3g61190, At3g48990, At1g24280, At5g18840, At4g05390, At1g23870, At1g77760, At5g07890, At1g36370, At1g63940, At3g60750, At1g60140, At5g04590, At2g30020, At3g52930, At2g14920, At5g04540, At5g51460, At2g29090, At2g01140, At2g26980, At3g11410, At4g36380, At4g36670, At1g74030, At2g30970, At2g43760, At5g14040, At2g38180, At5g50850, At4g32950, At1g73920, At1g48600, At2g15620, At1g64190, At1g44100, At4g18010, At5g47560, At1g73600, At5g03290, At1g70410, At1g62180, At3g47520, At3g22850, At1g78050, At5g54170, At1g08650, At5g18600, At5g57560, At3g13110, At2g17820, At1g09780, At1g13440, At1g15550, At3g58610, At5g08570, At2g36580, At5g17380, At1g30510, At5g65010, At1g22650, At5g13110, At5g12860, At4g34950, At4g35260, At3g16560, At1g22400, At3g63110, At1g55920, At3g48100, At5g40850, At4g34860, At5g50210, At2g30040, At2g41560, At1g55120, At3g05400, At1g08090, At5g41670, At4g26970, At1g04770, At5g13420, At2g22480, At4g30190, At4g30470, At4g15700, At1g49860, At5g42830, At2g40140, At3g13930, At5g14760, At1g43710, At5g53460, At2g22500, At3g45140, At2g42070, At2g31950
glycolysis and gluconeogenesis 14 out of 209 genes, 6.7% 226 out of 23473 genes, 1.0% 3.90e-06 At1g09780, At1g13440, At2g01140, At3g13930, At5g03290, At5g08570, At3g47520, At4g35260, At2g36580, At2g22480, At1g74030, At1g78050, At3g52930, At5g50850
C-compound and carbohydrate metabolism 47 out of 209 genes, 22.5% 2316 out of 23473 genes, 9.9% 1.28e-05 At3g13110, At1g09780, At2g17820, At1g13440, At3g48990, At1g24280, At5g08570, At5g18840, At2g36580, At5g17380, At1g23870, At1g22650, At5g12860, At5g13110, At4g34950, At1g36370, At3g60750, At4g35260, At1g60140, At1g22400, At1g55920, At4g34860, At3g52930, At1g55120, At3g05400, At1g08090, At5g41670, At5g51460, At2g01140, At5g13420, At1g74030, At4g36670, At2g22480, At4g30470, At5g50850, At2g38180, At1g64190, At4g18010, At5g47560, At3g13930, At5g14760, At5g03290, At3g47520, At1g70410, At1g78050, At2g22500, At5g57560
C-compound and carbohydrate utilization 37 out of 209 genes, 17.7% 1664 out of 23473 genes, 7.1% 4.92e-05 At3g13110, At1g09780, At2g17820, At1g13440, At3g48990, At1g24280, At5g08570, At2g36580, At5g17380, At1g23870, At1g22650, At5g13110, At3g60750, At4g35260, At1g60140, At1g55920, At4g34860, At3g52930, At1g55120, At5g41670, At5g51460, At2g01140, At5g13420, At1g74030, At2g22480, At4g30470, At5g50850, At2g38180, At1g64190, At4g18010, At5g14760, At3g13930, At1g70410, At3g47520, At5g03290, At1g78050, At5g57560
nitrogen and sulfur metabolism 15 out of 209 genes, 7.2% 380 out of 23473 genes, 1.6% 0.00041 At2g14920, At3g13110, At2g29090, At2g15620, At1g63940, At1g62180, At3g22850, At5g53460, At1g30510, At5g04590, At1g55920, At2g30970, At4g05390, At2g31950, At5g65010
tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle) 8 out of 209 genes, 3.8% 97 out of 23473 genes, 0.4% 0.00059 At3g13930, At4g26970, At5g14760, At5g03290, At4g35260, At5g17380, At2g30970, At5g50850
TRANSPORT FACILITATION 41 out of 209 genes, 19.6% 2197 out of 23473 genes, 9.4% 0.00093 At1g13440, At5g18840, At1g30510, At4g00630, At4g05390, At2g38170, At1g80440, At2g27510, At1g78000, At4g21680, At5g12860, At4g34950, At3g60160, At1g63940, At3g51860, At1g77990, At1g12110, At2g41560, At3g05400, At1g08090, At5g41670, At2g16060, At4g26970, At3g27170, At5g13550, At4g36670, At4g30190, At3g10520, At4g15700, At5g14040, At1g64190, At1g44100, At5g47560, At5g14760, At5g53460, At5g54170, At2g22500, At2g29120, At5g27150, At5g18600, At1g32450
pentose-phosphate pathway oxidative branch 4 out of 209 genes, 1.9% 13 out of 23473 genes, 0.1% 0.00095 At1g64190, At5g41670, At1g24280, At5g13110
pentose-phosphate pathway 8 out of 209 genes, 3.8% 105 out of 23473 genes, 0.4% 0.00107 At1g64190, At5g41670, At2g01140, At3g52930, At3g60750, At1g24280, At5g13420, At5g13110
nitrogen and sulfur utilization 11 out of 209 genes, 5.3% 228 out of 23473 genes, 1.0% 0.00157 At2g14920, At2g15620, At1g63940, At1g62180, At3g22850, At5g53460, At1g30510, At5g04590, At2g30970, At4g05390, At5g65010
other nitrogen and sulfur metabolism activities 5 out of 209 genes, 2.4% 33 out of 23473 genes, 0.1% 0.00240 At1g55920, At2g30970, At3g13110, At2g29090, At2g31950
amino acid metabolism 23 out of 209 genes, 11.0% 941 out of 23473 genes, 4.0% 0.00283 At3g61190, At3g13110, At2g29090, At2g15620, At1g44100, At1g63940, At3g60750, At3g58610, At5g14760, At1g43710, At1g62180, At3g22850, At5g53460, At5g17380, At1g30510, At5g04590, At1g55920, At2g30970, At4g05390, At5g65010, At1g77760, At5g50850, At1g36370
C-compound, carbohydrate catabolism 24 out of 209 genes, 11.5% 1046 out of 23473 genes, 4.5% 0.00510 At2g17820, At5g41670, At1g13440, At2g01140, At3g48990, At1g24280, At5g08570, At2g36580, At5g13420, At5g17380, At2g22480, At1g74030, At4g30470, At5g13110, At5g50850, At1g64190, At4g18010, At3g13930, At5g03290, At1g70410, At4g35260, At1g78050, At3g52930, At1g55120
anaerobic respiration 5 out of 209 genes, 2.4% 40 out of 23473 genes, 0.2% 0.00634 At3g48100, At2g15620, At2g31950, At1g63940, At3g57040
Last modified: Mon March 22, 2004.
Comments:
Rodrigo GutiƩrrez
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