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Functional classification for "List1" (MIPS)


Terms from the Functional Classification (MIPS) exceeding a pvalue cutoff of 0.01

Functional term List frequency Background frequency of use (genome) Corrected P-value of over-representation Genes annotated to the term
unannotated 27 out of 288 genes, 9.4% 1 out of 23473 genes, 0.0% 0 At2g28780, At3g09805, At3g19030, At5g49100, At3g02020, At1g14340, At1g80310, At2g25680, At4g35090, At1g67920, At1g32920, At5g62900, At5g54130, At3g14940, At5g67390, At1g75140, At3g07910, At3g25780, At1g49500, At3g18560, At1g61660, At5g39590, At3g17610, At1g07610, At1g16170, At2g36090, At1g49000
METABOLISM 127 out of 288 genes, 44.1% 5915 out of 23473 genes, 25.2% 5.35e-10 At3g61190, At5g06570, At3g48990, At1g24280, At5g18840, At3g19710, At5g59490, At5g15830, At4g05390, At2g31360, At1g23870, At1g66200, At1g77760, At1g22170, At2g28890, At5g23010, At1g59960, At2g29730, At1g49160, At1g63940, At2g31790, At3g60750, At3g52950, At4g31910, At1g18590, At5g04590, At2g30020, At3g13560, At5g58700, At3g52930, At2g29700, At1g21440, At1g74090, At5g45340, At3g50660, At4g18340, At3g12670, At3g23570, At4g24620, At3g07270, At2g14920, At5g04540, At5g51460, At5g35630, At2g26980, At1g31770, At4g36380, At3g58990, At1g74030, At4g36670, At2g30970, At1g60710, At2g43760, At4g17550, At5g50850, At1g31180, At3g60330, At4g32950, At1g73920, At1g48600, At2g15620, At1g64190, At1g44100, At5g47560, At1g73600, At3g47520, At1g62180, At1g70410, At3g22850, At5g54170, At1g78050, At1g19440, At1g08650, At1g50110, At1g67110, At3g22890, At1g09780, At3g58610, At1g19450, At2g36580, At2g43100, At1g30510, At3g63260, At5g13110, At5g12860, At4g34950, At5g54800, At4g35260, At3g16560, At1g08100, At3g63110, At1g55920, At5g40850, At1g78090, At4g34860, At1g72160, At2g30040, At2g41560, At1g62660, At1g17060, At1g31230, At1g08090, At5g41670, At3g01260, At4g26970, At5g13420, At3g15650, At1g13420, At2g22480, At4g30190, At5g51830, At1g59730, At3g13730, At4g30470, At1g58080, At2g31390, At1g49860, At4g38470, At5g42830, At3g13930, At5g14760, At1g43710, At5g53460, At2g22500, At2g42070, At2g31950, At1g53510
ENERGY 57 out of 288 genes, 19.8% 1703 out of 23473 genes, 7.3% 8.78e-10 At1g09780, At3g48990, At1g24280, At2g43100, At2g36580, At5g59490, At1g30510, At4g05390, At1g23870, At1g77760, At5g12860, At1g22170, At5g13110, At5g23010, At3g54900, At1g63940, At3g60750, At4g35260, At3g57040, At1g78090, At3g52930, At4g25835, At1g21440, At5g45340, At3g50660, At1g17060, At4g24620, At5g51460, At5g41670, At3g01260, At4g26970, At4g36380, At5g13420, At2g22480, At2g46620, At3g58990, At1g74030, At2g30970, At4g30190, At5g51830, At1g59730, At3g13730, At2g31390, At5g50850, At1g31180, At3g60330, At1g64190, At2g15620, At3g13930, At5g14760, At3g47520, At5g53460, At1g78050, At2g31950, At5g03340, At2g41310, At1g67110
glycolysis and gluconeogenesis 18 out of 288 genes, 6.2% 226 out of 23473 genes, 1.0% 1.28e-07 At1g09780, At3g01260, At2g36580, At2g22480, At1g74030, At5g51830, At2g31390, At1g22170, At5g23010, At5g50850, At1g31180, At3g13930, At3g47520, At4g35260, At1g78050, At3g52930, At1g21440, At4g24620
nitrogen and sulfur utilization 16 out of 288 genes, 5.6% 228 out of 23473 genes, 1.0% 7.38e-06 At2g14920, At3g22890, At2g15620, At5g35630, At1g63940, At1g62180, At3g22850, At5g53460, At1g13420, At1g30510, At1g18590, At5g04590, At2g30970, At4g05390, At1g66200, At3g07270
amino acid metabolism 32 out of 288 genes, 11.1% 941 out of 23473 genes, 4.0% 6.10e-05 At3g61190, At5g35630, At3g58610, At2g43100, At3g19710, At1g30510, At3g58990, At2g30970, At4g05390, At1g58080, At1g66200, At1g77760, At5g23010, At5g50850, At1g31180, At2g15620, At1g44100, At1g63940, At3g60750, At5g14760, At1g43710, At1g62180, At3g22850, At5g53460, At5g04590, At1g55920, At1g50110, At5g45340, At3g12670, At3g23570, At3g07270, At1g31230
nitrogen and sulfur metabolism 19 out of 288 genes, 6.6% 380 out of 23473 genes, 1.6% 8.05e-05 At2g14920, At3g22890, At5g35630, At1g13420, At1g30510, At2g30970, At4g05390, At1g66200, At2g15620, At1g63940, At1g62180, At5g53460, At3g22850, At5g04590, At1g18590, At1g55920, At2g31950, At5g45340, At3g07270
amino acid biosynthesis 25 out of 288 genes, 8.7% 651 out of 23473 genes, 2.8% 0.00016 At3g61190, At5g35630, At3g58610, At2g43100, At3g19710, At3g58990, At2g30970, At1g58080, At1g66200, At1g77760, At5g23010, At1g31180, At2g15620, At3g60750, At1g43710, At1g62180, At5g53460, At3g22850, At5g04590, At1g55920, At1g50110, At5g45340, At3g12670, At3g07270, At1g31230
tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle) 9 out of 288 genes, 3.1% 97 out of 23473 genes, 0.4% 0.00090 At3g13930, At5g14760, At4g26970, At4g35260, At2g43100, At3g58990, At2g30970, At1g31180, At5g50850
symporters 9 out of 288 genes, 3.1% 104 out of 23473 genes, 0.4% 0.00161 At4g12030, At5g13750, At1g08090, At1g44100, At5g47560, At4g17550, At4g34950, At1g08100, At2g47160
pentose-phosphate pathway 9 out of 288 genes, 3.1% 105 out of 23473 genes, 0.4% 0.00175 At1g64190, At5g41670, At3g60750, At1g24280, At5g13420, At5g51830, At3g52930, At2g31390, At5g13110
C-compound and carbohydrate metabolism 53 out of 288 genes, 18.4% 2316 out of 23473 genes, 9.9% 0.00184 At3g22890, At1g09780, At5g06570, At3g48990, At1g24280, At5g18840, At1g19450, At2g43100, At2g36580, At1g23870, At5g12860, At5g13110, At1g22170, At5g23010, At4g34950, At1g59960, At2g29730, At5g54800, At2g31790, At3g60750, At4g35260, At1g55920, At1g78090, At4g34860, At3g13560, At3g52930, At1g21440, At4g18340, At1g62660, At4g24620, At1g08090, At5g51460, At5g41670, At3g01260, At5g13420, At2g22480, At4g36670, At1g74030, At5g51830, At1g60710, At4g17550, At4g30470, At2g31390, At5g50850, At1g31180, At1g64190, At5g47560, At5g14760, At3g13930, At1g70410, At3g47520, At1g78050, At2g22500
sulfate assimilation 4 out of 288 genes, 1.4% 13 out of 23473 genes, 0.1% 0.00426 At2g14920, At3g22890, At1g13420, At1g18590
pentose-phosphate pathway oxidative branch 4 out of 288 genes, 1.4% 13 out of 23473 genes, 0.1% 0.00426 At1g64190, At5g41670, At1g24280, At5g13110
C-compound and carbohydrate utilization 41 out of 288 genes, 14.2% 1664 out of 23473 genes, 7.1% 0.00453 At3g22890, At1g09780, At5g06570, At3g48990, At1g24280, At2g43100, At2g36580, At1g23870, At1g22170, At5g13110, At5g23010, At5g54800, At3g60750, At4g35260, At1g55920, At1g78090, At4g34860, At3g13560, At3g52930, At1g21440, At4g18340, At1g62660, At4g24620, At5g41670, At5g51460, At3g01260, At5g13420, At1g74030, At2g22480, At5g51830, At1g60710, At4g30470, At2g31390, At5g50850, At1g31180, At1g64190, At5g14760, At3g13930, At1g70410, At3g47520, At1g78050
TRANSPORT FACILITATION 49 out of 288 genes, 17.0% 2197 out of 23473 genes, 9.4% 0.00861 At5g18840, At1g19450, At3g52960, At5g59490, At1g30510, At3g63260, At4g00630, At4g05390, At2g38170, At2g27510, At1g78000, At5g12860, At4g34950, At4g29950, At1g59960, At3g54900, At4g12030, At1g63940, At5g54800, At1g08100, At1g12110, At1g72160, At2g41560, At2g47160, At1g08090, At5g41670, At4g26970, At1g31770, At3g27170, At4g36670, At3g58990, At4g30190, At1g60710, At3g10520, At4g01840, At4g17550, At1g31180, At3g60330, At5g13750, At1g64190, At1g44100, At5g47560, At5g14760, At2g26650, At5g53460, At5g54170, At5g27100, At2g22500, At5g27150
Last modified: Mon March 22, 2004.
Comments:
Rodrigo Gutiérrez
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