ON THE INSIDE:

Peter V. Minorsky

On the Inside
Plant Physiol. 2008 148: 1735-1736. doi:10.1104/pp.104.900278 [Full Text] [PDF]  

LETTER TO THE EDITOR:

Eliezer Lifschitz

Multiple Regulatory Roles for SELF-PRUNING in the Shoot System of Tomato
Plant Physiol. 2008 148: 1737-1738. doi:10.1104/pp.104.900279 [Full Text] [PDF]  

Claire Périlleux (on behalf of all the co-authors)

Response to Lifschitz Letter
Plant Physiol. 2008 148: 1738-1739. doi:10.1104/pp.104.900280 [Full Text] [PDF]  

BIOINFORMATICS:

Eric Lyons, Brent Pedersen, Josh Kane, Maqsudul Alam, Ray Ming, Haibao Tang, Xiyin Wang, John Bowers, Andrew Paterson, Damon Lisch, and Michael Freeling

Finding and Comparing Syntenic Regions among Arabidopsis and the Outgroups Papaya, Poplar, and Grape: CoGe with Rosids
Plant Physiol. 2008 148: 1772-1781. First Published on October 24, 2008; doi:10.1104/pp.108.124867 [Abstract] [Full Text] [PDF] [Supplemental Data]  

GENOME ANALYSIS:

Roger W. Innes, Carine Ameline-Torregrosa, Tom Ashfield, Ethalinda Cannon, Steven B. Cannon, Ben Chacko, Nicolas W.G. Chen, Arnaud Couloux, Anita Dalwani, Roxanne Denny, Shweta Deshpande, Ashley N. Egan, Natasha Glover, Christian S. Hans, Stacy Howell, Dan Ilut, Scott Jackson, Hongshing Lai, Jafar Mammadov, Sara Martin del Campo, Michelle Metcalf, Ashley Nguyen, Majesta O'Bleness, Bernard E. Pfeil, Ram Podicheti, Milind B. Ratnaparkhe, Sylvie Samain, Iryna Sanders, Béatrice Ségurens, Mireille Sévignac, Sue Sherman-Broyles, Vincent Thareau, Dominic M. Tucker, Jason Walling, Adam Wawrzynski, Jing Yi, Jeff J. Doyle, Valérie Geffroy, Bruce A. Roe, M.A. Saghai Maroof, and Nevin D. Young Differential Accumulation of Retroelements and Diversification of NB-LRR Disease Resistance Genes in Duplicated Regions following Polyploidy in the Ancestor of Soybean Plant Physiol. 2008 148: 1740-1759. First Published on October 8, 2008; doi:10.1104/pp.108.127902 [Abstract] [Full Text] [PDF] [Supplemental Data] OPEN ACCESS ARTICLE

Adam Wawrzynski, Tom Ashfield, Nicolas W.G. Chen, Jafar Mammadov, Ashley Nguyen, Ram Podicheti, Steven B. Cannon, Vincent Thareau, Carine Ameline-Torregrosa, Ethalinda Cannon, Ben Chacko, Arnaud Couloux, Anita Dalwani, Roxanne Denny, Shweta Deshpande, Ashley N. Egan, Natasha Glover, Stacy Howell, Dan Ilut, Hongshing Lai, Sara Martin del Campo, Michelle Metcalf, Majesta O'Bleness, Bernard E. Pfeil, Milind B. Ratnaparkhe, Sylvie Samain, Iryna Sanders, Béatrice Ségurens, Mireille Sévignac, Sue Sherman-Broyles, Dominic M. Tucker, Jing Yi, Jeff J. Doyle, Valérie Geffroy, Bruce A. Roe, M.A. Saghai Maroof, Nevin D. Young, and Roger W. Innes Replication of Nonautonomous Retroelements in Soybean Appears to Be Both Recent and Common Plant Physiol. 2008 148: 1760-1771. First Published on October 24, 2008; doi:10.1104/pp.108.127910 [Abstract] [Full Text] [PDF] [Supplemental Data] OPEN ACCESS ARTICLE

BIOCHEMICAL PROCESSES AND MACROMOLECULAR STRUCTURES:

Wagner L. Araújo, Adriano Nunes-Nesi, Sandra Trenkamp, Victoria I. Bunik, and Alisdair R. Fernie Inhibition of 2-Oxoglutarate Dehydrogenase in Potato Tuber Suggests the Enzyme Is Limiting for Respiration and Confirms Its Importance in Nitrogen Assimilation Plant Physiol. 2008 148: 1782-1796. First Published on October 8, 2008; doi:10.1104/pp.108.126219 [Abstract] [Full Text] [PDF] [Supplemental Data] OPEN ACCESS ARTICLE

Luigi Palmieri, Antonella Santoro, Fernando Carrari, Emanuela Blanco, Adriano Nunes-Nesi, Roberto Arrigoni, Francesco Genchi, Alisdair R. Fernie, and Ferdinando Palmieri Identification and Characterization of ADNT1, a Novel Mitochondrial Adenine Nucleotide Transporter from Arabidopsis Plant Physiol. 2008 148: 1797-1808. First Published on October 15, 2008; doi:10.1104/pp.108.130310 [Abstract] [Full Text] [PDF] OPEN ACCESS ARTICLE

Holger Eubel, Etienne H. Meyer, Nicolas L. Taylor, John D. Bussell, Nicholas O'Toole, Joshua L. Heazlewood, Ian Castleden, Ian D. Small, Steven M. Smith, and A. Harvey Millar Novel Proteins, Putative Membrane Transporters, and an Integrated Metabolic Network Are Revealed by Quantitative Proteomic Analysis of Arabidopsis Cell Culture Peroxisomes Plant Physiol. 2008 148: 1809-1829. First Published on October 17, 2008; doi:10.1104/pp.108.129999 [Abstract] [Full Text] [PDF] [Supplemental Data] OPEN ACCESS ARTICLE

Stephen P. Slocombe, Ines Schauvinhold, Ryan P. McQuinn, Katrin Besser, Nicholas A. Welsby, Andrea Harper, Naveed Aziz, Yi Li, Tony R. Larson, James Giovannoni, Richard A. Dixon, and Pierre Broun Transcriptomic and Reverse Genetic Analysesof Branched-Chain Fatty Acid and Acyl Sugar Production in Solanum pennellii and Nicotiana benthamiana Plant Physiol. 2008 148: 1830-1846. First Published on October 17, 2008; doi:10.1104/pp.108.129510 [Abstract] [Full Text] [PDF] [Supplemental Data] OPEN ACCESS ARTICLE

Holger Schuhmann, Pitter F. Huesgen, Christine Gietl, and Iwona Adamska The DEG15 Serine Protease Cleaves Peroxisomal Targeting Signal 2-Containing Proteins in Arabidopsis Plant Physiol. 2008 148: 1847-1856. First Published on October 24, 2008; doi:10.1104/pp.108.125377 [Abstract] [Full Text] [PDF] OPEN ACCESS ARTICLE

Felix Willmund, Karolin V. Dorn, Miriam Schulz-Raffelt, and Michael Schroda The Chloroplast DnaJ Homolog CDJ1 of Chlamydomonas reinhardtii Is Part of a Multichaperone Complex Containing HSP70B, CGE1, and HSP90C Plant Physiol. 2008 148: 2070-2082. First Published on October 17, 2008; doi:10.1104/pp.108.127944 [Abstract] [Full Text] [PDF] OPEN ACCESS ARTICLE

Karen Loizeau, Veerle De Brouwer, Bernadette Gambonnet, Agnès Yu, Jean-Pierre Renou, Dominique Van Der Straeten, Willy E. Lambert, Fabrice Rébeillé, and Stéphane Ravanel

A Genome-Wide and Metabolic Analysis Determined the Adaptive Response of Arabidopsis Cells to Folate Depletion Induced by Methotrexate
Plant Physiol. 2008 148: 2083-2095. First Published on October 17, 2008; doi:10.1104/pp.108.130336 [Abstract] [Full Text] [PDF] [Supplemental Data]  

Bjarne G. Hansen, Rachel E. Kerwin, James A. Ober, Virginia M. Lambrix, Thomas Mitchell-Olds, Jonathan Gershenzon, Barbara A. Halkier, and Daniel J. Kliebenstein A Novel 2-Oxoacid-Dependent Dioxygenase Involved in the Formation of the Goiterogenic 2-Hydroxybut-3-enyl Glucosinolate and Generalist Insect Resistance in Arabidopsis Plant Physiol. 2008 148: 2096-2108. First Published on October 22, 2008; doi:10.1104/pp.108.129981 [Abstract] [Full Text] [PDF] [Supplemental Data] OPEN ACCESS ARTICLE

BIOENERGETICS AND PHOTOSYNTHESIS:

Marion Eisenhut, Jan Huege, Doreen Schwarz, Hermann Bauwe, Joachim Kopka, and Martin Hagemann

Metabolome Phenotyping of Inorganic Carbon Limitation in Cells of the Wild Type and Photorespiratory Mutants of the Cyanobacterium Synechocystis sp. Strain PCC 6803
Plant Physiol. 2008 148: 2109-2120. First Published on October 22, 2008; doi:10.1104/pp.108.129403 [Abstract] [Full Text] [PDF] [Supplemental Data]  

CELL BIOLOGY AND SIGNAL TRANSDUCTION:

Anna Cedzich, Harald Stransky, Burkhard Schulz, and Wolf B. Frommer Characterization of Cytokinin and Adenine Transport in Arabidopsis Cell Cultures Plant Physiol. 2008 148: 1857-1867. First Published on October 3, 2008; doi:10.1104/pp.108.128454 [Abstract] [Full Text] [PDF] OPEN ACCESS ARTICLE

Elitsa A. Ananieva, Glenda E. Gillaspy, Amanda Ely, Ryan N. Burnette, and F. Les Erickson Interaction of the WD40 Domain of a Myoinositol Polyphosphate 5-Phosphatase with SnRK1 Links Inositol, Sugar, and Stress Signaling Plant Physiol. 2008 148: 1868-1882. First Published on October 17, 2008; doi:10.1104/pp.108.130575 [Abstract] [Full Text] [PDF] [Supplemental Data] OPEN ACCESS ARTICLE

Seung-Ick Oh, Jimyeong Park, Sunhee Yoon, Yungyeong Kim, Soojin Park, Migyeong Ryu, Min Jung Nam, Sung Han Ok, Jeong-Kook Kim, Jeong-Sheop Shin, and Kyung-Nam Kim The Arabidopsis Calcium Sensor Calcineurin B-Like 3 Inhibits the 5'-Methylthioadenosine Nucleosidase in a Calcium-Dependent Manner Plant Physiol. 2008 148: 1883-1896. First Published on October 22, 2008; doi:10.1104/pp.108.130419 [Abstract] [Full Text] [PDF] [Supplemental Data] OPEN ACCESS ARTICLE

Gili Ben-Nissan, Weier Cui, Dong-Jin Kim, Yaodong Yang, Byung-Chun Yoo, and Jung-Youn Lee Arabidopsis Casein Kinase 1-Like 6 Contains a Microtubule-Binding Domain and Affects the Organization of Cortical Microtubules Plant Physiol. 2008 148: 1897-1907. First Published on October 22, 2008; doi:10.1104/pp.108.129346 [Abstract] [Full Text] [PDF] [Supplemental Data] OPEN ACCESS ARTICLE

DEVELOPMENT AND HORMONE ACTION:

Megan G. Sawchuk, Tyler J. Donner, Philip Head, and Enrico Scarpella Unique and Overlapping Expression Patterns among Members of Photosynthesis-Associated Nuclear Gene Families in Arabidopsis Plant Physiol. 2008 148: 1908-1924. First Published on September 26, 2008; doi:10.1104/pp.108.126946 [Abstract] [Full Text] [PDF] [Supplemental Data] OPEN ACCESS ARTICLE

Yu'e Zhang, Wenying Xu, Zhonghui Li, Xing Wang Deng, Weihua Wu, and Yongbiao Xue

F-Box Protein DOR Functions As a Novel Inhibitory Factor for Abscisic Acid-Induced Stomatal Closure under Drought Stress in Arabidopsis
Plant Physiol. 2008 148: 2121-2133. First Published on October 3, 2008; doi:10.1104/pp.108.126912 [Abstract] [Full Text] [PDF] [Supplemental Data]  

ENVIRONMENTAL STRESS AND ADAPTATION TO STRESS:

Jean-Marie Mouillon, Sylvia K. Eriksson, and Pia Harryson

Mimicking the Plant Cell Interior under Water Stress by Macromolecular Crowding: Disordered Dehydrin Proteins Are Highly Resistant to Structural Collapse
Plant Physiol. 2008 148: 1925-1937. First Published on October 10, 2008; doi:10.1104/pp.108.124099 [Abstract] [Full Text] [PDF] [Supplemental Data]  

Yong Xiang, Ning Tang, Hao Du, Haiyan Ye, and Lizhong Xiong Characterization of OsbZIP23 as a Key Player of the Basic Leucine Zipper Transcription Factor Family for Conferring Abscisic Acid Sensitivity and Salinity and Drought Tolerance in Rice Plant Physiol. 2008 148: 1938-1952. First Published on October 17, 2008; doi:10.1104/pp.108.128199 [Abstract] [Full Text] [PDF] [Supplemental Data] OPEN ACCESS ARTICLE

Lijun Wu, Zhijin Zhang, Haiwen Zhang, Xue-Chen Wang, and Rongfeng Huang Transcriptional Modulation of Ethylene Response Factor Protein JERF3 in the Oxidative Stress Response Enhances Tolerance of Tobacco Seedlings to Salt, Drought, and Freezing Plant Physiol. 2008 148: 1953-1963. First Published on October 22, 2008; doi:10.1104/pp.108.126813 [Abstract] [Full Text] [PDF] [Supplemental Data] OPEN ACCESS ARTICLE

Peng Wang, Dongmei Zhou, Thomas B. Kinraide, Xiaosan Luo, Lianzhen Li, Dandan Li, and Hailin Zhang

Cell Membrane Surface Potential (₀) Plays a Dominant Role in the Phytotoxicity of Copper and Arsenate
Plant Physiol. 2008 148: 2134-2143. First Published on October 1, 2008; doi:10.1104/pp.108.127464 [Abstract] [Full Text] [PDF] [Supplemental Data]  

GENETICS, GENOMICS, AND MOLECULAR EVOLUTION:

Robert C. Day, Rowan P. Herridge, Barbara A. Ambrose, and Richard C. Macknight Transcriptome Analysis of Proliferating Arabidopsis Endosperm Reveals Biological Implications for the Control of Syncytial Division, Cytokinin Signaling, and Gene Expression Regulation Plant Physiol. 2008 148: 1964-1984. First Published on October 15, 2008; doi:10.1104/pp.108.128108 [Abstract] [Full Text] [PDF] [Supplemental Data] OPEN ACCESS ARTICLE

PLANTS INTERACTING WITH OTHER ORGANISMS:

Joëlle Fournier, Antonius C.J. Timmers, Björn J. Sieberer, Alain Jauneau, Mireille Chabaud, and David G. Barker Mechanism of Infection Thread Elongation in Root Hairs of Medicago truncatula and Dynamic Interplay with Associated Rhizobial Colonization Plant Physiol. 2008 148: 1985-1995. First Published on October 17, 2008; doi:10.1104/pp.108.125674 [Abstract] [Full Text] [PDF] [Supplemental Data] OPEN ACCESS ARTICLE

David De Vleesschauwer, Mohammad Djavaheri, Peter A.H.M. Bakker, and Monica Höfte Pseudomonas fluorescens WCS374r-Induced Systemic Resistance in Rice against Magnaporthe oryzae Is Based on Pseudobactin-Mediated Priming for a Salicylic Acid-Repressible Multifaceted Defense Response Plant Physiol. 2008 148: 1996-2012. First Published on October 22, 2008; doi:10.1104/pp.108.127878 [Abstract] [Full Text] [PDF] OPEN ACCESS ARTICLE

WHOLE PLANT AND ECOPHYSIOLOGY:

Gary J. Lanigan, Nicholas Betson, Howard Griffiths, and Ulli Seibt Carbon Isotope Fractionation during Photorespiration and Carboxylation in Senecio Plant Physiol. 2008 148: 2013-2020. First Published on October 15, 2008; doi:10.1104/pp.108.130153 [Abstract] [Full Text] [PDF] [Supplemental Data] OPEN ACCESS ARTICLE

Johannes Kromdijk, Hans E. Schepers, Fabrizio Albanito, Nuala Fitton, Faye Carroll, Michael B. Jones, John Finnan, Gary J. Lanigan, and Howard Griffiths Bundle Sheath Leakiness and Light Limitation during C4 Leaf and Canopy CO2 Uptake Plant Physiol. 2008 148: 2144-2155. First Published on October 29, 2008; doi:10.1104/pp.108.129890 [Abstract] [Full Text] [PDF] [Supplemental Data] OPEN ACCESS ARTICLE

SYSTEMS BIOLOGY, MOLECULAR BIOLOGY, AND GENE REGULATION:

Sergey Malitsky, Eyal Blum, Hadar Less, Ilya Venger, Moshe Elbaz, Shai Morin, Yuval Eshed, and Asaph Aharoni

The Transcript and Metabolite Networks Affected by the Two Clades of Arabidopsis Glucosinolate Biosynthesis Regulators
Plant Physiol. 2008 148: 2021-2049. First Published on October 1, 2008; doi:10.1104/pp.108.124784 [Abstract] [Full Text] [PDF] [Supplemental Data]  

Abha Khandelwal, Thanura Elvitigala, Bijoy Ghosh, and Ralph S. Quatrano Arabidopsis Transcriptome Reveals Control Circuits Regulating Redox Homeostasis and the Role of an AP2 Transcription Factor Plant Physiol. 2008 148: 2050-2058. First Published on October 1, 2008; doi:10.1104/pp.108.128488 [Abstract] [Full Text] [PDF] [Supplemental Data] OPEN ACCESS ARTICLE

Denghui Xing, Hongwei Zhao, and Qingshun Quinn Li Arabidopsis CLP1-SIMILAR PROTEIN3, an Ortholog of Human Polyadenylation Factor CLP1, Functions in Gametophyte, Embryo, and Postembryonic Development Plant Physiol. 2008 148: 2059-2069. First Published on October 29, 2008; doi:10.1104/pp.108.129817 [Abstract] [Full Text] [PDF] [Supplemental Data] OPEN ACCESS ARTICLE

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