Table II. Mid-term and long-term gene expression changes

Total numbers of differentially expressed genes in roots and shoots for each comparison are given. Genes were classified as “all” differentially expressed and as “specific” differentially expressed genes for the given comparison. These data are presented as a Venn diagram in Supplemental Figure S6.

OrganRootsShoots
Comparison0 to 2 d2 to 10 d0 to 10 d0 to 2 d2 to 10 d0 to 10 d
ExpressionAllSpecificAllSpecificAllSpecificAllSpecificAllSpecificAllSpecific
Up-regulated genes6271621627510392172742231440
Down-regulated genes170116213331415853193238363
Total23218224176082441502260354697103