Table V. Known and predicted functions of the microarray meta-analysis identified cytokinin induced genes using the MapMan bioinformatics tool

References for genes with previously defined functions are listed in the footnotes.

Broad-Function CategoryFunctionsGenes from the Golden List as Predicted by MapMan Analysis to be Associated with Known Functional Category
Stress (biotic/abiotic)Pathogen, defense, drought, freezing tolerance, immunityAT4G11190 (Dirigent-like)1, AT4G11210 (Dirigent-like)1, AT1G09090 (RBOHB)2, AT5G45070 (AtPP2-A8), AT2G43550 (DEFL), AT1G80920 (J8), AT2G43200 (Methyltransferases), AT1G14960 Polyketide cyclase), AT3G25930 (Hydrolase)
RedoxOxidative burst, senescence, stress, photooxidative stressAT1G03850 (GRXS13)3, AT5G14070 (ROXY2)4, AT4G15660 (Glutaredoxin), AT4G15680 (Glutaredoxin), AT2G30540 (Glutaredoxin), AT3G62930 (Glutaredoxin)
Protein degradation/ modificationUbiquitination, posttranslational modificationAT3G48360 (BT2)5, AT3G54720 (AMP1)6, AT4G03510 (RMA1)7, AT2G44130 (Galactose oxidase)8, AT1G61590 (Protein kinase), AT1G75440 (UBC16), AT1G76410 (ATL8), AT1G15100 (RHA2A), AT1G80440 (Galactose oxidase), AT1G23390 (F-box protein), AT5G37540 (Aspartyl protease)
SignalingNutrient, receptor kinases, lightAT3G48360 (BT2)5, AT5G60890 (MYB34)9, AT5G64260 (EXL2), AT5G09440 (EXL4), AT5G01740 (NTF2), AT2G02710 (PLPB)
Cell wallModification, degradation, biosynthesisAT1G69530 (EXPA1)10,11, AT3G61640 (AGP20), AT2G32990 (GH9B8), AT3G15720 (Pectin lyase like), AT2G36870 (XTH32), AT2G03090 (EXPA15), AT4G14130 (XTR7), AT5G56320 (EXPA14), AT1G26770 (EXPA10)
DevelopmentCell proliferation and differentiation, nodulation, seed developmentAT1G09090 (RBOHB)2, AT5G14070 (ROXY2)4, AT2G35980 (YLS9)12, AT5G60520 (LEA), AT5G13180 (ANAC083), AT3G04070 (ANAC047), AT2G39705 (RTFL8), AT1G74940 (Unknown), AT4G34950 (Major Facilitator), AT2G28120 (Unknown)
Hormone action/ interactionBiosynthesis and metabolism of auxin, cytokinin, brassinosteroid, salicylic acid, ethyleneAT1G75450 (CKX5)13, AT4G29740 (CKX4)13, AT2G01830 (WOL)14, AT1G15550 (GA3OX1)15, AT5G05860 (UGT76C2)16, AT5G56970 (CKX3)17, AT2G17820 (AHK1)18, AT1G75580 (SAUR-like), AT5G50760 (SAUR-like), AT4G31320 (SAUR-like), AT4G38840 (SAUR-like), AT2G23170 (GH3.3), AT5G38020 (SAM-like), AT1G77330 (ACC oxidase), AT1G06160 (ORA59), AT5G61590 (AP2 family), AT3G62550 (hydrolase-like)
Secondary metabolismFlavanoids, lignin, phenylpropanoids, anthocyanin, suberin, alkaloidsAT5G48010 (THAS1)19, AT5G60890 (MYB34)9, AT1G70560 (TAA1)20, AT2G40230 (Acyltransferase), AT3G29410 (Terpenoid cyclase), AT5G47950 (Acyltransferase), AT3G50300 (Acyltransferase), AT5G01210 (Acyltransferase), AT5G47980 (Acyltransferase), AT3G57010 (Strictosidine synthase), AT3G44320 (NIT3), AT2G22930 (UDP-glucosyltransferase)
Gene expression/ regulationTranscription factors, miRNA, Type A ARRs, histone modifiersAT2G46310 (CRF5)21, AT1G74890 (ARR15)22, AT1G59940 (ARR3)23, AT1G19050 (ARR7)23, AT3G48100 (ARR5)23, AT3G57040 (ARR9)23, AT5G62920 (ARR6)23, AT2G41310 (ARR8)23, AT2G28160 (bHLH029)24, AT2G22770 (NAI1)25, AT4G26150 (CGA1)26,27, AT1G10480 (ZFP5)28,29,30, AT1G16530 (ASL9)31, AT1G04240 (SHY2)13, AT1G72360 (ERF73)32, AT2G40970 (MYBC1)33, AT1G71030 (MYBL2)34, AT5G65210 (TGA1)35, AT2G21650 (MEE3), AT4G39070 (B-box zinc finger), AT5G50915 (bHLH), AT4G23750 (CRF2), AT2G40670 (ARR16), AT1G10470 (ARR4), AT4G25410 (bHLH), AT1G18400, AT1G04250 (BEE1), AT2G27840 (HDT4), AT1G67030 (ZFP6), AT1G68360 (C2H2), AT3G48920 (bHLH), AT5G05790 (Homeodomain), AT3G04070 (ANAC047), AT1G68880 (ZIP), AT5G15830 (ZIP3), AT1G31320 (LBD4), AT3G50700 (IDDT2)
  • 1Ralph et al. (2007).  2Müller et al. (2009).  3Laporte et al. (2012).  4Wang et al. (2009).  5Mandadi et al. (2009).  6Griffiths et al. (2011).  7Lee et al. (2009).  8Curtis et al. (2013).  9Celenza et al. (2005).  10Wei et al. (2011).  11Zhang et al. (2011).  12Zheng et al. (2005).  13Bartrina et al. (2011).  14Riefler et al. (2006).  15Zhang et al. (2010).  16Wang et al. (2011a).  17Holst et al. (2011).  18Urao et al. (1999).  19de Silva et al. (2011).  20Yamada et al. (2009).  21Liang et al. (2010).  22Müller and Sheen (2008).  23To et al. (2004).  24Yuan, et al. (2005).  25Matsushima et al. (2003).  26Hudson et al. (2011).  27Chiang et al. (2012).  28Zhou et al. (2011).  29Zhou et al. (2012).  30An et al. (2012).  31Naito et al. (2007).  32Licausi et al. (2010).  33Zhai et al. (2010).  34Ye et al. (2012).  35Shearer et al. (2012).