Table I. Overview of significantly affected functional class gene bins

Mean log2 fold ratios of transcripts were analyzed by functional class scoring for each experiment using MapMan software and applying the Hochberg correction. Numbers of transcript elements within each bin are indicated along with the P value.

BinNameElementsP
1PS1426.87E-06
1.1PS.lightreaction901.81E-08
1.1.1PS.lightreaction.photosystem II411.72E-06
1.1.1.1PS.lightreaction.photosystem II.LHC-II131.71E-06
1.1.2PS.lightreaction.photosystem I160.005193416
1.1.2.2PS.lightreaction.photosystem I.PSI polypeptide subunits90.00185704
1.1.4PS.lightreaction.ATP synthase60.049475844
2.2.2Major CHO metabolism.degradation.starch250.002786643
8.1.1.1TCA/org.transformation.TCA.pyruvate DH.E150.040470913
8.1.1.3TCA/org.transformation.TCA.pyruvate DH.E340.016589986
10Cell wall4842.07E-04
11.1.15Lipid metabolism.FA synthesis60.004793971
13.1.5.1.1Amino acid metabolism30.001269115
Synthesis.Ser-Gly-Cys
13.2.3.5Amino acid metabolism.degradation40.011276955
Asp family.Lys
13.2.4.4Amino acid metabolism.degradation40.010254625
Branched-chain group.Leu
16.8.4Secondary metabolism.flavonoids.flavonols180.033109368
17.7.3Hormone metabolism.jasmonate.induced-regulated-responsive-activated130.034124196
19.7Tetrapyrrole synthesis.uroporphyrinogen decarboxylase20.022203327
20.2.99Stress.abiotic.unspecified1070.001724455
21.4Redox.glutaredoxins390.044251309
23.3.3Nucleotide metabolism.salvage.NUDIX hydrolases240.009327712
24.2Biodegradation of xenobiotics.lactoylglutathione lyase100.04597381
26.12Misc.peroxidases680.002081544
26.4Misc.beta 1,3 glucan hydrolases620.005670066
26.9Misc.glutathione S transferases500.013239802
27RNA27258.86E-06
27.3RNA.regulation of transcription21898.36E-04
27.3.3RNA.regulation of transcription.AP2/EREBP, APETALA21120.010254625
27.3.27RNA.regulation of transcription.NAC domain transcription factor family180.032128735
29.2Protein.synthesis5282.38E-14
29.5.11.20Protein.degradation.ubiquitin.proteasome608.26E-05
29.5.2Protein.degradation.autophagy230.002491643
30.2.3Signaling.receptor kinases.Leu rich repeat III410.022539336